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Gene CCDC109ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
270 supporting clones for gene CCDC109A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA063593 cerebellum .a -11 to 548 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA792281 brain .a -10 to 437 37 to 485   capped   449/484
(92 %)
6 diff
(98.8 %id)
DA886881   .a -10 to 543 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DN999562   .a -10 to 617 1 to 628       628/628
(100 %)
5 diff
(99.3 %id)
BI550380 brain, hippocampus .a -9 to 653 1 to 660       660/660
(100 %)
14 diff
(97.9 %id)
DB155516 thymus .a 1 to 583 9 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
AK075439 placenta .a 1 to 2929 7 to 2934 G238V G239A A241P Y242T M243W ...     2934/2934
(100 %)
3 diff
(99.9 %id)
DB480478 hippocampus .a 1 to 501 7 to 507       507/507
(100 %)
0 diff
(100 %id)
BM828878 Ascites, stomach .a 1 to 339 7 to 345       345/345
(100 %)
1 diff
(99.8 %id)
DA060878 cerebellum .a 1 to 542 7 to 549   capped   548/553
(99 %)
2 diff
(99.7 %id)
DA086002 cerebellum .a 1 to 566 7 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA112725 cerebellum .a 1 to 598 7 to 604   capped   603/603
(100 %)
0 diff
(100 %id)
DA440657 tongue, tumor tissue .a 1 to 581 7 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA448246 tongue, tumor tissue .a 1 to 544 7 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA454791 tongue, tumor tissue .a 1 to 557 7 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA501606 brain .a 1 to 567 7 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA516456 brain .a 1 to 542 7 to 550   capped   549/552
(99 %)
4 diff
(99.3 %id)
DA573863   .a 1 to 574 7 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA638498 Liver .a 1 to 558 7 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA666275   .a 1 to 503 7 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
DA717307   .a 1 to 547 7 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA738205   .a 1 to 812 7 to 818   capped   817/817
(100 %)
10 diff
(98.8 %id)
DA776902 brain .a 1 to 574 7 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA782749 brain .a 1 to 567 7 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA783140 brain .a 1 to 576 7 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
DA785950 brain .a 1 to 579 7 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA791724 brain .a 1 to 522 14 to 535   capped   527/527
(100 %)
0 diff
(100 %id)
DA830025 placenta .a 1 to 763 7 to 777   capped   776/897
(86 %)
16 diff
(98.3 %id)
DA839805 placenta .a 1 to 553 7 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA919261 small intestine .a 1 to 560 7 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB016978 esophageal, tumor tissue .a 1 to 561 7 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB123931 thymus .a 1 to 565 7 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA989738 synovial membrane tissue from rheumatioidarthritis .a 1 to 528 6 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA500470 brain .a 1 to 560 5 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BJ995974 hepatoblastoma .a 1 to 415 3 to 417       417/417
(100 %)
0 diff
(100 %id)
AK315519 tongue .a 1 to 1059 2 to 1060 S107P D142Y     1060/1060
(100 %)
2 diff
(99.9 %id)
DA067461 cerebellum .a 1 to 569 3 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA377739 thalamus .a 1 to 630 3 to 632   tiling clone, capped   631/631
(100 %)
0 diff
(100 %id)
DA711327   .a 1 to 539 3 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
BG703750 brain, hippocampus .a 1 to 700 8 to 711       702/712
(98 %)
11 diff
(98.5 %id)
DA766587 tongue .a 1 to 562 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
CV024732 mixed .a 4 to 639 1 to 636       636/636
(100 %)
0 diff
(100 %id)
TI_1948123022   .a 4 to 462 124 to 584   fully sequenced,   461/584
(78 %)
9 diff
(98.5 %id)
TI_1948123170   .a 4 to 462 123 to 580   fully sequenced,   458/580
(78 %)
10 diff
(98.3 %id)
BM924699 pooled colon, kidney, stomach .a 7 to 868 11 to 886       876/1138
(76 %)
31 diff
(97.3 %id)
CN368153 embryonic stem cells, cell lines H1, H7, andH9 .a 8 to 710 1 to 703       703/703
(100 %)
1 diff
(99.9 %id)
CV812957 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 11 to 666 1 to 657       657/896
(73 %)
9 diff
(99.0 %id)
CN368152 embryonic stem cells, cell lines H1, H7, andH9 .a 14 to 606 1 to 593       593/593
(100 %)
2 diff
(99.7 %id)
CX873410 embryonic stem .a 15 to 823 1 to 809       809/809
(100 %)
0 diff
(100 %id)
CN368154 embryonic stem cells, cell lines H1, H7, andH9 .a 23 to 661 1 to 639       639/639
(100 %)
0 diff
(100 %id)
BQ722670 sympathetic trunk .a 25 to 736 1 to 712       712/966
(73 %)
28 diff
(97.2 %id)
CN368151 embryonic stem cells, cell lines H1, H7, andH9 .a 32 to 731 1 to 700       700/700
(100 %)
6 diff
(99.2 %id)
DA993590 synovial membrane tissue from rheumatioidarthritis .a 81 to 597 55 to 571   capped   517/570
(90 %)
6 diff
(99.0 %id)
AA314430 colon .a 94 to 587 1 to 492       492/492
(100 %)
9 diff
(98.2 %id)
TI_44169504   .a 107 to 653 193 to 741       549/741
(74 %)
13 diff
(98.3 %id)
BX500725 Liver .a 131 to 639 17 to 525       509/525
(96 %)
2 diff
(99.7 %id)
BI465218 testis .a 146 to 627 155 to 643       489/643
(76 %)
17 diff
(97.4 %id)
DN913579   .a 152 to 733 37 to 618       582/618
(94 %)
8 diff
(98.8 %id)
DA581619 lung .a 152 to 472 227 to 547   capped   321/546
(58 %)
6 diff
(99.0 %id)
BC034235 testis .a 154 to 2929 172 to 2947 exact tiling clone, available from MGC, AAA   2947/2947
(100 %)
2 diff
(100.0 %id)
DA578884   .a 154 to 609 100 to 557   capped   458/556
(82 %)
6 diff
(99.0 %id)
BI560828 testis .a 154 to 715 177 to 743       743/1057
(70 %)
22 diff
(98.0 %id)
TI_44349233   .a 154 to 715 259 to 825   AAA   738/1125
(65 %)
23 diff
(98.0 %id)
NM_138357.1   .a 154 to 2929 172 to 2947 exact RefSeq, AAA   2947/2947
(100 %)
2 diff
(100.0 %id)
BF902787 marrow .a 223 to 481 260 to 2     Submitted on the opposite strand 259/260
(99 %)
0 diff
(100 %id)
CX758486 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 233 to 943 1 to 709     Submitted on the opposite strand 709/709
(100 %)
2 diff
(99.8 %id)
AA323841 brain, cerebellum .a 242 to 580 1 to 340       340/340
(100 %)
2 diff
(99.5 %id)
AW961991   .a 243 to 903 1 to 661       661/662
(99 %)
8 diff
(98.8 %id)
DB211141 trachea .a 336 to 819 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
CX755115 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 337 to 1081 1 to 744     Submitted on the opposite strand 744/744
(100 %)
2 diff
(99.8 %id)
BF512506   .a 339 to 835 18 to 514     Submitted on the opposite strand 497/497
(100 %)
3 diff
(99.4 %id)
AA280913 germinal center B cell .a 349 to 733 1 to 386       386/386
(100 %)
3 diff
(99.3 %id)
TI_1948123023   .a 432 to 1058 751 to 124   fully sequenced,   628/751
(83 %)
1 diff
(99.9 %id)
TI_1948123171   .a 432 to 1058 753 to 126   fully sequenced,   628/753
(83 %)
0 diff
(100 %id)
AW408821 lymph .a 436 to 922 1 to 487       487/487
(100 %)
4 diff
(99.2 %id)
TI_154148805   .a 442 to 942 85 to 585       501/501
(100 %)
1 diff
(99.9 %id)
BM802145 duodenal adenocarcinoma, cell line, small intestine .a 463 to 1365 1 to 922       922/990
(93 %)
39 diff
(96.1 %id)
BU173006 melanotic melanoma, skin .a 484 to 1268 18 to 809       792/823
(96 %)
16 diff
(98.1 %id)
BF034116 adenocarcinoma, ovary .a 485 to 1183 1 to 697       697/933
(74 %)
19 diff
(98.0 %id)
BP295632   .a 496 to 1078 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BX431657 brain, fetal brain .a 498 to 1314 1 to 817       817/862
(94 %)
11 diff
(98.8 %id)
BP268002 thyroid .a 541 to 1119 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
BQ368381 placenta_normal .a 585 to 1154 580 to 12       569/580
(98 %)
1 diff
(99.9 %id)
BF831823 head_neck .a 597 to 780 13 to 205       193/205
(94 %)
14 diff
(93.2 %id)
BE719063 head_neck .a 599 to 982 12 to 394       383/394
(97 %)
7 diff
(98.3 %id)
BX482619   .a 605 to 1241 1 to 638       636/638
(99 %)
0 diff
(100 %id)
AK025699   .a 641 to 2928 1 to 2288   tiling clone, available from FLJ, AAA   2288/2288
(100 %)
2 diff
(100.0 %id)
BP239888 Liver .a 641 to 1215 1 to 576       576/584
(98 %)
10 diff
(98.3 %id)
BI335929 skin .a 663 to 1022 360 to 1       360/360
(100 %)
0 diff
(100 %id)
DA022047   .a 672 to 1239 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BM825836 Ascites, stomach .a 690 to 1133 1 to 444       444/444
(100 %)
1 diff
(99.8 %id)
BU520934 leiomyosarcoma, uterus .a 715 to 1544 16 to 859       844/860
(98 %)
29 diff
(96.7 %id)
BG505195 embryonal carcinoma, testis .a 753 to 1450 1 to 697       697/697
(100 %)
10 diff
(98.6 %id)
DA020439   .a 789 to 1372 2 to 585   capped   584/584
(100 %)
4 diff
(99.4 %id)
BF796952 lymph, lymphoma, cell line .a 806 to 1584 1 to 778       778/974
(79 %)
25 diff
(97.5 %id)
DB027862 testis .a 808 to 1405 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DB200107 trachea .a 811 to 1387 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
Z78394 brain .a 821 to 1629 1 to 805       809/805
(100 %)
14 diff
(98.3 %id)
DA049345   .a 844 to 1425 2 to 584   capped   583/584
(99 %)
2 diff
(99.7 %id)
BE883814 leiomyosarcoma, uterus .a 863 to 1357 16 to 511       496/512
(96 %)
12 diff
(97.7 %id)
BP344884 synovial membrane .a 867 to 1445 1 to 579       579/579
(100 %)
1 diff
(99.9 %id)
DN913578   .a 880 to 1542 653 to 1       653/653
(100 %)
13 diff
(98.1 %id)
DA746286   .a 900 to 1464 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BI054113 placenta_normal .a 916 to 1376 458 to 1       458/458
(100 %)
8 diff
(98.3 %id)
CV575739 cornea, eye .a 924 to 1049 1 to 126       126/126
(100 %)
0 diff
(100 %id)
DA076628 cerebellum .a 961 to 1544 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
CD519985 White Matter .a 970 to 1753 1 to 788       788/845
(93 %)
8 diff
(99.1 %id)
BX478050   .a 990 to 1588 1 to 599       599/599
(100 %)
0 diff
(100 %id)
BX496911 Liver .a 1010 to 1230 1 to 220       220/220
(100 %)
5 diff
(97.8 %id)
BM754070 stomach .a 1049 to 1359 1 to 311       311/311
(100 %)
0 diff
(100 %id)
DN920040   .a 1052 to 1382 1 to 331       331/331
(100 %)
3 diff
(99.1 %id)
AL703234 human skeletal muscle .a 1099 to 1762 1 to 664       664/664
(100 %)
1 diff
(99.9 %id)
BQ336199 marrow .a 1119 to 1428 6 to 312       307/312
(98 %)
6 diff
(98.1 %id)
CX785788 human embryonic stem cells .a 1131 to 1905 1 to 775       775/775
(100 %)
0 diff
(100 %id)
AI086287 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1161 to 1488 328 to 1       328/328
(100 %)
0 diff
(100 %id)
DA369953 subthalamic nucleus .a 1182 to 1754 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
AW891409 nervous_tumor .a 1199 to 1595 18 to 415       398/425
(93 %)
11 diff
(97.5 %id)
BE536264 cervix .a 1251 to 2020 1 to 777       777/830
(93 %)
27 diff
(96.8 %id)
BG611111 adenocarcinoma, Prostate .a 1290 to 2084 1 to 798       798/802
(99 %)
17 diff
(97.9 %id)
BP377548 uterus .a 1304 to 1883 1 to 579       579/582
(99 %)
2 diff
(99.7 %id)
DA890876 rectum .a 1306 to 1769 2 to 466   capped   465/465
(100 %)
1 diff
(99.8 %id)
DA074535 cerebellum .a 1322 to 1897 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
BP204395 coronary artery .a 1333 to 1902 1 to 570       570/570
(100 %)
14 diff
(97.6 %id)
CD105864 brain, Pituitary .a 1387 to 2219 1 to 832       832/832
(100 %)
3 diff
(99.7 %id)
CX782054 human embryonic stem cells .a 1472 to 2355 1 to 884       884/884
(100 %)
0 diff
(100 %id)
BF028507 bladder, carcinoma, cell line .a 1484 to 2157 1 to 663       663/837
(79 %)
23 diff
(97.3 %id)
BE546899 cervical carcinoma cell line, cervix .a 1491 to 2197 1 to 704       704/708
(99 %)
17 diff
(97.6 %id)
EH352082   .a 1496 to 1562 1 to 67       67/67
(100 %)
0 diff
(100 %id)
BM782215 stomach .a 1505 to 2200 1 to 695       695/695
(100 %)
1 diff
(99.9 %id)
BM819807 stomach .a 1505 to 1715 1 to 211       211/211
(100 %)
1 diff
(99.6 %id)
BE545847 cervical carcinoma cell line, cervix .a 1535 to 2209 1 to 678       678/777
(87 %)
20 diff
(97.5 %id)
BE613739 leiomyosarcoma, uterus .a 1546 to 2298 1 to 740       740/786
(94 %)
40 diff
(95.0 %id)
BQ372932 prostate_tumor .a 1589 to 1904 340 to 26       315/340
(92 %)
0 diff
(100 %id)
BQ638078 eye, retina .a 1594 to 2221 1 to 628       628/628
(100 %)
0 diff
(100 %id)
BF037584 adenocarcinoma, ovary .a 1601 to 2307 1 to 680       680/906
(75 %)
37 diff
(96.0 %id)
BF790544 muscle (skeletal) .a 1615 to 2390 1 to 763       763/813
(93 %)
30 diff
(96.4 %id)
BQ924354 leiomyosarcoma, uterus .a 1633 to 2305 1 to 678       678/979
(69 %)
29 diff
(97.1 %id)
BQ228499 embryonal carcinoma, cell line, testis .a 1659 to 2527 1 to 871       871/871
(100 %)
3 diff
(99.7 %id)
AA330244   .a 1685 to 1980 1 to 298       298/298
(100 %)
2 diff
(99.4 %id)
BM550689 melanotic melanoma, skin .a 1736 to 2727 1 to 996       996/1080
(92 %)
29 diff
(97.4 %id)
BG821588 adenocarcinoma cell line, colon .a 1751 to 2503 1 to 762       762/762
(100 %)
18 diff
(97.7 %id)
BX418875 brain, fetal brain .a 1793 to 2057 1 to 265       265/265
(100 %)
5 diff
(98.2 %id)
BI334888 cervical carcinoma cell line, cervix .a 1829 to 2651 12 to 830       819/832
(98 %)
22 diff
(97.4 %id)
BI333684 cervical carcinoma cell line, cervix .a 1829 to 2620 14 to 805       792/806
(98 %)
11 diff
(98.7 %id)
CB129611 Liver .a 1831 to 2283 1 to 453       453/453
(100 %)
0 diff
(100 %id)
CK429538 eye, lacrimal gland .a 1841 to 2477 1 to 637       637/637
(100 %)
0 diff
(100 %id)
BU155627 melanotic melanoma, skin .a 1863 to 2667 1 to 809       809/818
(98 %)
4 diff
(99.6 %id)
CB128760 Liver .a 1921 to 2481 1 to 561       561/561
(100 %)
2 diff
(99.7 %id)
BQ303736 breast .a 1923 to 2355 441 to 10       432/447
(96 %)
0 diff
(100 %id)
AA224518 brain, neuroepithelial cells .a 1926 to 2459 1 to 531   fully sequenced,   531/531
(100 %)
7 diff
(98.7 %id)
AW387178 stomach .a 1985 to 2545 572 to 14       559/572
(97 %)
0 diff
(100 %id)
BM728983 eye, fetal eye .a 1998 to 2731 1 to 730       730/730
(100 %)
4 diff
(99.5 %id)
TI_154032145   .a 2003 to 2482 543 to 64       480/1071
(44 %)
0 diff
(100 %id)
BF881383 lung_tumor .a 2013 to 2326 338 to 25     Submitted on the opposite strand 314/338
(92 %)
0 diff
(100 %id)
BI014442 lung_tumor .a 2013 to 2332 333 to 15       319/333
(95 %)
7 diff
(97.9 %id)
BX412770 brain, fetal brain .a 2072 to 2927 865 to 1       865/872
(99 %)
23 diff
(97.4 %id)
BE614614 leiomyosarcoma, uterus .a 2080 to 2902 834 to 13       822/839
(97 %)
0 diff
(100 %id)
AA349239 adrenal gland .a 2081 to 2388 1 to 309       309/309
(100 %)
1 diff
(99.7 %id)
BI771334 pooled lung and spleen .a 2219 to 2321 628 to 732       648/732
(88 %)
75 diff
(89.8 %id)
TI_149272963   .a 2228 to 2929 786 to 86   AAA   701/992
(70 %)
2 diff
(99.8 %id)
R80862 placenta .a 2229 to 2569 1 to 351   fully sequenced,   351/351
(100 %)
5 diff
(98.6 %id)
TI_149284076   .a 2241 to 2929 775 to 87   AAA   689/789
(87 %)
3 diff
(99.7 %id)
BU617819 cell lines, Chondrosarcoma .a 2244 to 2929 704 to 19   AAA   686/686
(100 %)
2 diff
(99.8 %id)
BJ995975 hepatoblastoma .a 2372 to 2894 523 to 1       523/523
(100 %)
0 diff
(100 %id)
DB370804   .a 2388 to 2927 531 to 1       531/555
(95 %)
13 diff
(97.7 %id)
AA224554 brain, neuroepithelial cells .a 2429 to 2900 471 to 1   fully sequenced,   471/471
(100 %)
4 diff
(99.2 %id)
DB375016 placenta .a 2455 to 2929 473 to 2       472/474
(99 %)
0 diff
(100 %id)
R80863 placenta .a 2539 to 2928 396 to 1   fully sequenced,   396/396
(100 %)
2 diff
(99.5 %id)
BC010682 Eye, retinoblastoma .b 1 to 2841 1 to 2841 exact tiling clone, available from MGC, AAA   2841/2841
(100 %)
0 diff
(100 %id)
BE778278 eye, retinoblastoma .b 22 to 777 1 to 750   available from MGC,   750/899
(83 %)
25 diff
(97.3 %id)
AK128016 testis .c 1 to 3223 2 to 3224 exact tiling clone, available from FLJ,   3224/3224
(100 %)
2 diff
(100.0 %id)
DB059209 testis .c 1 to 520 2 to 521   capped   520/544
(95 %)
2 diff
(99.7 %id)
BF513607   .c 104 to 708 1 to 605     Submitted on the opposite strand 605/609
(99 %)
1 diff
(99.9 %id)
TI_149305849   .c 2528 to 3223 783 to 87   AAA   697/935
(74 %)
8 diff
(99.2 %id)
AA634686 lung .c 2535 to 2777 1 to 237       237/244
(97 %)
9 diff
(96.4 %id)
DA458284 tongue, tumor tissue .c 2551 to 3112 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
BU675369 lung, Primary Lung Epithelial Cells .c 2559 to 3223 682 to 19   AAA   664/664
(100 %)
1 diff
(99.9 %id)
CA424327 cell lines, Chondrosarcoma .c 2559 to 3221 680 to 19   AAA   662/662
(100 %)
1 diff
(99.9 %id)
BM978554 lung, Primary Lung Epithelial Cells .c 2597 to 3223 642 to 19   AAA   624/624
(100 %)
3 diff
(99.6 %id)
AA579630 colon, colon tumor RER+ .c 2618 to 3225 613 to 6   tiling clone,   608/613
(99 %)
0 diff
(100 %id)
BM783000 stomach .c 2626 to 3215 1 to 590       590/590
(100 %)
17 diff
(97.2 %id)
W38742 parathyroid gland, parathyroid tumor .c 2639 to 2901 1 to 265       265/265
(100 %)
4 diff
(98.5 %id)
CU442789 epidermis .c 2646 to 2910 16 to 280       265/334
(79 %)
1 diff
(99.8 %id)
BF821731 kidney_tumor .c 2648 to 2912 261 to 2     Submitted on the opposite strand 260/261
(99 %)
0 diff
(100 %id)
BF821740 kidney_tumor .c 2649 to 2916 273 to 14     Submitted on the opposite strand 260/273
(95 %)
0 diff
(100 %id)
AA582960 colon, colon tumor RER+ .c 2650 to 3225 577 to 2       576/577
(99 %)
0 diff
(100 %id)
BP428642   .c 2677 to 3076 1 to 400       400/400
(100 %)
2 diff
(99.5 %id)
BM984429 lung, Primary Lung Epithelial Cells .c 2680 to 3223 562 to 19   AAA   544/544
(100 %)
0 diff
(100 %id)
AI885325 anaplastic oligodendroglioma, brain .c 2681 to 3221 542 to 2       541/542
(99 %)
0 diff
(100 %id)
AA524291 colon .c 2683 to 3223 557 to 26   AAA   532/599
(88 %)
21 diff
(96.5 %id)
BM766897 Ascites, stomach .c 2687 to 3225 1 to 539       539/542
(99 %)
2 diff
(99.7 %id)
CU453906 epidermis .c 2689 to 2986 10 to 307       298/322
(92 %)
2 diff
(99.4 %id)
AI936536 pooled .c 2689 to 3225 537 to 1       537/537
(100 %)
3 diff
(99.5 %id)
DB339109 testis .c 2699 to 3223 525 to 1       525/525
(100 %)
2 diff
(99.7 %id)
AI041202   .c 2705 to 3225 522 to 2       521/522
(99 %)
0 diff
(100 %id)
AW089837 ovary, tumor, 5 pooled (see description) .c 2726 to 3225 506 to 3       504/506
(99 %)
0 diff
(100 %id)
EC455653 Prostate .c 2752 to 2850 1 to 98       98/98
(100 %)
1 diff
(99.0 %id)
AA846846   .c 2752 to 3221 473 to 4       470/473
(99 %)
0 diff
(100 %id)
BE931770 head_neck .c 2754 to 3084 12 to 340       329/344
(95 %)
10 diff
(97.1 %id)
AA582557 Kidney, kidney tumor .c 2764 to 3194 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AI201511 Prostate .c 2764 to 3222 458 to 1       458/458
(100 %)
2 diff
(99.6 %id)
DB549233 hippocampus .c 2767 to 3223 1 to 457     Submitted on the opposite strand 457/457
(100 %)
1 diff
(99.8 %id)
DB523948 testis .c 2768 to 3223 1 to 456     Submitted on the opposite strand 456/456
(100 %)
5 diff
(99.0 %id)
AI039992 senescent fibroblast .c 2770 to 3225 460 to 5       456/460
(99 %)
0 diff
(100 %id)
AW572949 pooled .c 2772 to 3224 453 to 1       453/453
(100 %)
4 diff
(99.2 %id)
DB516496 testis .c 2781 to 3225 1 to 444     Submitted on the opposite strand 444/445
(99 %)
8 diff
(98.3 %id)
AI798847 pooled .c 2786 to 3222 449 to 14   AAA   436/436
(100 %)
6 diff
(98.7 %id)
AA091136   .c 2792 to 2898 1 to 108       108/110
(98 %)
7 diff
(93.7 %id)
T03578   .c 2795 to 3223 433 to 1       433/437
(99 %)
12 diff
(97.3 %id)
DB525232 testis .c 2797 to 3223 1 to 428   AAA Submitted on the opposite strand 428/428
(100 %)
4 diff
(99.1 %id)
AW173427 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 2798 to 3224 427 to 1       427/427
(100 %)
2 diff
(99.6 %id)
AI808766 pooled .c 2799 to 3223 437 to 13   AAA   425/425
(100 %)
8 diff
(98.2 %id)
EC454297 Prostate .c 2801 to 2889 89 to 1       89/94
(94 %)
1 diff
(99.0 %id)
EC557774 Prostate .c 2801 to 2891 91 to 1       91/93
(97 %)
0 diff
(100 %id)
H70647 liver and spleen .c 2804 to 3225 1 to 428       428/440
(97 %)
18 diff
(96.0 %id)
AW468289 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .c 2805 to 3222 419 to 2       418/419
(99 %)
0 diff
(100 %id)
AI809936 pooled .c 2809 to 3223 427 to 13   AAA   415/415
(100 %)
2 diff
(99.6 %id)
AI863290 brain, tumor, 5 pooled (see description) .c 2811 to 3223 426 to 14   AAA   413/413
(100 %)
0 diff
(100 %id)
T77712 liver and spleen .c 2814 to 3225 1 to 422   fully sequenced,   422/422
(100 %)
13 diff
(97.0 %id)
AA884837 pooled .c 2814 to 3223 410 to 1       410/410
(100 %)
0 diff
(100 %id)
BX111515 liver and spleen .c 2815 to 3223 1 to 410   AAA   410/410
(100 %)
1 diff
(99.8 %id)
H91024 liver and spleen .c 2815 to 3197 1 to 389       389/395
(98 %)
9 diff
(97.8 %id)
AI830058 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 2816 to 3220 406 to 1       406/415
(97 %)
10 diff
(97.6 %id)
AA824622 germinal center B cell .c 2821 to 3223 421 to 19   AAA   403/403
(100 %)
1 diff
(99.8 %id)
AA769229 germinal center B cell .c 2822 to 3223 413 to 12   AAA   402/402
(100 %)
0 diff
(100 %id)
AI243818 pooled .c 2828 to 3223 408 to 13   AAA   396/396
(100 %)
4 diff
(99.0 %id)
AA736387 heart .c 2830 to 3223 394 to 1       394/394
(100 %)
0 diff
(100 %id)
AI264722 adenocarcinoma, Pancreas .c 2833 to 3225 397 to 5       393/397
(98 %)
0 diff
(100 %id)
AI167988 senescent fibroblast .c 2843 to 3225 388 to 6       383/388
(98 %)
0 diff
(100 %id)
T47820 fetal spleen, Spleen .c 2844 to 3159 1 to 329       329/340
(96 %)
17 diff
(95.0 %id)
BQ308538 breast .c 2847 to 2977 133 to 4       130/133
(97 %)
0 diff
(100 %id)
AA808467 germinal center B cell .c 2856 to 3222 377 to 11   AAA   367/367
(100 %)
1 diff
(99.8 %id)
AW050796 colon, colonic mucosa from 3 patients with Crohn'sdisease .c 2856 to 3225 372 to 1       372/372
(100 %)
6 diff
(98.4 %id)
AW192356 adenocarcinoma, Pancreas .c 2858 to 3221 367 to 4       364/367
(99 %)
0 diff
(100 %id)
AA868007 pooled .c 2861 to 3223 375 to 13   AAA   363/363
(100 %)
0 diff
(100 %id)
EC489886 Prostate .c 2863 to 2969 103 to 1       103/103
(100 %)
4 diff
(96.2 %id)
EC475328 Prostate .c 2864 to 2969 106 to 1       106/106
(100 %)
1 diff
(99.1 %id)
AA553758 colon, tumor .c 2882 to 3223 342 to 1       342/342
(100 %)
0 diff
(100 %id)
AA854986   .c 2890 to 3225 338 to 3       336/338
(99 %)
0 diff
(100 %id)
AI912397 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 2896 to 3222 326 to 1       326/326
(100 %)
1 diff
(99.7 %id)
AW117749 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 2903 to 3225 328 to 5       324/328
(98 %)
0 diff
(100 %id)
BU753117 placenta .c 2906 to 3223 335 to 18   AAA   318/320
(99 %)
1 diff
(99.7 %id)
AA653386   .c 2919 to 3223 305 to 1       305/305
(100 %)
0 diff
(100 %id)
AW438592 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 2920 to 3223 304 to 1       304/304
(100 %)
0 diff
(100 %id)
AW977875   .c 2925 to 3221 297 to 1     Submitted on the opposite strand 297/429
(69 %)
1 diff
(99.8 %id)
BU752645 placenta .c 2927 to 3223 314 to 18   AAA   297/297
(100 %)
0 diff
(100 %id)
DN920039   .c 2929 to 3223 296 to 2       295/296
(99 %)
0 diff
(100 %id)
BM986978 mixed .c 2933 to 3223 309 to 19   AAA   291/291
(100 %)
0 diff
(100 %id)
AI648701 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 2951 to 3225 276 to 2       275/276
(99 %)
0 diff
(100 %id)
T77889 liver and spleen .c 2953 to 3222 273 to 1   fully sequenced,   273/273
(100 %)
0 diff
(100 %id)
AI277285 placenta .c 2953 to 3221 291 to 23   AAA   269/269
(100 %)
5 diff
(98.2 %id)
CN484757 eye .c 2959 to 3056 1 to 97       97/97
(100 %)
1 diff
(99.0 %id)
AL120761 melanoma (MeWo cell line) .c 3005 to 3223 1 to 219   AAA   219/219
(100 %)
0 diff
(100 %id)
GD143563   .c 3101 to 3222 1 to 122   AAA   122/122
(100 %)
4 diff
(96.8 %id)
EH339695   .c 3140 to 3217 1 to 78       78/78
(100 %)
0 diff
(100 %id)
AK301475 synovial membrane tissue from rheumatoidarthritis .d 1 to 1506 1 to 1506 A267V tiling clone,   1506/1506
(100 %)
1 diff
(100.0 %id)
DC296142 synovial membrane tissue from rheumatioidarthritis .d 1 to 545 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
AK311133 cerebellum .e 1 to 888 7 to 894 exact tiling clone,   894/894
(100 %)
0 diff
(100 %id)
DA122458 cerebellum .e 1 to 554 7 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA535795 heart .f 1 to 548 7 to 554 D82G tiling clone, capped   553/563
(98 %)
2 diff
(99.7 %id)
DB081346 testis .g 1 to 400 16 to 415 exact tiling clone, capped Suspected internal deletion 400/465
(86 %)
8 diff
(98.3 %id)
DB458448 testis .h 1 to 407 7 to 414 A78P R80T tiling clone,   414/474
(87 %)
5 diff
(99.0 %id)
T94202 lung .i-u 1 to 340 1 to 348 exact tiling clone,   348/413
(84 %)
13 diff
(96.9 %id)
H58278 liver and spleen .i-u 110 to 471 1 to 371   tiling clone, fully sequenced,   371/371
(100 %)
7 diff
(98.2 %id)
AI052572 liver and spleen .i-u 254 to 862 629 to 1   tiling clone,   629/629
(100 %)
12 diff
(98.1 %id)
BI020402 marrow .i-u 344 to 742 1 to 399   tiling clone,   399/399
(100 %)
2 diff
(99.5 %id)
H58671 liver and spleen .i-u 441 to 855 415 to 1   fully sequenced,   415/415
(100 %)
4 diff
(99.1 %id)
T94113 lung .i-u 545 to 852 312 to 1       312/481
(64 %)
2 diff
(99.6 %id)
AL698676 human skeletal muscle .j 1 to 647 1 to 648 exact tiling clone,   648/648
(100 %)
3 diff
(99.6 %id)
DB099041 testis .k 1 to 591 2 to 592 exact tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
DA100247 cerebellum .l 1 to 543 2 to 544   tiling clone, capped   543/544
(99 %)
1 diff
(99.9 %id)
AA776678 schizophrenic brain S-11 frontal lobe .m 1 to 256 1 to 256 C5* tiling clone, Submitted on the opposite strand 256/256
(100 %)
2 diff
(99.3 %id)
AV708742 adrenal gland Gene CCDC109A, variant not shown         Suspected internal deletion, this clone was ignored    
AK310455 testis Gene CCDC109A, variant not shown         Suspected internal deletion, this clone was ignored    
DA477137   Gene CCDC109A, variant not shown       capped This clone was ignored    
BX954500   Gene CCDC109A, variant not shown              
BX950995   Gene CCDC109A, variant not shown         This clone was ignored    
DB317671 brain Gene CCDC109A, variant not shown              
DA530600 brain Gene CCDC109A, variant not shown       capped      
DB459790 testis Gene CCDC109A, variant not shown         This clone was ignored    
TI_1948122734   Gene CCDC109A, variant not shown         This clone was ignored    
TI_1948122735   Gene CCDC109A, variant not shown         This clone was ignored    
TI_1948122874   Gene CCDC109A, variant not shown         This clone was ignored    
DB224192 trachea Gene CCDC109A, variant not shown       capped This clone was ignored    
DB349586 trachea Gene CCDC109A, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k, .l, .m Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C