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Gene C10orf47TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
84 supporting clones for gene C10orf47 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CF141212 CNCAP(3)T-225 cell line, Prostate .a 1 to 474 1 to 474   tiling clone,   474/474
(100 %)
7 diff
(98.6 %id)
TI_154171849   .a 7 to 564 79 to 636       558/560
(99 %)
6 diff
(99.0 %id)
CB989737 Human Placenta, placenta .a 62 to 552 23 to 513       491/877
(55 %)
12 diff
(98.7 %id)
CD109834 Human Placenta, placenta .a 62 to 753 23 to 720       698/837
(83 %)
18 diff
(97.9 %id)
BM549327 astrocytoma grade IV, cell line, brain .a 92 to 750 26 to 689       664/1253
(52 %)
46 diff
(96.4 %id)
BM809799 astrocytoma grade IV, cell line, brain .a 95 to 845 21 to 780       760/1307
(58 %)
28 diff
(97.9 %id)
BM919494 pooled pancreas and spleen .a 101 to 883 18 to 807       790/1053
(75 %)
20 diff
(98.2 %id)
BX458390 placenta .a 106 to 1002 22 to 915       894/915
(97 %)
13 diff
(98.6 %id)
TI_57234882   .a 106 to 715 32 to 645       612/647
(94 %)
13 diff
(98.0 %id)
BG423026 Kidney, renal cell adenocarcinoma .a 108 to 746 1 to 639       639/640
(99 %)
7 diff
(99.0 %id)
BC048800 Blood, adult leukocytes .a 109 to 3439 1 to 3331 P323R tiling clone, available from MGC, AAA   3331/3331
(100 %)
3 diff
(100.0 %id)
BI909646 leukocyte .a 109 to 715 1 to 611       609/613
(99 %)
8 diff
(98.7 %id)
NM_153256.3   .a 109 to 3439 1 to 3331 exact RefSeq, AAA   3331/3331
(100 %)
0 diff
(100 %id)
CR621861 HeLa cells Cot 25-normalized .a 119 to 2012 1 to 1894 exact tiling clone,   1894/1894
(100 %)
0 diff
(100 %id)
BX362705   .a 119 to 1063 1 to 941       941/941
(100 %)
15 diff
(98.5 %id)
TI_1948224440   .a 257 to 789 125 to 659       535/1441
(37 %)
21 diff
(98.6 %id)
TI_1948224752   .a 257 to 756 108 to 610       503/1143
(44 %)
27 diff
(97.7 %id)
TI_1948225074   .a 257 to 766 122 to 632       511/1160
(44 %)
26 diff
(97.8 %id)
TI_1948225393   .a 257 to 725 125 to 593       469/1172
(40 %)
19 diff
(98.4 %id)
EL735994 mixed .a 263 to 847 1 to 585       585/585
(100 %)
0 diff
(100 %id)
AI056660 liver and spleen .a 426 to 853 435 to 8       428/435
(98 %)
1 diff
(99.8 %id)
BI761706 pooled colon, kidney, stomach .a 802 to 954 1 to 153   available from MGC,   153/153
(100 %)
4 diff
(97.4 %id)
TI_57149239   .a 802 to 1503 1 to 702       702/708
(99 %)
3 diff
(99.6 %id)
BC029134 Colon, Kidney, Stomach, adult, whole pooled .a 808 to 2039 1 to 1232   available from MGC, AAA   1232/1232
(100 %)
0 diff
(100 %id)
BC040040 Colon, Kidney, Stomach, adult, whole pooled .a 808 to 2039 1 to 1232   available from MGC, AAA   1232/1232
(100 %)
0 diff
(100 %id)
CX164486 human embryonic stem cells differentiated toan early endodermal cell type .a 883 to 1613 1 to 731       731/731
(100 %)
0 diff
(100 %id)
EC524600 Prostate .a 906 to 1013 1 to 108       108/119
(90 %)
3 diff
(97.5 %id)
EC582561 Prostate .a 907 to 1013 1 to 104       104/115
(90 %)
5 diff
(95.7 %id)
BX327528   .a 924 to 1857 1 to 935       935/935
(100 %)
15 diff
(98.4 %id)
