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Gene BTAF1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
334 supporting clones for gene BTAF1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA501164 brain .a 1 to 317 2 to 318   capped   317/330
(96 %)
3 diff
(99.1 %id)
DA900890   .a 1 to 853 2 to 854   tiling clone, capped   853/853
(100 %)
10 diff
(98.9 %id)
DN990355 brain, whole brain .a 10 to 694 42 to 726       685/726
(94 %)
6 diff
(99.2 %id)
DB241241 trachea .a 17 to 560 2 to 545   capped   544/548
(99 %)
5 diff
(99.1 %id)
DA306592 hippocampus .a 21 to 590 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BJ997181 hepatoblastoma .a 21 to 531 1 to 511       511/511
(100 %)
0 diff
(100 %id)
DA043742 bladder .a 22 to 589 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA243588 brain .a 22 to 598 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA384528 thalamus .a 22 to 585 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA424795   .a 22 to 582 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AU133179   .a 22 to 797 2 to 778   capped   777/781
(99 %)
5 diff
(99.4 %id)
DA778196 brain .a 22 to 594 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA926352 small intestine .a 22 to 605 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA954857 Spleen .a 22 to 589 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB084297 testis .a 22 to 348 2 to 328   capped   327/327
(100 %)
0 diff
(100 %id)
DB087764 testis .a 22 to 517 2 to 497   capped   496/496
(100 %)
2 diff
(99.6 %id)
DB141305 thymus .a 22 to 568 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
DB143730 thymus .a 22 to 552 2 to 532   capped   531/531
(100 %)
1 diff
(99.9 %id)
DB146839 thymus .a 22 to 585 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB158932 thymus .a 22 to 570 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DB066609 testis .a 23 to 498 2 to 477   capped   476/477
(99 %)
3 diff
(99.4 %id)
DB077026 testis .a 24 to 573 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA417416 thalamus .a 25 to 577 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA500641 brain .a 25 to 596 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA643684   .a 25 to 568 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA779958 brain .a 25 to 584 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB142724 thymus .a 25 to 581 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA580820   .a 27 to 567 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA277163 corpus callosum .a 29 to 605 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
CN294288 embryonic stem cells, DMSO-treated H9 cellline .a 36 to 243 1 to 208       208/208
(100 %)
4 diff
(98.1 %id)
CN314112 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 45 to 627 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA291430 hippocampus .a 48 to 635 2 to 589   capped   588/590
(99 %)
1 diff
(99.9 %id)
CN314114 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 57 to 690 1 to 635       635/635
(100 %)
1 diff
(99.9 %id)
DB132127 thymus .a 59 to 612 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
CR983430 T-Lymphocytes .a 128 to 719 1 to 592       592/594
(99 %)
0 diff
(100 %id)
AF038362   .a 205 to 6531 20 to 6345 exact tiling clone,   6326/6345
(99 %)
8 diff
(99.9 %id)
NM_003972.2   .a 205 to 7240 1 to 7036 exact RefSeq, AAA   7036/7036
(100 %)
0 diff
(100 %id)
TI_1242416258   .a 217 to 1292 80 to 1152       1071/1264
(84 %)
18 diff
(98.6 %id)
TI_1242418554   .a 217 to 978 88 to 847       760/847
(89 %)
9 diff
(99.0 %id)
BC112201 Cerebellum, Lung, PCR rescued clones .a 221 to 5904 1 to 5684 exact     5684/5684
(100 %)
1 diff
(100.0 %id)
AJ001017   .a 291 to 7240 1 to 6949 exact AAA   6949/6949
(100 %)
3 diff
(100.0 %id)
TI_1242416622   .a 702 to 1926 7 to 1227       1225/1277
(95 %)
31 diff
(97.6 %id)
TI_1242416640   .a 734 to 1907 6 to 1171       1162/1277
(90 %)
21 diff
(98.4 %id)
TI_1242416628   .a 824 to 1949 1 to 1130       1130/1277
(88 %)
14 diff
(99.0 %id)
TI_1242416650   .a 985 to 2199 16 to 1225       1210/1289
(93 %)
41 diff
(96.9 %id)
DA557555   .a 1063 to 1218 2 to 157   capped   156/156
(100 %)
0 diff
(100 %id)
CU444719 epidermis .a 1451 to 2168 724 to 8     Submitted on the opposite strand 717/724
(99 %)
0 diff
(100 %id)
CN314117 embryonic stem cells, cell lines H1, H7, andH9 .a 1469 to 1990 1 to 522       522/522
(100 %)
4 diff
(99.3 %id)
BG117615 adenocarcinoma, cell line, Liver .a 1707 to 2453 9 to 737   available from MGC,   729/852
(85 %)
29 diff
(96.6 %id)
BC047009 Liver, adenocarcinoma .a 1713 to 2971 1 to 1259   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1259/1260
(99 %)
4 diff
(99.7 %id)
BG315231   .a 1758 to 1983 1 to 226       226/226
(100 %)
0 diff
(100 %id)
TI_1242416642   .a 1793 to 2938 9 to 1160       1152/1265
(91 %)
37 diff
(97.1 %id)
CN314113 embryonic stem cells, cell lines H1, H7, andH9 .a 1837 to 2069 1 to 233       233/233
(100 %)
0 diff
(100 %id)
DB223046 trachea .a 1870 to 2232 2 to 364   capped   363/363
(100 %)
0 diff
(100 %id)
DA923409 small intestine .a 1898 to 2466 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CA394387 eye, RPE/choroid .a 1913 to 2598 1 to 686       686/686
(100 %)
0 diff
(100 %id)
DB146165 thymus .a 1932 to 2387 2 to 457   capped   456/456
(100 %)
1 diff
(99.8 %id)
TI_1242417442   .a 2018 to 2446 442 to 12       431/442
(97 %)
1 diff
(99.8 %id)
DB078938 testis .a 2171 to 2742 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
CN314116 embryonic stem cells, cell lines H1, H7, andH9 .a 2189 to 2886 1 to 699       699/699
(100 %)
2 diff
(99.8 %id)
CN314120 embryonic stem cells, cell lines H1, H7, andH9 .a 2249 to 2947 1 to 702       702/702
(100 %)
3 diff
(99.6 %id)
TI_1242417458   .a 2327 to 3201 884 to 11       874/884
(98 %)
3 diff
(99.7 %id)
DB354390   .a 2378 to 2953 568 to 1       568/578
(98 %)
12 diff
(98.0 %id)
AU154558   .a 2410 to 2953 547 to 1       547/547
(100 %)
7 diff
(98.8 %id)
AI915286 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2411 to 2953 546 to 1       544/547
(99 %)
18 diff
(96.8 %id)
BP873060 embryonal kidney .a 2414 to 2814 1 to 401       401/407
(98 %)
2 diff
(99.6 %id)
TI_1242417430   .a 2518 to 3697 1198 to 16       1183/1273
(92 %)
28 diff
(97.9 %id)
BJ997182 hepatoblastoma .a 2544 to 2916 373 to 1       373/373
(100 %)
0 diff
(100 %id)
BI047743 stomach .a 2555 to 3021 484 to 2       483/484
(99 %)
13 diff
(97.4 %id)
DA245929 brain .a 2590 to 3185 2 to 597   capped   596/596
(100 %)
2 diff
(99.7 %id)
DB090545 testis .a 2590 to 3170 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
TI_1242416644   .a 2668 to 3902 12 to 1242       1231/1280
(96 %)
25 diff
(98.1 %id)
CN314123 embryonic stem cells, cell lines H1, H7, andH9 .a 2691 to 3415 1 to 725       725/725
(100 %)
2 diff
(99.8 %id)
DB147692 thymus .a 2715 to 3258 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BI015625 lung_tumor .a 2851 to 3320 1 to 482       482/482
(100 %)
18 diff
(96.3 %id)
DB093016 testis .a 2939 to 3491 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DB133007 thymus .a 2958 to 3432 2 to 478   capped   477/477
(100 %)
4 diff
(99.2 %id)
DA339990 hippocampus .a 2980 to 3565 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
TI_1242416624   .a 3028 to 4214 15 to 1197       1181/1284
(91 %)
37 diff
(97.2 %id)
DB232576 trachea .a 3059 to 3609 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
T78264 liver and spleen .a 3102 to 3453 1 to 357       357/360
(99 %)
10 diff
(97.3 %id)
DB214370 trachea .a 3129 to 3658 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
BU428570 lymph .a 3196 to 3675 8 to 487       480/487
(98 %)
6 diff
(98.8 %id)
TI_154149332   .a 3196 to 3812 78 to 696       619/919
(67 %)
15 diff
(98.4 %id)
DB144016 thymus .a 3213 to 3745 2 to 536   capped   535/535
(100 %)
2 diff
(99.7 %id)
TI_1242417426   .a 3224 to 4315 1099 to 12       1088/1211
(89 %)
12 diff
(99.1 %id)
AA295518 Pancreas .a 3285 to 3526 1 to 242       242/242
(100 %)
0 diff
(100 %id)
DA044569 bladder .a 3310 to 3830 2 to 525   capped   524/524
(100 %)
4 diff
(99.3 %id)
CR738055   .a 3422 to 4066 1 to 646   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 646/647
(99 %)
11 diff
(98.3 %id)
CK906078 Islets of Langerhans, Pancreas .a 3424 to 4033 1 to 610       610/610
(100 %)
0 diff
(100 %id)
W85976 liver and spleen .a 3425 to 3642 1 to 221   fully sequenced,   221/221
(100 %)
0 diff
(100 %id)
BM127439 Islets of Langerhans, Pancreas .a 3441 to 4007 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DB145110 thymus .a 3451 to 3682 2 to 233   capped   232/232
(100 %)
0 diff
(100 %id)
TI_1242417422   .a 3541 to 4669 1142 to 9       1134/1210
(93 %)
22 diff
(98.2 %id)
DB231929 trachea .a 3545 to 4135 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
TI_1242416630   .a 3569 to 4754 1 to 1174   AAA   1174/1261
(93 %)
24 diff
(98.1 %id)
DA339711 hippocampus .a 3569 to 4175 2 to 608   capped   607/607
(100 %)
0 diff
(100 %id)
W85892 liver and spleen .a 3596 to 4036 444 to 1   fully sequenced,   444/444
(100 %)
6 diff
(98.7 %id)
DA312988 hippocampus .a 3665 to 4211 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA313025 hippocampus .a 3665 to 4196 2 to 534   capped   533/533
(100 %)
4 diff
(99.3 %id)
T78093 liver and spleen .a 3682 to 4032 356 to 1       356/410
(86 %)
8 diff
(98.1 %id)
DB285326 uterus .a 3697 to 4240 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
TI_1242417448   .a 3714 to 4007 322 to 25       298/322
(92 %)
1 diff
(99.7 %id)
BX496296 Liver .a 3762 to 4290 1 to 529       529/529
(100 %)
1 diff
(99.9 %id)
DB214681 trachea .a 3796 to 4293 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
BC029930 Cervix, carcinoma .a 3810 to 7240 1 to 3431   tiling clone, available from MGC, AAA   3431/3431
(100 %)
0 diff
(100 %id)
BI222542 cervical carcinoma cell line, cervix .a 3811 to 4543 1 to 734   available from MGC,   734/734
(100 %)
3 diff
(99.6 %id)
TI_1242416626   .a 3814 to 4951 24 to 1162   AAA   1137/1289
(88 %)
19 diff
(98.6 %id)
R07362 liver and spleen .a 3828 to 4047 220 to 1       220/220
(100 %)
0 diff
(100 %id)
DB036216 testis .a 3841 to 4287 2 to 448   capped   447/456
(98 %)
1 diff
(99.8 %id)
DA417695 thalamus .a 3859 to 4428 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
TI_1242416634   .a 3884 to 5097 23 to 1227       1208/1291
(93 %)
32 diff
(97.6 %id)
BU431075 lymph .a 3933 to 4426 8 to 501       494/501
(98 %)
7 diff
(98.7 %id)
CN314119 embryonic stem cells, DMSO-treated H9 cellline .a 3951 to 4517 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DB281479 uterus .a 3989 to 4535 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
BY796102 eye .a 4047 to 4652 1 to 606       606/606
(100 %)
0 diff
(100 %id)
DA408697 thalamus .a 4075 to 4628 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
AU117817 whole embryo, mainly head .a 4104 to 4880 2 to 780   capped   779/781
(99 %)
12 diff
(98.5 %id)
TI_1242417412   .a 4120 to 5292 1182 to 16       1167/1238
(94 %)
19 diff
(98.5 %id)
DA178955 amygdala .a 4147 to 4720 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
CN314122 embryonic stem cells, cell lines H1, H7, andH9 .a 4156 to 4809 1 to 654       654/654
(100 %)
0 diff
(100 %id)
DA826092 pericardium .a 4191 to 4648 2 to 460   capped   459/459
(100 %)
1 diff
(99.8 %id)
BX494247 Liver .a 4212 to 4529 1 to 318       318/318
(100 %)
0 diff
(100 %id)
TI_1242417474   .a 4229 to 4733 521 to 12       510/525
(97 %)
8 diff
(98.5 %id)
DA660302   .a 4237 to 4724 2 to 489   capped   488/488
(100 %)
0 diff
(100 %id)
AL157604 amygdala .a 4239 to 4932 1 to 695       695/695
(100 %)
1 diff
(99.9 %id)
DA251149 caudate nucleus .a 4263 to 4845 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
TI_1242416638   .a 4293 to 5496 9 to 1216       1208/1286
(93 %)
47 diff
(96.4 %id)
DB218651 trachea .a 4370 to 4902 2 to 535   capped   534/534
(100 %)
2 diff
(99.7 %id)
DB141746 thymus .a 4438 to 5012 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DA410501 thalamus .a 4492 to 5049 2 to 563   capped   562/562
(100 %)
4 diff
(99.3 %id)
DB106008 thymus .a 4553 to 5124 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA119872 cerebellum .a 4614 to 5165 2 to 554   capped   553/561
(98 %)
2 diff
(99.7 %id)
CF135465 lymph .a 4728 to 5212 8 to 492       485/492
(98 %)
8 diff
(98.4 %id)
TI_154163777   .a 4728 to 5465 67 to 804       736/1301
(56 %)
42 diff
(96.8 %id)
TI_1242416632   .a 4729 to 5914 17 to 1210       1194/1318
(90 %)
33 diff
(97.5 %id)
TI_1242417462   .a 4738 to 5525 808 to 20       789/808
(97 %)
1 diff
(99.9 %id)
TI_1242416648   .a 4772 to 5914 1 to 1143       1143/1318
(86 %)
35 diff
(97.4 %id)
TI_1242416260   .a 4851 to 5914 1164 to 106       1061/1235
(85 %)
18 diff
(98.6 %id)
AU127268   .a 4877 to 5601 2 to 730   capped   729/732
(99 %)
10 diff
(98.7 %id)
TI_1242418938   .a 4884 to 5914 1131 to 108       1024/1172
(87 %)
20 diff
(98.3 %id)
BG427122 Kidney .a 4920 to 5684 1 to 770       701/828
(84 %)
20 diff
(97.6 %id)
AA305809 colon .a 4931 to 5346 1 to 417       417/417
(100 %)
8 diff
(98.1 %id)
DA650741   .a 4935 to 5486 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
BM926358 brain .a 4973 to 5687 20 to 750       731/1109
(65 %)
27 diff
(97.6 %id)
DB133140 thymus .a 4989 to 5554 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA746318   .a 4997 to 5564 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
TI_1242417466   .a 5000 to 5664 683 to 16       665/684
(97 %)
1 diff
(99.9 %id)
BQ317762 colon .a 5066 to 5498 23 to 447       425/447
(95 %)
11 diff
(97.6 %id)
BE697172 colon .a 5073 to 5503 431 to 2       430/431
(99 %)
1 diff
(99.8 %id)
AL134651 brain .a 5074 to 5641 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
BF037834 adenocarcinoma, ovary .a 5088 to 5706 1 to 614       614/682
(90 %)
9 diff
(98.7 %id)
DA818361   .a 5156 to 5706 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
TI_1242416636   .a 5158 to 5914 20 to 777       758/1284
(59 %)
11 diff
(99.2 %id)
CD242468 brain, Pituitary .a 5158 to 5962 31 to 836       806/841
(95 %)
10 diff
(98.9 %id)
AW662976 2 pooled high-grade transitional celltumors, genitourinary tract .a 5161 to 5423 1 to 264       264/268
(98 %)
10 diff
(96.3 %id)
DA276402 corpus callosum .a 5164 to 5732 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
CU447673 epidermis .a 5166 to 5937 787 to 16     Submitted on the opposite strand 772/787
(98 %)
1 diff
(99.9 %id)
BU182606 melanotic melanoma, skin .a 5166 to 5897 1 to 739       739/820
(90 %)
15 diff
(98.2 %id)
DR158406 human embryonic stem cells differentiated toan early endodermal cell type .a 5247 to 6089 1 to 842       842/842
(100 %)
1 diff
(99.9 %id)
BI089446 cervix .a 5259 to 6060 1 to 806       806/806
(100 %)
18 diff
(97.8 %id)
DB458042 testis .a 5268 to 5764 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
BI913519 brain .a 5295 to 6057 1 to 765       765/769
(99 %)
6 diff
(99.3 %id)
TI_57240558   .a 5295 to 6057 83 to 847       765/851
(89 %)
12 diff
(98.6 %id)
BF244200 brain, glioblastoma .a 5299 to 5982 1 to 680       680/872
(77 %)
21 diff
(97.6 %id)
BG739831 skin .a 5392 to 6183 1 to 795       795/795
(100 %)
4 diff
(99.5 %id)
BM749551 stomach .a 5446 to 5942 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
DB243498 stomach, tumor tissue .a 5517 to 5973 2 to 459   capped   458/458
(100 %)
1 diff
(99.8 %id)
BG537933 lung .a 5542 to 6204 1 to 666       666/770
(86 %)
13 diff
(98.4 %id)
AU117083 whole embryo, mainly head .a 5544 to 6284 20 to 764   capped   745/745
(100 %)
8 diff
(99.0 %id)
BE925536 amnion_normal .a 5545 to 5922 1 to 379       379/379
(100 %)
13 diff
(96.6 %id)
CR621419 placenta .a 5582 to 6916 1 to 1335       1335/1335
(100 %)
0 diff
(100 %id)
AL540893 placenta .a 5582 to 6592 1 to 1007       1007/1007
(100 %)
19 diff
(98.2 %id)
BX432992 placenta .a 5584 to 6540 948 to 1       948/948
(100 %)
21 diff
(97.8 %id)
AV683236 hepatocellular carcinoma .a 5627 to 6417 1 to 785       785/786
(99 %)
37 diff
(95.3 %id)
W27098 eye, retina .a 5653 to 6187 10 to 553       544/569
(95 %)
37 diff
(93.5 %id)
AW592085 pooled .a 5708 to 5849 1 to 142     Submitted on the opposite strand 142/142
(100 %)
1 diff
(99.3 %id)
W26401 eye, retina .a 5725 to 6194 477 to 10       468/560
(83 %)
0 diff
(100 %id)
FN111837 breast carcinoma .a 5744 to 5812 1 to 68       68/68
(100 %)
2 diff
(97.1 %id)
AV756251 bone marrow .a 5759 to 6181 92 to 505       414/423
(97 %)
6 diff
(98.6 %id)
AW363356 colon .a 5766 to 6355 1 to 589       589/589
(100 %)
12 diff
(98.0 %id)
DA733921   .a 5843 to 6571 2 to 733   capped   732/732
(100 %)
14 diff
(98.1 %id)
AA470008.
matches multiple genes
  .a 5958 to 6519 1 to 562     also hits gene FAM149B1 562/562
(100 %)
0 diff
(100 %id)
AA384147 thyroid gland .a 6023 to 6308 1 to 287       287/289
(99 %)
3 diff
(99.0 %id)
AL047708 uterus .a 6038 to 6567 1 to 530       530/530
(100 %)
0 diff
(100 %id)
FN149911 breast carcinoma .a 6094 to 6164 1 to 70       70/81
(86 %)
3 diff
(96.3 %id)
CN314121 embryonic stem cells, DMSO-treated H9 cellline .a 6104 to 6316 1 to 213       213/213
(100 %)
3 diff
(98.6 %id)
AA359398 lung .a 6156 to 6487 1 to 335       335/336
(99 %)
5 diff
(98.6 %id)
AA330027   .a 6176 to 6523 1 to 349       349/353
(98 %)
3 diff
(99.2 %id)
TI_159716025   .a 6201 to 7014 60 to 872     Submitted on the opposite strand 813/1110
(73 %)
43 diff
(96.2 %id)
CB852462 Human Lung Epithelial cells, lung .a 6209 to 6797 1 to 590     Submitted on the opposite strand 590/590
(100 %)
6 diff
(99.0 %id)
BX432997.
matches multiple genes
placenta .a 6213 to 6532 320 to 1     also hits gene saso 320/352
(90 %)
13 diff
(96.4 %id)
BX431385 placenta .a 6234 to 6567 1 to 326       326/326
(100 %)
27 diff
(91.8 %id)
CB150626 cervix, Uterine .a 6246 to 6859 1 to 614       614/614
(100 %)
1 diff
(99.9 %id)
AL568638 placenta .a 6263 to 7225 957 to 1       957/1072
(89 %)
15 diff
(98.7 %id)
W03833 lung .a 6271 to 6495 1 to 225       225/225
(100 %)
0 diff
(100 %id)
BU929384 placenta .a 6298 to 7089 1 to 793       793/794
(99 %)
14 diff
(98.3 %id)
CN314115 embryonic stem cells, cell lines H1, H7, andH9 .a 6303 to 7019 1 to 718       718/718
(100 %)
1 diff
(99.9 %id)
BQ921362 leiomyosarcoma, uterus .a 6313 to 7194 1 to 886       886/887
(99 %)
10 diff
(98.9 %id)
DR423056 eye, Pterygium .a 6313 to 6698 1 to 387       387/387
(100 %)
16 diff
(95.9 %id)
FN141237 breast carcinoma .a 6339 to 6419 1 to 79       79/81
(97 %)
5 diff
(93.9 %id)
BG617094 Liver .a 6348 to 6941 1 to 594       594/594
(100 %)
3 diff
(99.5 %id)
AI903235 breast .a 6383 to 6722 340 to 1       340/340
(100 %)
2 diff
(99.5 %id)
AI903236 breast .a 6383 to 6722 340 to 1       340/340
(100 %)
1 diff
(99.8 %id)
AI903237 breast .a 6383 to 6722 1 to 340       340/340
(100 %)
1 diff
(99.8 %id)
AI903336 breast .a 6383 to 6722 1 to 340       340/340
(100 %)
1 diff
(99.8 %id)
AI903391 breast .a 6383 to 6722 340 to 1       340/340
(100 %)
0 diff
(100 %id)
AI903444 breast .a 6383 to 6722 1 to 341       341/341
(100 %)
2 diff
(99.5 %id)
AA306514   .a 6403 to 6935 1 to 533       533/533
(100 %)
1 diff
(99.9 %id)
DB154477 thymus .a 6407 to 6985 2 to 580   capped   579/580
(99 %)
3 diff
(99.5 %id)
BM768786 stomach .a 6427 to 7108 1 to 682       682/682
(100 %)
0 diff
(100 %id)
CB134323 Liver .a 6430 to 6942 1 to 513       513/513
(100 %)
2 diff
(99.7 %id)
AA278244 germinal center B cell .a 6433 to 6901 1 to 469       469/469
(100 %)
0 diff
(100 %id)
BE041519 pooled .a 6436 to 6836 1 to 401     Submitted on the opposite strand 401/401
(100 %)
1 diff
(99.8 %id)
AA120776 uterus .a 6445 to 6863 1 to 426   fully sequenced,   426/426
(100 %)
5 diff
(98.9 %id)
BG164831 hypernephroma, cell line, Kidney .a 6468 to 7157 1 to 694       694/694
(100 %)
16 diff
(97.7 %id)
BE895093 melanotic melanoma, skin .a 6481 to 7055 1 to 577       577/923
(62 %)
7 diff
(99.3 %id)
AA345013 gall bladder .a 6491 to 6728 1 to 238       238/238
(100 %)
0 diff
(100 %id)
BU621587 cell lines, Chondrosarcoma .a 6540 to 7240 719 to 19   AAA   701/701
(100 %)
1 diff
(99.9 %id)
BU631812 cell lines, Chondrosarcoma .a 6551 to 7240 708 to 19   AAA   690/690
(100 %)
0 diff
(100 %id)
AI808350 pooled .a 6594 to 7143 550 to 1       550/550
(100 %)
1 diff
(99.9 %id)
FN064196 breast carcinoma .a 6638 to 6744 107 to 1     Submitted on the opposite strand 107/107
(100 %)
0 diff
(100 %id)
TI_154192065   .a 6652 to 7240 50 to 639   AAA   590/590
(100 %)
1 diff
(99.9 %id)
CF130134 Chondrosarcoma Lung Metastasis cell lines, lung .a 6653 to 7240 1 to 589   AAA   589/589
(100 %)
1 diff
(99.9 %id)
CK906077 Islets of Langerhans, Pancreas .a 6655 to 7240 601 to 16   AAA   586/586
(100 %)
0 diff
(100 %id)
AA768276 Prostate, tumor .a 6660 to 7020 1 to 361       361/361
(100 %)
5 diff
(98.7 %id)
AA648929 germinal center B cell .a 6666 to 7150 493 to 9       485/493
(98 %)
0 diff
(100 %id)
DB354803 whole embryo, mainly head .a 6679 to 7240 562 to 1       562/565
(99 %)
22 diff
(96.2 %id)
TI_157599191   .a 6682 to 7240 662 to 104   AAA   559/563
(99 %)
0 diff
(100 %id)
BI762608 pooled colon, kidney, stomach .a 6684 to 7242 1 to 557       557/803
(69 %)
9 diff
(98.9 %id)
TI_57150506   .a 6684 to 7242 29 to 585       557/831
(67 %)
9 diff
(99.0 %id)
DB365923   .a 6689 to 7240 551 to 1       551/556
(99 %)
10 diff
(98.3 %id)
AI742785 pooled .a 6691 to 7240 560 to 11   AAA   550/550
(100 %)
0 diff
(100 %id)
AW665388 pooled .a 6691 to 7150 462 to 3       460/462
(99 %)
0 diff
(100 %id)
AI582251 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 6694 to 7242 549 to 1       549/549
(100 %)
1 diff
(99.9 %id)
DB355753 whole embryo, mainly head .a 6698 to 7240 563 to 21   AAA   543/550
(98 %)
11 diff
(98.0 %id)
AW008507 thymus, pooled .a 6702 to 7242 541 to 1       541/541
(100 %)
0 diff
(100 %id)
DB364090   .a 6718 to 7240 523 to 1       523/528
(99 %)
13 diff
(97.6 %id)
AA905356 pooled .a 6738 to 7240 522 to 20   AAA   503/503
(100 %)
0 diff
(100 %id)
CF529044 placenta .a 6750 to 7240 508 to 18   AAA   491/491
(100 %)
0 diff
(100 %id)
BG057518 dorsal root ganglia .a 6758 to 7150 404 to 5       400/404
(99 %)
0 diff
(100 %id)
AI571316 anaplastic oligodendroglioma, brain .a 6759 to 7240 482 to 1       482/482
(100 %)
0 diff
(100 %id)
AI369333 anaplastic oligodendroglioma, brain .a 6773 to 7244 476 to 5       472/476
(99 %)
0 diff
(100 %id)
AW338405 adenocarcinoma, Pancreas .a 6775 to 7146 377 to 6       372/377
(98 %)
0 diff
(100 %id)
BM127167 Islets of Langerhans, Pancreas .a 6799 to 7240 457 to 16   AAA   442/442
(100 %)
1 diff
(99.8 %id)
AA765393 germinal center B cell .a 6806 to 7150 353 to 9       345/354
(97 %)
0 diff
(100 %id)
DB523531 testis .a 6813 to 7245 1 to 433     Submitted on the opposite strand 433/433
(100 %)
1 diff
(99.8 %id)
AW150536 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 6813 to 7145 334 to 1       334/334
(100 %)
4 diff
(98.9 %id)
AI805910 pooled .a 6814 to 7240 447 to 21   AAA   427/429
(99 %)
3 diff
(99.4 %id)
AA652982 normal prostate, Prostate .a 6821 to 7242 422 to 1       422/422
(100 %)
0 diff
(100 %id)
AA120777 uterus .a 6833 to 7240 419 to 1   fully sequenced,   419/419
(100 %)
9 diff
(97.9 %id)
AI167173 pooled .a 6835 to 7244 412 to 3       410/412
(99 %)
0 diff
(100 %id)
AI634270 adenocarcinoma, Pancreas .a 6837 to 7244 408 to 1       408/408
(100 %)
0 diff
(100 %id)
BM701480 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6844 to 7019 1 to 176   fully sequenced,   176/176
(100 %)
0 diff
(100 %id)
AI273652 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6858 to 7240 383 to 1       383/383
(100 %)
1 diff
(99.8 %id)
AA970986 Kidney, kidney tumor .a 6879 to 7240 386 to 25   AAA   362/362
(100 %)
0 diff
(100 %id)
N68018 cochlea, ear .a 6885 to 7240 357 to 1       357/357
(100 %)
1 diff
(99.8 %id)
AW576919 breast .a 6891 to 7188 304 to 7       298/310
(96 %)
0 diff
(100 %id)
AW578877 colon .a 6891 to 7210 330 to 12       319/336
(94 %)
0 diff
(100 %id)
AW578887 colon .a 6891 to 7179 288 to 1       288/294
(97 %)
9 diff
(97.0 %id)
BE066065 breast .a 6891 to 7198 312 to 6     Submitted on the opposite strand 307/396
(77 %)
0 diff
(100 %id)
AI377741 pooled .a 6895 to 7242 348 to 1       348/348
(100 %)
1 diff
(99.8 %id)
BF197482 Kidney .a 6935 to 7240 306 to 1       306/306
(100 %)
1 diff
(99.7 %id)
BG567873 Liver .a 6953 to 7744 1 to 792       792/803
(98 %)
9 diff
(98.9 %id)
AA854129 parathyroid gland, parathyroid tumor .a 6956 to 7248 295 to 3       293/295
(99 %)
0 diff
(100 %id)
EC477820 Prostate .a 6989 to 7086 1 to 97       97/97
(100 %)
1 diff
(99.0 %id)
BM674532 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6989 to 7517 541 to 14   fully sequenced, AAA   528/528
(100 %)
5 diff
(99.1 %id)
EC516772 Prostate .a 6990 to 7086 1 to 96       96/96
(100 %)
1 diff
(99.0 %id)
AI369558   .a 7001 to 7244 246 to 3       244/246
(99 %)
0 diff
(100 %id)
N70476 lung .a 7014 to 7240 228 to 1       228/233
(97 %)
1 diff
(99.6 %id)
FN115252 breast carcinoma .a 7058 to 7160 1 to 106       106/106
(100 %)
2 diff
(98.2 %id)
AA402620.
matches multiple genes
ovarian tumor, ovary .a 7080 to 7514 1 to 435   tiling clone, Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base), also hits gene ATRN 435/435
(100 %)
5 diff
(98.9 %id)
AI540658 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 7083 to 7240 158 to 1       158/158
(100 %)
0 diff
(100 %id)
H03222 placenta .a 7093 to 7462 1 to 374       374/456
(82 %)
5 diff
(99.0 %id)
FN170805 breast carcinoma .a 7164 to 7240 76 to 1     Submitted on the opposite strand 76/76
(100 %)
1 diff
(98.7 %id)
CD242114 Blood vessels - aorta, basilar and artery .a 7303 to 7915 1 to 613       613/789
(77 %)
4 diff
(99.5 %id)
AI457256 carcinoid, lung .a 7320 to 7764 1 to 445     Submitted on the opposite strand 445/445
(100 %)
1 diff
(99.8 %id)
BF110274 carcinoid, lung .a 7330 to 7905 1 to 575     Submitted on the opposite strand 575/575
(100 %)
2 diff
(99.7 %id)
AA987939 carcinoid, lung .a 7407 to 7802 1 to 400     Submitted on the opposite strand 400/400
(100 %)
3 diff
(99.3 %id)
AI989914 pooled germ cell tumors .a 7449 to 7917 469 to 1       469/470
(99 %)
1 diff
(99.8 %id)
AA412286.
matches multiple genes
  .a 7470 to 7916 459 to 13   tiling clone, AAA also hits gene bloyvy 447/447
(100 %)
0 diff
(100 %id)
AW235948 Kidney .a 7498 to 7916 427 to 1       427/438
(97 %)
8 diff
(98.2 %id)
BF216445 brain, glioblastoma .a 7561 to 8196 1 to 634       634/875
(72 %)
20 diff
(97.8 %id)
H04015 placenta .a 7562 to 7895 338 to 1       338/379
(89 %)
10 diff
(97.4 %id)
BM055252 Islets of Langerhans, Pancreas .a 7603 to 7917 1 to 315       315/322
(97 %)
2 diff
(99.4 %id)
AA889226   .a 7607 to 7917 312 to 2       311/312
(99 %)
0 diff
(100 %id)
AA889916 parathyroid gland, parathyroid tumor .a 7634 to 7917 292 to 9       284/292
(97 %)
0 diff
(100 %id)
AW388486 stomach .a 7680 to 7905 1 to 225       225/225
(100 %)
6 diff
(97.4 %id)
AW388487 stomach .a 7695 to 7905 1 to 211       211/211
(100 %)
2 diff
(99.1 %id)
AA278702 germinal center B cell .a 7838 to 8350 513 to 1   tiling clone,   513/513
(100 %)
0 diff
(100 %id)
DA829712 placenta .b 1 to 419 2 to 420   tiling clone, capped   419/433
(96 %)
2 diff
(99.6 %id)
DB374628 placenta .b 2612 to 3117 504 to 1   tiling clone,   504/510
(98 %)
10 diff
(98.1 %id)
AK308399 trachea .c 1 to 1455 6 to 1461   tiling clone,   1461/1461
(100 %)
3 diff
(99.8 %id)
DB158348 thymus .c 1 to 594 7 to 600   tiling clone, capped   599/599
(100 %)
0 diff
(100 %id)
DB164703 thymus .c 1 to 575 7 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA391351 thalamus .c 1 to 560 6 to 566   capped   565/573
(98 %)
5 diff
(99.2 %id)
DA444257 tongue, tumor tissue .c 1 to 560 6 to 566   capped   565/569
(99 %)
5 diff
(99.2 %id)
DA550998   .c 1 to 493 6 to 498   capped   497/497
(100 %)
0 diff
(100 %id)
DA780152 brain .c 1 to 561 6 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB040820 testis .c 1 to 560 6 to 565   capped   564/568
(99 %)
4 diff
(99.3 %id)
DB096988 testis .c 1 to 560 6 to 565   capped   564/567
(99 %)
6 diff
(99.0 %id)
DB157488 thymus .c 1 to 584 6 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DB220700 trachea .c 1 to 553 6 to 562   capped   561/561
(100 %)
5 diff
(99.2 %id)
DB077290 testis .c 1 to 569 4 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA044969 bladder .c 1 to 568 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA491388 brain .c 1 to 577 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DA756008   .c 1 to 584 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA934506 Spleen .c 1 to 488 2 to 491   capped   490/490
(100 %)
2 diff
(99.6 %id)
DB152110 thymus .c 1 to 533 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DB154594 thymus .c 1 to 554 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB162275 thymus .c 1 to 601 2 to 603   capped   602/602
(100 %)
2 diff
(99.7 %id)
BC030273 Kidney, hypernephroma .c 1097 to 3099 12 to 2014   tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 2003/2004
(99 %)
4 diff
(99.9 %id)
BG169314 hypernephroma, cell line, Kidney .c 1097 to 1812 1 to 720   available from MGC,   720/779
(92 %)
14 diff
(98.3 %id)
BI850604 hypernephroma, cell line, Kidney .c 1097 to 1789 1 to 692   available from MGC,   692/692
(100 %)
8 diff
(98.9 %id)
DB511658 testis .c 1316 to 1687 15 to 386     Submitted on the opposite strand 372/390
(95 %)
9 diff
(97.7 %id)
DN914356   .c 3023 to 3567 1 to 545   tiling clone,   545/545
(100 %)
0 diff
(100 %id)
AL157602 amygdala .d 1 to 454 1 to 454 exact tiling clone,   454/454
(100 %)
0 diff
(100 %id)
AI287275 lymph node, mantle cell lymphoma .e 1 to 536 537 to 1 Y5X L8F Q9K T13Y A14C ... tiling clone,   537/537
(100 %)
8 diff
(98.6 %id)
BF105972 lung .f 1 to 522 1 to 523 A96X F100L V101* tiling clone,   523/523
(100 %)
3 diff
(99.5 %id)
BX953664   .g 1 to 693 1 to 692   tiling clone,   692/692
(100 %)
4 diff
(99.5 %id)
BX953653   .g 2 to 738 1 to 737 C96X V104G tiling clone,   737/737
(100 %)
4 diff
(99.5 %id)
T06211   .h 1 to 333 334 to 1 E15* tiling clone,   334/334
(100 %)
3 diff
(99.2 %id)
DA742422   .i 1 to 572 7 to 578   tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
CN314118 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 549 to 1291 1 to 743 V98G tiling clone,   743/743
(100 %)
1 diff
(99.9 %id)
DA129237 alzheimer cortex .j-u 1 to 567 2 to 569 N5T tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
BU661592 blood .j-u 264 to 912 11 to 658 N5T tiling clone,   648/658
(98 %)
8 diff
(98.8 %id)
BG429095 Kidney .k-u 1 to 710 1 to 721 E55D S56E I57Y H58S C59L ... tiling clone,   721/721
(100 %)
28 diff
(96.2 %id)
W03661 liver and spleen .l-u 1 to 345 1 to 352 C37X A39C T40N L41G I42* tiling clone, fully sequenced,   352/352
(100 %)
12 diff
(96.6 %id)
AA602212   .l-u 227 to 591 1 to 365   tiling clone,   365/365
(100 %)
7 diff
(98.1 %id)
N80136 liver and spleen .l-u 315 to 697 390 to 1   tiling clone, fully sequenced,   390/390
(100 %)
12 diff
(97.0 %id)
DB201761 trachea .m 1 to 587 2 to 588 exact tiling clone, capped   587/587
(100 %)
0 diff
(100 %id)
DB233140 trachea .n 1 to 570 6 to 575 exact tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
DA414177 thalamus .o 1 to 554 6 to 559 exact tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
DN915128   .p-u 1 to 544 1 to 543 exact tiling clone,   543/543
(100 %)
2 diff
(99.7 %id)
AA640075 lung, lung tumor .q-u 1 to 373 373 to 1 exact tiling clone,   373/373
(100 %)
0 diff
(100 %id)
AI803866 serous papillary carcinoma, high grade, 2pooled tumors, uterus .r-u 1 to 364 364 to 1 N20X tiling clone,   364/364
(100 %)
1 diff
(99.8 %id)
C17567 placenta Gene BTAF1, variant not shown              
AB208843 brain Gene BTAF1, variant not shown         This clone was ignored    
AV703067 adrenal gland Gene BTAF1, variant not shown         Suspected internal deletion, this clone was ignored    
AK303554 thymus Gene BTAF1, variant not shown         This clone was ignored    
DC334727 hippocampus Gene BTAF1, variant not shown         This clone was ignored    
DC345380 tongue, tumor tissue Gene BTAF1, variant not shown         This clone was ignored    
DC425963 tongue, tumor tissue Gene BTAF1, variant not shown         This clone was ignored    
DB315568 brain Gene BTAF1, variant not shown         This clone was ignored    
DA494684 brain Gene BTAF1, variant not shown       capped This clone was ignored    
AV657745 corresponding non cancerous liver tissue Gene BTAF1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
CF136066 lymph Gene BTAF1, variant not shown         This clone was ignored    
DB370423   Gene BTAF1, variant not shown         This clone was ignored    
DA737803   Gene BTAF1, variant not shown       capped This clone was ignored    
DC410078 thymus Gene BTAF1, variant not shown         This clone was ignored    
TI_154152892   Gene BTAF1, variant not shown         This clone was ignored    
TI_154164881   Gene BTAF1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u, .l-u, .m, .n, .o, .p-u, .q-u, .r-u, .s-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI