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Gene BTBD9TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
110 supporting clones for gene BTBD9 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001099272.1   .a 1 to 8748 1 to 8748 exact RefSeq, AAA   8748/8748
(100 %)
0 diff
(100 %id)
CN344573 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 225 to 975 1 to 751   tiling clone,   751/751
(100 %)
1 diff
(99.9 %id)
DA404403 thalamus .a 254 to 844 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
BP311629 brain .a 254 to 836 1 to 582       582/582
(100 %)
12 diff
(98.0 %id)
DA052023   .a 266 to 774 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
AL712082 human skeletal muscle .a 268 to 906 1 to 639       639/639
(100 %)
0 diff
(100 %id)
DB095147 testis .a 349 to 900 39 to 590   capped   552/589
(93 %)
11 diff
(98.2 %id)
DA622831 Kidney .a 353 to 947 2 to 596   capped   595/596
(99 %)
2 diff
(99.7 %id)
CN344572 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 490 to 1290 1 to 802       802/802
(100 %)
3 diff
(99.7 %id)
BP251773 hippocampus .a 796 to 1412 1 to 618   tiling clone,   618/624
(99 %)
2 diff
(99.7 %id)
AK090930 amygdala .a 1297 to 3270 1 to 1974   tiling clone, available from FLJ,   1974/2131
(92 %)
7 diff
(99.7 %id)
AX746689   .a 1297 to 3270 1 to 1974       1974/2131
(92 %)
7 diff
(99.7 %id)
DA156767 amygdala .a 1298 to 1842 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
BE077198 breast .a 1410 to 1821 64 to 475       412/477
(86 %)
12 diff
(97.5 %id)
BX279596 pooled .a 1817 to 2306 1 to 490       490/490
(100 %)
0 diff
(100 %id)
AW663945 pooled .a 1833 to 2045 214 to 1       214/229
(93 %)
9 diff
(96.1 %id)
AL710366 human skeletal muscle .a 1904 to 2149 1 to 246       246/246
(100 %)
1 diff
(99.6 %id)
CR616810 Placenta Cot 25-normalized .a 1953 to 2677 1 to 725       725/725
(100 %)
0 diff
(100 %id)
BX377450 Placenta Cot 25-normalized .a 1953 to 2627 689 to 14       676/689
(98 %)
0 diff
(100 %id)
BX377451 Placenta Cot 25-normalized .a 1953 to 2677 1 to 726       726/726
(100 %)
1 diff
(99.9 %id)
BX369858 Placenta Cot 25-normalized .a 2547 to 2677 1 to 129       129/134
(96 %)
3 diff
(97.8 %id)
DB149397 thymus .a 2804 to 3362 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB301956 amygdala .a 2885 to 3270 543 to 158       386/543
(71 %)
0 diff
(100 %id)
BX476497   .a 3162 to 3635 17 to 490   tiling clone,   474/490
(96 %)
6 diff
(98.8 %id)
BI013701 lung_tumor .a 3331 to 3625 299 to 4       296/309
(95 %)
0 diff
(100 %id)
N53643 multiple sclerosis lesions .a 3723 to 3831 1 to 109   tiling clone,   109/109
(100 %)
0 diff
(100 %id)
BE176181 head_neck .a 3888 to 4212 325 to 2   tiling clone, Submitted on the opposite strand 324/335
(96 %)
0 diff
(100 %id)
BF352290 head_neck .a 3888 to 4202 315 to 2   tiling clone,   314/325
(96 %)
0 diff
(100 %id)
BQ066330 lymph, lymphoma, cell line .a 4244 to 5007 1 to 776   tiling clone,   776/1043
(74 %)
23 diff
(97.8 %id)
CF137725 lymph .a 4748 to 5043 1 to 296   tiling clone,   296/296
(100 %)
8 diff
(97.3 %id)
M78469   .a 4924 to 5297 376 to 1   tiling clone,   376/376
(100 %)
6 diff
(98.5 %id)
BP425831 small intestine .a 5115 to 5338 1 to 226   tiling clone, Submitted on the opposite strand 226/229
(98 %)
3 diff
(98.7 %id)
AI266253 borderline ovarian carcinoma, ovary .a 5313 to 5561 1 to 254   tiling clone, AAA Submitted on the opposite strand 254/254
(100 %)
12 diff
(95.3 %id)
H67071 nose, olfactory epithelium .a 5346 to 5592 1 to 247   tiling clone,   247/250
(98 %)
3 diff
(98.8 %id)