BX362704   .a 1037 to 2012 968 to 1       968/968
(100 %)
61 diff
(93.7 %id)
BC007547 Muscle, rhabdomyosarcoma .a 1191 to 2041 1 to 851   available from MGC, AAA   851/851
(100 %)
2 diff
(99.8 %id)
BU621175 cell lines, Chondrosarcoma .a 1296 to 2041 763 to 19   AAA   745/745
(100 %)
2 diff
(99.8 %id)
CA432416 cell lines, Chondrosarcoma .a 1367 to 2042 694 to 19   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 676/676
(100 %)
0 diff
(100 %id)
BU856973 adenocarcinoma, cell line, breast .a 1405 to 2041 1 to 637   AAA   637/637
(100 %)
2 diff
(99.7 %id)
CA422643 cell lines, Chondrosarcoma .a 1466 to 2042 595 to 19   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 577/577
(100 %)
0 diff
(100 %id)
BM725714 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1503 to 2036 1 to 534   AAA   534/534
(100 %)
1 diff
(99.9 %id)
AW182452 pooled .a 1535 to 2051 527 to 11   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 517/517
(100 %)
1 diff
(99.9 %id)
AI640157 Kidney .a 1540 to 2045 510 to 4       507/510
(99 %)
0 diff
(100 %id)
AI890424 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1550 to 2041 494 to 3       492/494
(99 %)
0 diff
(100 %id)
AW793562 uterus .a 1568 to 1960 396 to 3       394/408
(96 %)
0 diff
(100 %id)
AW474326 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1575 to 2017 444 to 1       444/444
(100 %)
2 diff
(99.6 %id)
BE250569 muscle, rhabdomyosarcoma .a 1575 to 1914 484 to 834   available from MGC,   351/834
(42 %)
6 diff
(99.3 %id)
AW130973 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 1613 to 2051 439 to 1       439/439
(100 %)
0 diff
(100 %id)
BX091168 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1620 to 2041 436 to 15   AAA   422/422
(100 %)
0 diff
(100 %id)
AW150989 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1625 to 2036 413 to 1       413/413
(100 %)
3 diff
(99.3 %id)
AI288965 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1641 to 2035 402 to 7       396/402
(98 %)
0 diff
(100 %id)
AI744015 Kidney .a 1695 to 2008 314 to 1       314/314
(100 %)
1 diff
(99.7 %id)
BE465736 Kidney .a 1695 to 2008 314 to 1       314/314
(100 %)
0 diff
(100 %id)
AI636121 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1747 to 2045 301 to 3       299/301
(99 %)
0 diff
(100 %id)
AI651429 Kidney .a 1747 to 2037 312 to 23   AAA   290/295
(98 %)
0 diff
(100 %id)
AV650220 corresponding non cancerous liver tissue .a 1763 to 2146 1 to 385     Submitted on the opposite strand 385/385
(100 %)
1 diff
(99.8 %id)
BM768240 stomach .a 1775 to 2036 1 to 262   AAA   262/262
(100 %)
0 diff
(100 %id)
M91487   .a 1784 to 2037 262 to 11       252/266
(94 %)
0 diff
(100 %id)
AI985781 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1798 to 2039 242 to 1       242/242
(100 %)
1 diff
(99.6 %id)
FN070602 breast carcinoma .a 1854 to 1956 1 to 102       102/102
(100 %)
1 diff
(99.1 %id)
C01117   .a 1972 to 2036 1 to 66       66/66
(100 %)
1 diff
(98.5 %id)
CB145739 Liver .a 2060 to 2442 1 to 383       383/383
(100 %)
4 diff
(99.0 %id)
TI_149299683   .a 2663 to 3439 854 to 89   AAA   766/930
(82 %)
19 diff
(98.0 %id)
BG025251 lymph, lymphoma, cell line .a 2684 to 3445 1 to 765       765/1051
(72 %)
20 diff
(98.1 %id)
R11012 liver and spleen .a 2744 to 3044 1 to 304       304/310
(98 %)
5 diff
(98.4 %id)
BX117776 liver and spleen .a 2746 to 3430 1 to 684       684/684
(100 %)
3 diff
(99.6 %id)
BM975981 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2754 to 3439 703 to 19   AAA   685/685
(100 %)
4 diff
(99.5 %id)
EH347779   .a 2765 to 2842 1 to 81       81/81
(100 %)
3 diff
(96.3 %id)
TI_149275375   .a 2822 to 3445 748 to 109       640/807
(79 %)
0 diff
(100 %id)
BF589207 pooled .a 2918 to 3439 522 to 1       522/522
(100 %)
1 diff
(99.9 %id)
AW274446 Kidney .a 2944 to 3439 509 to 12   AAA   498/498
(100 %)
10 diff
(98.0 %id)
AW189233 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2989 to 3441 456 to 4       453/456
(99 %)
0 diff
(100 %id)
BU676600 lung, Primary Lung Epithelial Cells .a 2997 to 3438 459 to 19   AAA   441/441
(100 %)
4 diff
(99.1 %id)
AA701297 liver and spleen .a 3001 to 3439 438 to 1       438/438
(100 %)
2 diff
(99.6 %id)
AA968424 pooled .a 3007 to 3431 425 to 1       425/425
(100 %)
4 diff
(99.1 %id)
AI335619 uterus .a 3026 to 3439 414 to 1       414/414
(100 %)
1 diff
(99.8 %id)
AI032517 liver and spleen .a 3028 to 3439 412 to 1       412/412
(100 %)
2 diff
(99.6 %id)
AW044247 pooled .a 3119 to 3443 347 to 23   tiling clone, AAA   325/325
(100 %)
20 diff
(93.9 %id)
AA954229 2 pooled tumors (clear cell type), Kidney .a 3189 to 3439 278 to 28   AAA   251/251
(100 %)
4 diff
(98.5 %id)
R11013 liver and spleen .a 3283 to 3441 159 to 1       159/161
(98 %)
5 diff
(96.9 %id)
R02002 liver and spleen .b 1 to 318 1 to 328   tiling clone,   328/355
(92 %)
19 diff
(94.7 %id)
R06845 liver and spleen .b 1 to 464 1 to 469   tiling clone,   437/472
(92 %)
26 diff
(94.5 %id)
R06846 liver and spleen .b 473 to 812 360 to 19   tiling clone,   342/360
(95 %)
3 diff
(99.2 %id)
R02003 liver and spleen .b 566 to 812 255 to 9   tiling clone,   247/258
(95 %)
3 diff
(98.9 %id)
BM043032 carcinoma, cell line, Prostate .c 1 to 660 1 to 666 G29W G30R S31Q L32P E33G ... tiling clone,   666/778
(85 %)
20 diff
(97.5 %id)
BX281006 testis .d-u -8 to 434 21 to 463   tiling clone,   443/465
(95 %)
6 diff
(98.8 %id)
AW363115 colon .d-u 281 to 911 1 to 629   tiling clone,   629/629
(100 %)
17 diff
(97.3 %id)
AA349263 adrenal gland .e-u 1 to 323 1 to 323 R38C tiling clone,   323/324
(99 %)
5 diff
(98.5 %id)
BC017269 Kidney, renal cell adenocarcinoma Gene C10orf47, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
AA242985 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene C10orf47, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
AA251971 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene C10orf47, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
BG761546 melanotic melanoma, high MDR (cell line), skin Gene C10orf47, variant not shown         Suspected internal deletion, this clone was ignored    
TI_1948225075   Gene C10orf47, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C