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Gene C11orf17TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
115 supporting clones for gene C11orf17 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM706322 eye, lens .a 1 to 560 1 to 560   tiling clone, fully sequenced,   560/560
(100 %)
1 diff
(99.9 %id)
CA430307 cell lines, Chondrosarcoma .a 12 to 734 735 to 19   tiling clone, AAA   717/717
(100 %)
7 diff
(99.1 %id)
BU734702 eye, lens .a 530 to 734 223 to 19   fully sequenced, AAA   205/205
(100 %)
0 diff
(100 %id)
AK075308   .b 1 to 1284 2 to 1285 A41T F92S tiling clone, available from FLJ,   1285/1829
(70 %)
10 diff
(99.5 %id)
NM_182901.2   .b 1 to 1426 2 to 1427 exact RefSeq,   1427/1427
(100 %)
0 diff
(100 %id)
BM763534 myeloma .b 1 to 515 2 to 516   tiling clone,   516/516
(100 %)
0 diff
(100 %id)
DB294448.
matches multiple genes
  .b 1 to 827 2 to 827 A41T F92S N166T I167S S168L ... capped also hits gene NUAK2 826/828
(99 %)
8 diff
(99.1 %id)
AA431064   .c 1 to 393 1 to 402   tiling clone,   404/413
(97 %)
36 diff
(91.3 %id)
AF493783 lymph node .c 15 to 1320 1 to 1306 exact tiling clone, AAA   1306/1306
(100 %)
1 diff
(100.0 %id)
NM_020642.3   .c 15 to 1322 1 to 1308 exact RefSeq,   1308/1308
(100 %)
0 diff
(100 %id)
CB129331 cervix, Uterine .c 43 to 659 1 to 617       617/617
(100 %)
1 diff
(99.9 %id)
BG432732 Kidney .c 59 to 797 1 to 745 S83V A84L S85P F86S R87E ...     745/746
(99 %)
16 diff
(97.9 %id)
BP300727   .c 60 to 638 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
BM752417 Ascites, stomach .c 60 to 507 1 to 447       447/447
(100 %)
3 diff
(99.4 %id)
BP247487 Kidney .c 62 to 657 1 to 596       596/596
(100 %)
0 diff
(100 %id)
CB119130 Liver .c 62 to 385 1 to 324       324/324
(100 %)
2 diff
(99.4 %id)
BP309559 brain .c 62 to 653 1 to 592       592/592
(100 %)
5 diff
(99.2 %id)
BP330083 rectum .c 62 to 643 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BP346582 brain .c 62 to 644 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA895044 skeletal muscle .c 63 to 552 2 to 491   capped   490/490
(100 %)
0 diff
(100 %id)
CB129488 Liver .c 68 to 461 1 to 394       394/394
(100 %)
1 diff
(99.8 %id)
BP424109 small intestine .c 79 to 580 1 to 502     Submitted on the opposite strand 502/502
(100 %)
4 diff
(99.3 %id)
BI669559 brain, hypothalamus .c 84 to 773 16 to 705 exact     690/705
(97 %)
6 diff
(99.2 %id)
TI_44345098   .c 84 to 773 142 to 831 exact     690/831
(83 %)
6 diff
(99.3 %id)
BC030996 Kidney .c 85 to 1320 1 to 1237 exact available from MGC, AAA   1237/1237
(100 %)
6 diff
(99.6 %id)
TI_1948220752   .c 90 to 541 127 to 578       452/478
(94 %)
6 diff
(98.8 %id)
TI_1948220921   .c 90 to 453 138 to 501   fully sequenced,   364/391
(93 %)
6 diff
(98.5 %id)
TI_1948221264   .c 90 to 680 129 to 726       598/1327
(45 %)
35 diff
(97.4 %id)
AF512007   .c 91 to 723 1 to 633 R23K     633/633
(100 %)
1 diff
(99.9 %id)
EL735752 mixed .c 91 to 654 1 to 564       564/564
(100 %)
0 diff
(100 %id)