FN120986 breast carcinoma .a 5352 to 5407 55 to 1   tiling clone, Submitted on the opposite strand 55/55
(100 %)
1 diff
(98.2 %id)
BX114302 carcinoid, lung .a 5598 to 6219 1 to 622       622/622
(100 %)
4 diff
(99.4 %id)
AI791243 carcinoid, lung .a 5598 to 6033 1 to 436   tiling clone,   436/436
(100 %)
4 diff
(99.1 %id)
DA408022 thalamus .a 5659 to 6196 2 to 539   capped   538/538
(100 %)
2 diff
(99.7 %id)
AI984662 Kidney .a 5668 to 5871 204 to 1       204/204
(100 %)
0 diff
(100 %id)
DA804697 brain .a 5683 to 6242 2 to 561   capped   560/564
(99 %)
1 diff
(99.9 %id)
AI732925 carcinoid, lung .a 5709 to 6221 525 to 13   AAA   513/513
(100 %)
0 diff
(100 %id)
BF681515 Prostate .a 5720 to 6232 1 to 516   AAA   516/516
(100 %)
9 diff
(98.3 %id)
AI650360 Kidney .a 5754 to 6235 497 to 16   AAA   482/482
(100 %)
2 diff
(99.6 %id)
AA894437 carcinoid, lung .a 5854 to 6221 380 to 13   AAA   368/368
(100 %)
2 diff
(99.5 %id)
AK126242 kidney, tumor tissue .a 5926 to 8748 1 to 2828   tiling clone, available from FLJ,   2828/2828
(100 %)
5 diff
(99.9 %id)
DB173928 kidney, tumor tissue .a 5927 to 6471 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA510391 brain .a 6101 to 6669 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA342941 substantia nigra .a 6199 to 6694 2 to 497   capped   496/496
(100 %)
2 diff
(99.6 %id)
DA498095 brain .a 6205 to 6737 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA155010 amygdala .a 6341 to 6875 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
CB155203 brain .a 6499 to 6689 1 to 191       191/191
(100 %)
1 diff
(99.5 %id)
CB155212 brain .a 6499 to 7067 1 to 569       569/569
(100 %)
0 diff
(100 %id)
DA083687 cerebellum .a 6500 to 7072 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA199789 brain .a 6538 to 7120 2 to 585   capped   584/584
(100 %)
3 diff
(99.5 %id)
AL157476 amygdala .a 6611 to 8748 1 to 2143   available from DKFZ, AAA   2143/2143
(100 %)
5 diff
(99.8 %id)
BM702303 eye, optic nerve .a 6753 to 7391 1 to 640       640/658
(97 %)
3 diff
(99.6 %id)
CR596814 fetal brain .a 6755 to 8557 1 to 1803   tiling clone,   1803/1803
(100 %)
0 diff
(100 %id)
AL538349 brain, fetal brain .a 6755 to 7737 1 to 982       982/985
(99 %)
9 diff
(99.1 %id)
TI_151699998   .a 6755 to 7390 701 to 69       633/963
(65 %)
0 diff
(100 %id)
CB161778 Liver .a 6857 to 7385 1 to 528       528/528
(100 %)
1 diff
(99.9 %id)
BI024981 marrow .a 6970 to 7173 206 to 7       200/216
(92 %)
0 diff
(100 %id)
BX109492 brain .a 7015 to 7434 1 to 421       421/422
(99 %)
3 diff
(99.3 %id)
BC035667 Brain, hippocampus .a 7033 to 8748 1 to 1720   available from MGC, AAA   1720/1720
(100 %)
6 diff
(99.7 %id)
BM805396 brain, hippocampus .a 7034 to 7445 18 to 427   available from MGC,   410/431
(95 %)
5 diff
(98.9 %id)
H39127 brain .a 7088 to 7430 1 to 344       344/345
(99 %)
5 diff
(98.6 %id)
BQ707777 Spleen .a 7457 to 8306 1 to 855       855/930
(91 %)
20 diff
(97.9 %id)
BX451662 brain, fetal brain .a 7643 to 8557 1 to 916       916/919
(99 %)
14 diff
(98.5 %id)
AL567269 brain, fetal brain .a 7690 to 8716 1028 to 5       1024/1028
(99 %)
0 diff
(100 %id)
TI_149300760   .a 7884 to 8748 938 to 79   AAA   860/992
(86 %)
21 diff
(97.9 %id)
BM976766 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 8031 to 8748 736 to 19   AAA   718/718
(100 %)
6 diff
(99.2 %id)
CB243360 Human Lung Epithelial cells, lung .a 8086 to 8748 683 to 19   AAA   665/667
(99 %)
7 diff
(99.0 %id)
CA426362 cell lines, Chondrosarcoma .a 8121 to 8748 644 to 19   AAA   626/626
(100 %)
2 diff
(99.7 %id)
D81010.
matches multiple genes
brain .a 8158 to 8525 1 to 367     also hits gene C14orf119 367/369
(99 %)
7 diff
(98.2 %id)
N98799 multiple sclerosis lesions .a 8198 to 8749 1 to 554       554/562
(98 %)
17 diff
(97.0 %id)
AW182836 pooled .a 8268 to 8749 485 to 3       483/485
(99 %)
0 diff
(100 %id)
AI824328 carcinoid, lung .a 8339 to 8749 411 to 1   tiling clone,   411/411
(100 %)
0 diff
(100 %id)
H39093 brain .a 8343 to 8742 411 to 10       402/414
(97 %)
0 diff
(100 %id)
BF448936 sympathetic trunk .a 8406 to 8749 345 to 2       344/345
(99 %)
0 diff
(100 %id)
AI220033 pooled .a 8425 to 8747 323 to 1       323/323
(100 %)
1 diff
(99.7 %id)
AI474779 Kidney .a 8425 to 8749 325 to 1       325/325
(100 %)
0 diff
(100 %id)
AI197834 anaplastic oligodendroglioma, brain .a 8491 to 8748 279 to 22   AAA   258/258
(100 %)
1 diff
(99.7 %id)
AI700921 Kidney .a 8491 to 8748 272 to 15   AAA   258/258
(100 %)
0 diff
(100 %id)
BM987784 mixed .a 8527 to 8755 245 to 17       229/247
(92 %)
0 diff
(100 %id)
BM773375 stomach .a 8649 to 8748 1 to 100   AAA   100/100
(100 %)
0 diff
(100 %id)
NM_052893.1   .b 1 to 8948 1 to 8948 exact RefSeq, AAA   8948/8948
(100 %)
0 diff
(100 %id)
DA391209 thalamus .b 282 to 853 2 to 573   tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DB311804 thalamus .b 3362 to 3903 543 to 1   tiling clone,   543/543
(100 %)
2 diff
(99.7 %id)
NM_001172418.1   .c 1 to 8619 2 to 8620 exact RefSeq, AAA   8620/8620
(100 %)
0 diff
(100 %id)
BC101357 PCR rescued clones .c 79 to 2112 1 to 2034 exact tiling clone,   2034/2034
(100 %)
0 diff
(100 %id)
AK057507 testis .d 1 to 1979 2 to 1980 I263V tiling clone, available from FLJ,   1980/1980
(100 %)
1 diff
(100.0 %id)
NM_152733.2   .d 1 to 8484 2 to 8485 exact RefSeq, AAA   8485/8485
(100 %)
0 diff
(100 %id)
BC101354 PCR rescued clones .d 79 to 1977 1 to 1899 exact tiling clone,   1899/1899
(100 %)
0 diff
(100 %id)
BC101355 PCR rescued clones .d 79 to 1977 1 to 1899 exact     1899/1899
(100 %)
0 diff
(100 %id)
DB025866 testis .e 1 to 613 2 to 614   tiling clone, capped   613/613
(100 %)
0 diff
(100 %id)
BC101356 PCR rescued clones .e 79 to 2046 1 to 1968 exact tiling clone,   1968/1968
(100 %)
0 diff
(100 %id)
DB336532 testis .e 1461 to 2048 588 to 1   tiling clone,   588/588
(100 %)
1 diff
(99.9 %id)
CD699465 normal nasopharynx .f 1 to 416 19 to 434 C2G R87G tiling clone,   416/434
(95 %)
11 diff
(97.5 %id)
DB095510 testis .g 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
2 diff
(99.7 %id)
U23842 brain, frontal cortex Gene BTBD9, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AB067467 brain Gene BTBD9, variant not shown       available from KIAA, Suspected internal deletion, suspected internal deletion, suspected internal deletion, this clone was ignored    
T23787   Gene BTBD9, variant not shown         This clone was ignored    
BF985705 placenta_normal Gene BTBD9, variant not shown         This clone was ignored    
DB312037 thalamus Gene BTBD9, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
DA398540 thalamus Gene BTBD9, variant not shown       capped Suspected internal deletion, suspected internal deletion, this clone was ignored    
BX537534 human retina Gene BTBD9, variant not shown       available from DKFZ, AAA Suspected internal deletion, suspected internal deletion, this clone was ignored    
CN344571 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells Gene BTBD9, variant not shown         This clone was ignored    
BX353574 Neuroblastoma Cot 25-normalized Gene BTBD9, variant not shown         This clone was ignored    
BX439447 placenta Gene BTBD9, variant not shown         This clone was ignored    
BQ637641 eye, retina Gene BTBD9, variant not shown         This clone was ignored    
T03771   Gene BTBD9, variant not shown         This clone was ignored    
R51013 whole brain Gene BTBD9, variant not shown         This clone was ignored    
R51121 whole brain Gene BTBD9, variant not shown         This clone was ignored    
R51295 whole brain Gene BTBD9, variant not shown         This clone was ignored    
R51406 whole brain Gene BTBD9, variant not shown         This clone was ignored    
AA486863 lung Gene BTBD9, variant not shown       fully sequenced, This clone was ignored    
AA486864 lung Gene BTBD9, variant not shown       fully sequenced, AAA This clone was ignored    
BQ001356 lung, Metastatic Chondrosarcoma Gene BTBD9, variant not shown       AAA Submitted on the opposite strand    
CA313423 Human Lung Epithelial cells, lung Gene BTBD9, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI