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Gene B4GALNT4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
103 supporting clones for gene B4GALNT4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BU193186 eye, retinoblastoma .a 1 to 725 21 to 745       725/903
(80 %)
12 diff
(98.7 %id)
BF058197 fibrotheoma, ovary .a 12 to 554 1 to 543   tiling clone, Submitted on the opposite strand 543/543
(100 %)
2 diff
(99.7 %id)
NM_178537.4   .a 12 to 3464 1 to 3453   RefSeq, AAA   3453/3453
(100 %)
0 diff
(100 %id)
BF512600   .a 13 to 424 1 to 413     Submitted on the opposite strand 413/414
(99 %)
32 diff
(92.3 %id)
BF513804   .a 13 to 483 1 to 471     Submitted on the opposite strand 471/471
(100 %)
2 diff
(99.6 %id)
AB089939   .a 21 to 3140 1 to 3120   tiling clone,   3120/3120
(100 %)
0 diff
(100 %id)
BF115668 fibrotheoma, ovary .a 30 to 531 1 to 502     Submitted on the opposite strand 502/502
(100 %)
2 diff
(99.7 %id)
BQ882963 brain, neuroblastoma, cell line .a 53 to 723 1 to 676       676/971
(69 %)
8 diff
(99.2 %id)
CN390859 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 58 to 415 1 to 358       358/358
(100 %)
3 diff
(99.2 %id)
TI_57244458   .a 376 to 1162 30 to 850       662/850
(77 %)
31 diff
(96.4 %id)
BI915328 brain .a 381 to 1162 1 to 816       657/816
(80 %)
25 diff
(97.0 %id)
BQ362077 ovary .a 415 to 632 1 to 221       221/221
(100 %)
8 diff
(96.4 %id)
AI902610 breast .a 551 to 839 1 to 289       289/289
(100 %)
4 diff
(98.7 %id)
TI_57200282   .a 649 to 1381 89 to 821       733/822
(89 %)
6 diff
(99.3 %id)
BI822361 pooled brain, lung, testis .a 656 to 1381 1 to 726       726/727
(99 %)
1 diff
(99.9 %id)
CX871225 embryonic stem .a 761 to 1573 1 to 813       813/813
(100 %)
2 diff
(99.8 %id)
CX868953 embryonic stem .a 766 to 1587 1 to 822   fully sequenced,   822/822
(100 %)
0 diff
(100 %id)
CD579807 brain .a 879 to 1257 1 to 380       378/385
(98 %)
0 diff
(100 %id)
CN282050 embryonic stem cells, cell lines H1, H7, andH9 .a 930 to 1243 1 to 316       316/316
(100 %)
2 diff
(99.4 %id)
BG251941 adenocarcinoma, cell line, Liver .a 1014 to 1402 1 to 386       388/426
(91 %)
5 diff
(98.9 %id)
CX868878 embryonic stem .a 1557 to 2320 764 to 1   fully sequenced,   764/764
(100 %)
0 diff
(100 %id)
BF195052 fibrotheoma, ovary .a 1769 to 2330 561 to 1       562/561
(100 %)
4 diff
(99.3 %id)
AI870328 anaplastic oligodendroglioma, brain .a 1816 to 2330 515 to 1       515/515
(100 %)
0 diff
(100 %id)
AI825817 colon, colon tumor, RER+ .a 1827 to 2330 504 to 1       504/504
(100 %)
1 diff
(99.9 %id)
BF059094 fibrotheoma, ovary .a 1828 to 2330 503 to 1       503/503
(100 %)
0 diff
(100 %id)
AW298038   .a 1883 to 2225 345 to 3       343/352
(97 %)
0 diff
(100 %id)
AI051625 brain, glioblastoma (pooled) .a 1930 to 2330 401 to 1       401/401
(100 %)
0 diff
(100 %id)
BM908604 astrocytoma grade IV, cell line, brain .a 1967 to 2286 1 to 321       321/1443
(22 %)
8 diff
(99.5 %id)
TI_151728723   .a 1967 to 2334 400 to 33       368/777
(47 %)
0 diff
(100 %id)
TI_151729191   .a 1967 to 2324 432 to 72       361/1025
(35 %)
0 diff
(100 %id)
BM723288 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1969 to 2322 1 to 354       354/354
(100 %)
1 diff
(99.8 %id)
BM724766 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1969 to 2322 1 to 354       354/354
(100 %)
0 diff
(100 %id)
BQ686271 ductal carcinoma, cell line, Pancreas .a 2004 to 2348 1 to 345       345/1018
(33 %)
7 diff
(99.4 %id)
AI568514 anaplastic oligodendroglioma, brain .a 2011 to 2289 279 to 1       279/279
(100 %)
1 diff
(99.7 %id)
BG056807 anaplastic oligodendroglioma, brain .a 2020 to 2320 301 to 1       301/301
(100 %)
1 diff
(99.7 %id)
AI141997 pooled .a 2023 to 2330 308 to 1       308/308
(100 %)
1 diff
(99.7 %id)
AI216466 pooled .a 2123 to 2330 208 to 1       208/208
(100 %)
0 diff
(100 %id)
AK057774 cerebellum .a 2137 to 3464 1 to 1328   available from FLJ,   1328/1328
(100 %)
3 diff
(99.8 %id)
AA398502 ovarian tumor, ovary .a 2235 to 2330 96 to 1       96/96
(100 %)
2 diff
(98.0 %id)
BE795939 lung, small cell carcinoma .a 2306 to 3043 1 to 732       732/734
(99 %)
11 diff
(98.6 %id)
AA722991 heart .a 2322 to 2711 1 to 390     Submitted on the opposite strand 390/390
(100 %)
8 diff
(98.0 %id)
AI830860 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 2323 to 2827 1 to 505     Submitted on the opposite strand 505/505
(100 %)
1 diff
(99.9 %id)
AI951576 fibrotheoma, ovary .a 2323 to 2593 1 to 271     Submitted on the opposite strand 271/271
(100 %)
2 diff
(99.3 %id)
BF512074   .a 2324 to 2794 1 to 471     Submitted on the opposite strand 471/471
(100 %)
2 diff
(99.6 %id)
BF194701 fibrotheoma, ovary .a 2324 to 2820 1 to 497     Submitted on the opposite strand 497/497
(100 %)
14 diff
(97.2 %id)
AI814432 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 2341 to 2904 1 to 564     Submitted on the opposite strand 564/564
(100 %)
3 diff
(99.5 %id)
AI869209 anaplastic oligodendroglioma, brain .a 2341 to 2712 1 to 372     Submitted on the opposite strand 372/372
(100 %)
2 diff
(99.5 %id)
AI810052 pooled .a 2346 to 2799 1 to 455     Submitted on the opposite strand 455/455
(100 %)
13 diff
(97.2 %id)
AI276827 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2351 to 2621 1 to 271     Submitted on the opposite strand 271/271
(100 %)
0 diff
(100 %id)
AI378310 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2352 to 2793 1 to 442     Submitted on the opposite strand 442/442
(100 %)
0 diff
(100 %id)
AI951535 fibrotheoma, ovary .a 2354 to 2831 1 to 480     Submitted on the opposite strand 480/480
(100 %)
9 diff
(98.2 %id)
BQ646410 hepatocellular carcinoma, cell line, Liver .a 2455 to 3234 18 to 803       786/939
(83 %)
35 diff
(96.3 %id)
AI287702 ovary, tumor, 5 pooled (see description) .a 2497 to 2698 1 to 202     Submitted on the opposite strand 202/202
(100 %)
0 diff
(100 %id)
TI_149293311   .a 2501 to 3462 1030 to 78   AAA   953/1005
(94 %)
16 diff
(98.5 %id)
CN348076 embryonic stem cells, DMSO-treated H9 cellline .a 2530 to 2794 1 to 268       268/268
(100 %)
3 diff
(98.9 %id)
BM686782 eye, optic nerve .a 2681 to 3104 4 to 426   fully sequenced,   423/426
(99 %)
2 diff
(99.6 %id)
CX865258 embryonic stem .a 2711 to 3464 779 to 26   AAA Submitted on the opposite strand 754/754
(100 %)
4 diff
(99.5 %id)
BM975059 lung .a 2779 to 3462 702 to 19   AAA   684/684
(100 %)
0 diff
(100 %id)
BF342486 brain, glioblastoma with EGFR amplification .a 2791 to 3464 13 to 685   AAA   673/685
(98 %)
11 diff
(98.4 %id)
BQ219965 epithelioid carcinoma, Pancreas .a 2897 to 3464 623 to 51   AAA Submitted on the opposite strand 573/936
(61 %)
69 diff
(92.7 %id)
BM931362 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2955 to 3395 1 to 441       441/441
(100 %)
0 diff
(100 %id)
BF526541 brain, glioblastoma with EGFR amplification .a 2958 to 3464 1 to 511   AAA   511/511
(100 %)
10 diff
(98.1 %id)
BF526458 brain, glioblastoma with EGFR amplification .a 2959 to 3419 1 to 469       469/614
(76 %)
11 diff
(98.3 %id)
BY795609 eye .a 3011 to 3432 422 to 1     Submitted on the opposite strand 422/422
(100 %)
1 diff
(99.8 %id)
CN348077 embryonic stem cells, cell lines H1, H7, andH9 .a 3029 to 3464 1 to 436   tiling clone, AAA   436/436
(100 %)
7 diff
(98.4 %id)
BM672962 eye, optic nerve .a 3074 to 3464 409 to 19   fully sequenced, AAA   391/391
(100 %)
0 diff
(100 %id)
EC558745 Prostate .a 3087 to 3191 1 to 103       103/103
(100 %)
2 diff
(98.1 %id)
CB409387 maxilla, pooled .a 3091 to 3355 1 to 265       265/334
(79 %)
3 diff
(99.2 %id)
DW413392 Liver .a 3133 to 3404 9 to 280   AAA   272/280
(97 %)
6 diff
(97.9 %id)
DW431388 Liver .a 3133 to 3390 9 to 269       261/269
(97 %)
6 diff
(97.8 %id)
AW166819 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 3137 to 3464 345 to 18   AAA   328/328
(100 %)
4 diff
(98.8 %id)
AA933730 pooled germ cell tumors .a 3312 to 3465 159 to 6   tiling clone,   154/159
(96 %)
0 diff
(100 %id)
CN276929 embryonic stem cells, DMSO-treated H9 cellline .a 3357 to 3465 1 to 109       109/124
(87 %)
1 diff
(99.2 %id)
CX866445 embryonic stem .b 1 to 631 1 to 630   tiling clone,   630/630
(100 %)
2 diff
(99.7 %id)
BC035906 Brain, fetal, whole pooled .b 751 to 3237 1 to 2487   tiling clone, available from MGC,   2487/2487
(100 %)
8 diff
(99.7 %id)
CX866358 embryonic stem .b 2532 to 3237 706 to 1   tiling clone,   706/706
(100 %)
1 diff
(99.9 %id)
TI_154003820   .b 2704 to 3251 606 to 59       548/627
(87 %)
0 diff
(100 %id)
AW055296 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 2762 to 3206 446 to 1       446/446
(100 %)
3 diff
(99.4 %id)
AW297264   .b 2806 to 3246 441 to 1   tiling clone,   441/441
(100 %)
1 diff
(99.8 %id)
DA249963 brain .c 1 to 582 2 to 587   tiling clone, to resequence, capped   586/586
(100 %)
4 diff
(99.4 %id)
BI918119 brain .c 50 to 424 1 to 388   tiling clone, available from MGC,   388/388
(100 %)
16 diff
(95.9 %id)
DB306300 brain .c 1289 to 1795 507 to 1   tiling clone, to resequence,   507/507
(100 %)
1 diff
(99.9 %id)
CN390860 embryonic stem cells, cell lines H1, H7, andH9 .d 1 to 540 1 to 541   tiling clone,   541/541
(100 %)
1 diff
(99.9 %id)
AI581342 lung .d 305 to 732 428 to 1   tiling clone,   428/428
(100 %)
1 diff
(99.8 %id)
BU538156 adenocarcinoma, cell line, breast .e 1 to 876 2 to 884 S53L S100L E102G R103E Q104A ... tiling clone,   884/957
(92 %)
23 diff
(97.6 %id)
BF516157   .f 1 to 409 1 to 409 A67V G97X tiling clone, Submitted on the opposite strand 409/409
(100 %)
2 diff
(99.6 %id)
BX115728 multiple sclerosis lesions .g 1 to 427 1 to 427 T2S W3G tiling clone,   427/427
(100 %)
4 diff
(99.1 %id)
N48738 multiple sclerosis lesions .g 53 to 502 1 to 455   tiling clone, fully sequenced,   455/455
(100 %)
13 diff
(97.2 %id)
N56877 multiple sclerosis lesions .g 472 to 872 400 to 1   tiling clone, fully sequenced,   400/400
(100 %)
6 diff
(98.5 %id)
BM843019 lymph node, stomach Gene B4GALNT4, variant not shown              
BM842253 lymph node, stomach Gene B4GALNT4, variant not shown              
BM845019 lymph node, stomach Gene B4GALNT4, variant not shown              
BE066348 breast Gene B4GALNT4, variant not shown              
BF923929 nervous_tumor Gene B4GALNT4, variant not shown              
BF943800 nervous_normal Gene B4GALNT4, variant not shown         Submitted on the opposite strand    
CN370661 embryonic stem cells, cell lines H1, H7, andH9 Gene B4GALNT4, variant not shown              
CN370662 embryonic stem cells, cell lines H1, H7, andH9 Gene B4GALNT4, variant not shown              
BI047238 prostate_tumor Gene B4GALNT4, variant not shown              
BI047239 prostate_tumor Gene B4GALNT4, variant not shown              
BI047267 prostate_tumor Gene B4GALNT4, variant not shown              
AA326392 brain, cerebellum Gene B4GALNT4, variant not shown              
BG913587 anaplastic oligodendroglioma with 1p/19qloss, brain Gene B4GALNT4, variant not shown              
BI754586 brain Gene B4GALNT4, variant not shown         Suspected internal deletion, this clone was ignored    
BQ896854 dorsal root ganglia Gene B4GALNT4, variant not shown              
CX872668 embryonic stem Gene B4GALNT4, variant not shown              
CX865500 embryonic stem Gene B4GALNT4, variant not shown              
BC131528 PCR rescued clones Gene B4GALNT4, variant not shown         Suspected internal deletion, this clone was ignored    
TI_57243251   Gene B4GALNT4, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C