BI160019 epithelioid carcinoma cell line, Pancreas .c 100 to 801 1 to 702       702/777
(90 %)
10 diff
(98.8 %id)
AI017578 pooled .c 106 to 564 1 to 459     Submitted on the opposite strand 459/459
(100 %)
1 diff
(99.8 %id)
AI418249 pooled .c 106 to 606 1 to 501     Submitted on the opposite strand 501/501
(100 %)
0 diff
(100 %id)
AI435900 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 106 to 604 1 to 499     Submitted on the opposite strand 499/499
(100 %)
1 diff
(99.8 %id)
AI769232 pooled .c 106 to 585 1 to 480     Submitted on the opposite strand 480/480
(100 %)
0 diff
(100 %id)
AW072024 anaplastic oligodendroglioma, brain .c 106 to 571 1 to 466     Submitted on the opposite strand 466/466
(100 %)
2 diff
(99.6 %id)
AI370848   .c 124 to 620 1 to 497     Submitted on the opposite strand 497/502
(99 %)
3 diff
(99.5 %id)
AI871449 anaplastic oligodendroglioma, brain .c 124 to 591 1 to 468     Submitted on the opposite strand 468/468
(100 %)
1 diff
(99.8 %id)
AW516653 cervix, tumor .c 128 to 518 1 to 391     Submitted on the opposite strand 391/391
(100 %)
3 diff
(99.3 %id)
AW514176 pooled .c 144 to 573 1 to 430     Submitted on the opposite strand 430/430
(100 %)
1 diff
(99.8 %id)
AW510839 pooled .c 144 to 291 1 to 148     Submitted on the opposite strand 148/148
(100 %)
1 diff
(99.4 %id)
BM449949 melanotic melanoma, skin .c 244 to 1062 1 to 822       822/882
(93 %)
7 diff
(99.3 %id)
AI360308 anaplastic oligodendroglioma, brain .c 347 to 793 447 to 1       447/447
(100 %)
0 diff
(100 %id)
AW225339   .c 361 to 649 1 to 291       291/322
(90 %)
6 diff
(98.2 %id)
BM759108 lymph node, stomach .c 369 to 837 1 to 469       469/469
(100 %)
0 diff
(100 %id)
BM838477 lymph node, stomach .c 369 to 871 1 to 504       504/504
(100 %)
2 diff
(99.7 %id)
BE844220 testis_normal .c 371 to 734 360 to 3       358/366
(97 %)
2 diff
(99.5 %id)
BM853864 Ascites, stomach .c 401 to 655 1 to 254       254/254
(100 %)
7 diff
(97.3 %id)
TI_1948220922   .c 423 to 722 420 to 121   fully sequenced,   300/420
(71 %)
1 diff
(99.8 %id)
AI590700 normal gingiva (cell line from immortalizedkeratinocytes) .c 453 to 793 352 to 12   AAA   341/341
(100 %)
1 diff
(99.8 %id)
BI256804 cervical carcinoma cell line, cervix .c 454 to 1098 1 to 645       645/645
(100 %)
1 diff
(99.9 %id)
BG461816   .c 471 to 778 3 to 310       308/312
(98 %)
13 diff
(95.9 %id)
CA306399 Alveolar Macrophage, lung .c 515 to 1145 664 to 34   AAA   631/648
(97 %)
0 diff
(100 %id)
BG166458 hypernephroma, cell line, Kidney .c 533 to 833 1 to 299       299/390
(76 %)
5 diff
(98.8 %id)
BG210023   .c 584 to 1307 735 to 17     Submitted on the opposite strand 719/825
(87 %)
0 diff
(100 %id)
BU617942 Bone, Subchondral Bone .c 616 to 1320 717 to 19   AAA   699/706
(99 %)
11 diff
(98.5 %id)
BQ582196 insulinoma, Pancreas .c 714 to 1303 590 to 1       590/590
(100 %)
1 diff
(99.9 %id)
BE910362 epithelioid carcinoma, Pancreas .c 805 to 1317 1 to 513       513/513
(100 %)
3 diff
(99.5 %id)
DB570956 hypothalamus .c 861 to 1319 1 to 459   tiling clone, Submitted on the opposite strand 459/459
(100 %)
3 diff
(99.4 %id)
BG462037   .c 871 to 1303 435 to 1     Submitted on the opposite strand 435/562
(77 %)
14 diff
(97.6 %id)
BE047069 squamous cell carcinoma, tongue .c 891 to 1320 432 to 1       432/432
(100 %)
23 diff
(94.7 %id)
DB532201 hippocampus .c 893 to 1320 1 to 428     Submitted on the opposite strand 428/428
(100 %)
8 diff
(98.2 %id)
BU960403 mixed (pool of 40 RNAs) .c 964 to 1323 1 to 360   AAA   360/360
(100 %)
4 diff
(98.9 %id)
BX108773 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 1017 to 1320 318 to 15   AAA   304/306
(99 %)
1 diff
(99.7 %id)
CB108887 Liver .c 1050 to 1320 1 to 271   AAA   271/271
(100 %)
1 diff
(99.7 %id)
AI470978 brain, glioblastoma (pooled) .c 1133 to 1315 183 to 1       183/183
(100 %)
0 diff
(100 %id)
AI933861 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 1138 to 1320 198 to 16   AAA   183/183
(100 %)
0 diff
(100 %id)
EC533185 Prostate .c 1213 to 1320 116 to 12   AAA   105/105
(100 %)
3 diff
(97.2 %id)
BP354736   .d 1 to 581 2 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP355293   .d 1 to 581 2 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
AK294549 amygdala .d 21 to 1127 1 to 1107 exact tiling clone,   1107/1107
(100 %)
0 diff
(100 %id)
DC318475 amygdala .d 21 to 573 1 to 553       553/553
(100 %)
0 diff
(100 %id)
AF493784 lymph node .e 1 to 1225 1 to 1225 exact tiling clone, AAA   1225/1225
(100 %)
1 diff
(100.0 %id)
DC346724 tongue, tumor tissue .f 1 to 569 1 to 569 exact tiling clone,   569/569
(100 %)
0 diff
(100 %id)
DC388322 small intestine .g 1 to 571 1 to 572 L29P E30G R31E A32G K33Q ... tiling clone,   572/572
(100 %)
1 diff
(99.9 %id)
DC315661 amygdala .g 3 to 576 1 to 575 V37G D38G W39L H40A A41C ... tiling clone,   575/575
(100 %)
1 diff
(99.9 %id)
DC394458 esophageal, tumor tissue .g 3 to 512 1 to 511   tiling clone,   511/511
(100 %)
2 diff
(99.7 %id)
DC411914 kidney, tumor tissue .h 1 to 564 5 to 568   tiling clone,   568/568
(100 %)
1 diff
(99.9 %id)
DC315658 amygdala .h 7 to 567 1 to 562       562/562
(100 %)
3 diff
(99.5 %id)
DC353009 brain .h 7 to 469 1 to 465       465/465
(100 %)
2 diff
(99.6 %id)
AK294506 amygdala .h 9 to 1417 1 to 1409 exact tiling clone,   1409/1409
(100 %)
4 diff
(99.8 %id)
DC317969 amygdala .h 9 to 589 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DC387653 small intestine .h 34 to 572 1 to 539       539/539
(100 %)
0 diff
(100 %id)
BX475689   .h 41 to 531 1 to 491       491/491
(100 %)
4 diff
(99.2 %id)
DC337658 substantia nigra .h 47 to 597 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DC351090 brain .h 67 to 620 1 to 554   tiling clone,   554/554
(100 %)
0 diff
(100 %id)
DC410325 thymus .h 120 to 642 1 to 523       523/590
(88 %)
1 diff
(99.9 %id)
AI472290 pooled .h 273 to 706 1 to 434     Submitted on the opposite strand 434/434
(100 %)
0 diff
(100 %id)
BX099185 parathyroid gland, parathyroid tumor .h 275 to 803 529 to 1   tiling clone, Submitted on the opposite strand 529/529
(100 %)
0 diff
(100 %id)
AA843864 parathyroid gland, parathyroid tumor .h 336 to 770 1 to 435     Submitted on the opposite strand 435/435
(100 %)
0 diff
(100 %id)
DA163539 amygdala .h 1023 to 1615 2 to 595   capped   594/594
(100 %)
3 diff
(99.5 %id)
DA774259 brain .h 1034 to 1602 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DA146597 amygdala .h 1389 to 1862 2 to 475   capped   474/474
(100 %)
2 diff
(99.6 %id)
BF516291   .h 1555 to 2040 503 to 18   tiling clone, AAA   486/486
(100 %)
0 diff
(100 %id)
BI261767 lymph, lymphoma, cell line .i 1 to 707 1 to 707 exact tiling clone,   707/708
(99 %)
4 diff
(99.5 %id)
AF493785 lymph node .i 17 to 1241 1 to 1225 exact tiling clone, AAA   1225/1225
(100 %)
1 diff
(100.0 %id)
BU600618 mixed (pool of 40 RNAs) .i 32 to 545 1 to 525 G50E R116A V117S E118R A119S ...     523/1017
(51 %)
19 diff
(98.2 %id)
DA895690 skeletal muscle .i 56 to 613 2 to 560   capped   559/559
(100 %)
3 diff
(99.5 %id)
BP197363 adrenal gland .i 62 to 641 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
DB465496 hippocampus .i 64 to 488 1 to 425       425/425
(100 %)
0 diff
(100 %id)
CB148674 Liver .i 64 to 649 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BP296023   .i 64 to 640 1 to 577       577/582
(99 %)
4 diff
(99.4 %id)
BM827684 stomach .i 64 to 612 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DT216905 brain .i 70 to 759 1 to 690       690/690
(100 %)
0 diff
(100 %id)
DB499812 hypothalamus .i 73 to 574 1 to 503       503/503
(100 %)
5 diff
(99.1 %id)
BI160677 epithelioid carcinoma cell line, Pancreas .i 86 to 714 1 to 635       635/657
(96 %)
9 diff
(98.7 %id)
BM706532 eye, eye anterior segment .i 86 to 612 11 to 537       527/537
(98 %)
7 diff
(98.7 %id)
BQ959014 epidermoid carcinoma, cell line, lung .i 94 to 646 1 to 558       558/1142
(48 %)
17 diff
(98.6 %id)
CN308498 embryonic stem cells, cell lines H1, H7, andH9 .i 100 to 665 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
AI692778 carcinoid, lung .i 108 to 672 1 to 565     Submitted on the opposite strand 565/565
(100 %)
0 diff
(100 %id)
BU628878 cell lines, Chondrosarcoma .i 124 to 723 618 to 19   AAA   600/600
(100 %)
1 diff
(99.9 %id)
BU940473 mixed (pool of 40 RNAs) .i 268 to 1064 1 to 810       810/811
(99 %)
33 diff
(96.0 %id)
CN308497 embryonic stem cells, DMSO-treated H9 cellline .j 1 to 469 1 to 469 exact tiling clone,   469/469
(100 %)
0 diff
(100 %id)
AA594251 colon, colon tumor RER+ .k 1 to 511 1 to 508 A17Q R18G L19W A20L L21* tiling clone, Submitted on the opposite strand 508/508
(100 %)
5 diff
(99.1 %id)
AW340643 pooled .k 55 to 513 1 to 459   tiling clone, Submitted on the opposite strand 459/459
(100 %)
0 diff
(100 %id)
BX648821 human uterus endothel primary cell culture Gene C11orf17, variant not shown       available from DKFZ, AAA This clone was ignored    
DB299305 cerebellum Gene C11orf17, variant not shown         This clone was ignored    
DA103420 cerebellum Gene C11orf17, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI