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Gene BRF1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
345 supporting clones for gene BRF1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM152371 leukopheresis .a 1 to 399 1 to 400   tiling clone,   400/400
(100 %)
4 diff
(99.0 %id)
AK294899 brain .a 14 to 2369 1 to 2356 D454N tiling clone,   2356/2356
(100 %)
1 diff
(100.0 %id)
DC322544 brain .a 14 to 589 1 to 577       577/579
(99 %)
3 diff
(99.5 %id)
DC344339 thalamus .a 14 to 551 1 to 538       538/538
(100 %)
0 diff
(100 %id)
DC320629 brain .a 18 to 558 1 to 542       542/542
(100 %)
2 diff
(99.7 %id)
DC344206 thalamus .a 18 to 583 1 to 566       566/566
(100 %)
0 diff
(100 %id)
AL710815 human skeletal muscle .a 62 to 776 1 to 714       714/714
(100 %)
2 diff
(99.8 %id)
BU507343 leiomyosarcoma, uterus .a 983 to 1614 1 to 633   tiling clone,   633/886
(71 %)
6 diff
(99.4 %id)
BX440172 brain, fetal brain .b 1 to 379 1 to 380   tiling clone,   380/485
(78 %)
14 diff
(97.2 %id)
AL540823 placenta .b 31 to 1110 1 to 1074       1074/1074
(100 %)
28 diff
(97.4 %id)
BX440529 brain, fetal brain .b 32 to 912 1 to 882   tiling clone,   882/890
(99 %)
12 diff
(98.7 %id)
DA921672 small intestine .b 296 to 652 2 to 358   capped   357/357
(100 %)
0 diff
(100 %id)
NM_001519.2   .b 317 to 3976 1 to 3660 exact RefSeq,   3660/3660
(100 %)
0 diff
(100 %id)
U28838   .b 317 to 3976 14 to 3649 N88D D151V R224G A231G A339R ...     3636/3649
(99 %)
47 diff
(98.8 %id)
AL527490 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 318 to 1355 1 to 1030       1030/1040
(99 %)
15 diff
(98.6 %id)
AW162911 brain, frontal lobe .b 318 to 580 1 to 264       264/264
(100 %)
2 diff
(99.3 %id)
AW162937 brain, frontal lobe .b 318 to 601 1 to 284       284/284
(100 %)
2 diff
(99.3 %id)
CN273921 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 364 to 596 1 to 233       233/233
(100 %)
0 diff
(100 %id)
BG717573 testis .b 366 to 1110 1 to 750   tiling clone, available from MGC,   750/824
(91 %)
12 diff
(98.6 %id)
BX354184 Neuroblastoma Cot 25-normalized .b 383 to 1118 1 to 731       731/731
(100 %)
33 diff
(95.5 %id)
CR976285 T-Lymphocytes .b 387 to 678 1 to 294       294/299
(98 %)
4 diff
(98.7 %id)
TI_57247336   .b 567 to 1333 28 to 787       760/787
(96 %)
60 diff
(92.4 %id)
BI912402 leukocyte .b 581 to 1333 1 to 760       760/760
(100 %)
21 diff
(97.3 %id)
U75276   .b 615 to 3972 1 to 3359 exact tiling clone,   3359/3363
(99 %)
14 diff
(99.6 %id)
DA413358 thalamus .b 622 to 1175 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DN989741 brain, whole brain .b 636 to 1262 9 to 635       627/635
(98 %)
0 diff
(100 %id)
BQ439795 embryonal carcinoma, cell line, testis .b 654 to 1116 1 to 463       463/1267
(36 %)
8 diff
(99.4 %id)
DA884559   .b 764 to 1331 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BC071637 Brain, anaplastic oligodendroglioma with1p/19q loss .b 1253 to 3975 1 to 2723   tiling clone, available from MGC, AAA   2723/2723
(100 %)
0 diff
(100 %id)
AU125250   .b 1645 to 2403 2 to 758   capped   757/761
(99 %)
8 diff
(99.0 %id)
AU127927   .b 1862 to 2368 2 to 509   capped   508/508
(100 %)
3 diff
(99.5 %id)
BM546998 brain, hippocampus .b 2006 to 3055 1 to 1062       1062/1062
(100 %)
24 diff
(97.8 %id)
BF984029 duodenal adenocarcinoma, cell line, small intestine .b 2045 to 2749 27 to 722       696/986
(70 %)
20 diff
(98.0 %id)
AU137514 placenta .b 2150 to 2807 2 to 662   capped   661/661
(100 %)
8 diff
(98.8 %id)
BG035124 adenocarcinoma, cell line, Liver .b 2197 to 3018 1 to 823       823/1154
(71 %)
32 diff
(97.3 %id)
BM718814 eye, fetal eye .b 2199 to 2883 1 to 685       685/685
(100 %)
4 diff
(99.5 %id)
BU179479 melanotic melanoma, cell line, skin .b 2236 to 3073 1 to 846       846/892
(94 %)
23 diff
(97.5 %id)
DB057455 testis .b 2252 to 2767 2 to 519   capped   518/518
(100 %)
2 diff
(99.7 %id)
BX333839 Neuroblastoma Cot 50-normalized .b 2264 to 3061 32 to 833       802/833
(96 %)
22 diff
(97.4 %id)
BF983841 duodenal adenocarcinoma, cell line, small intestine .b 2310 to 3073 1 to 750       752/753
(99 %)
32 diff
(95.8 %id)
BG760154 B-cells, primary B-cells from tonsils (cell line) .b 2317 to 3073 1 to 768       768/772
(99 %)
29 diff
(96.3 %id)
BU845961 ovary, teratocarcinoma, cell line .b 2319 to 3062 1 to 745       745/914
(81 %)
4 diff
(99.6 %id)
BF530865 anaplastic oligodendroglioma with 1p/19qloss, brain .b 2329 to 3061 15 to 749       735/1002
(73 %)
23 diff
(97.8 %id)
AW949568   .b 2340 to 3008 11 to 679       669/679
(98 %)
8 diff
(98.9 %id)
BE613648 leiomyosarcoma, uterus .b 2361 to 2959 1 to 600       600/600
(100 %)
5 diff
(99.2 %id)
BG331225 large cell carcinoma, lung .b 2403 to 3127 1 to 730       730/969
(75 %)
42 diff
(95.7 %id)
CN273923 embryonic stem cells, cell lines H1, H7, andH9 .b 2426 to 2766 13 to 352       340/352
(96 %)
13 diff
(96.4 %id)
CD611914   .b 2451 to 3186 14 to 741       729/741
(98 %)
16 diff
(97.9 %id)
BI198093 brain, neuroblastoma .b 2493 to 3146 1 to 657       657/657
(100 %)
6 diff
(99.1 %id)
BF311742 brain, neuroblastoma .b 2496 to 3052 4 to 564   AAA   564/1151
(49 %)
15 diff
(98.7 %id)
CD611912   .b 2502 to 2963 477 to 16       462/485
(95 %)
0 diff
(100 %id)
CD611913   .b 2502 to 2963 9 to 470       463/486
(95 %)
8 diff
(98.4 %id)
BE260197 brain, neuroblastoma .b 2513 to 3123 1 to 609       609/611
(99 %)
9 diff
(98.6 %id)
BF800524 colon_ins .b 2585 to 3040 1 to 455       455/455
(100 %)
10 diff
(97.9 %id)
BF800517 colon_ins .b 2587 to 3037 20 to 469       450/469
(95 %)
6 diff
(98.8 %id)
R13194 whole brain .b 2608 to 2973 1 to 372       372/424
(87 %)
18 diff
(95.8 %id)
AI905318 breast .b 2621 to 2856 237 to 2       236/250
(94 %)
3 diff
(98.8 %id)
BM719908 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2690 to 3178 1 to 489       489/489
(100 %)
0 diff
(100 %id)
CF146576 CNCAP(3)T-225 cell line, Prostate .b 2693 to 3316 1 to 624       624/624
(100 %)
2 diff
(99.7 %id)
CF146615 CNCAP(3)T-225 cell line, Prostate .b 2693 to 3316 1 to 624       624/624
(100 %)
2 diff
(99.7 %id)
TI_154179052   .b 2696 to 3454 66 to 813       748/917
(81 %)
20 diff
(97.9 %id)
TI_154179097   .b 2696 to 3439 71 to 813       743/906
(82 %)
9 diff
(99.1 %id)
AA232923 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2703 to 3133 9 to 439       431/439
(98 %)
2 diff
(99.6 %id)
AA193473.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 2708 to 3208 17 to 516     also hits gene RNGTT 500/520
(96 %)
11 diff
(97.9 %id)
AL135580 melanoma (MeWo cell line) .b 2722 to 3222 1 to 501       501/501
(100 %)
0 diff
(100 %id)
BQ952299 sciatic nerve .b 2739 to 3374 1 to 636       636/897
(70 %)
24 diff
(97.4 %id)
CF454236 peripheral nervous system .b 2765 to 3475 37 to 747       711/747
(95 %)
6 diff
(99.2 %id)
EC489875 Prostate .b 2786 to 2886 100 to 2       99/100
(99 %)
0 diff
(100 %id)
EC519068 Prostate .b 2786 to 2886 101 to 1       101/101
(100 %)
0 diff
(100 %id)
EC552979 Prostate .b 2786 to 2886 101 to 1       101/101
(100 %)
0 diff
(100 %id)
TI_57235182   .b 2793 to 3334 243 to 805       687/848
(81 %)
90 diff
(89.4 %id)
CR607892 Neuroblastoma Cot 25-normalized .b 2795 to 3910 1 to 1116       1116/1116
(100 %)
0 diff
(100 %id)
BX332139 Neuroblastoma Cot 25-normalized .b 2795 to 3732 1 to 925       925/1028
(89 %)
16 diff
(98.5 %id)
BI908929 leukocyte .b 2798 to 3334 215 to 772       558/815
(68 %)
31 diff
(96.2 %id)
BM704411 eye, RPE and Choroid .b 2813 to 3404 1 to 592   fully sequenced,   592/592
(100 %)
1 diff
(99.9 %id)
AL527489 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 2882 to 3945 1049 to 1       1049/1086
(96 %)
22 diff
(98.0 %id)
R25679 whole brain .b 2884 to 3248 1 to 372       372/382
(97 %)
18 diff
(95.3 %id)
BF343727 brain, glioblastoma with EGFR amplification .b 2920 to 3667 1 to 749       749/992
(75 %)
31 diff
(96.9 %id)
BX440171 brain, fetal brain .b 2924 to 3948 1021 to 1       1021/1122
(90 %)
12 diff
(99.0 %id)
BG982807 colon_normal .b 2936 to 3145 12 to 220       209/229
(91 %)
6 diff
(97.4 %id)
TI_149287016   .b 2987 to 3975 1047 to 79   AAA   969/1189
(81 %)
35 diff
(97.1 %id)
BU931251 ovary, teratocarcinoma, cell line .b 3006 to 3674 1 to 676       676/965
(70 %)
20 diff
(98.0 %id)
CN273922 embryonic stem cells, cell lines H1, H7, andH9 .b 3013 to 3374 1 to 362       362/362
(100 %)
0 diff
(100 %id)
CV348335 placenta_normal .b 3015 to 3340 372 to 45     Submitted on the opposite strand 328/372
(88 %)
28 diff
(92.5 %id)
TI_159706246   .b 3025 to 3970 1032 to 94   AAA   939/1055
(89 %)
22 diff
(98.0 %id)
CB054514 brain, glioblastoma (pooled) .b 3050 to 3454 9 to 413   fully sequenced,   405/413
(98 %)
1 diff
(99.8 %id)
BG036019 adenocarcinoma, cell line, Liver .b 3057 to 3776 1 to 712       712/944
(75 %)
13 diff
(98.7 %id)
CD611915   .b 3096 to 3893 802 to 6       797/803
(99 %)
0 diff
(100 %id)
TI_151758419   .b 3160 to 3978 916 to 107       810/990
(81 %)
0 diff
(100 %id)
TI_149311925   .b 3170 to 3978 925 to 127       799/1055
(75 %)
0 diff
(100 %id)
BQ669443 epidermoid carcinoma, cell line, salivary gland .b 3187 to 3848 1 to 663       663/946
(70 %)
3 diff
(99.7 %id)
BU633496 cell lines, Chondrosarcoma .b 3239 to 3975 755 to 19   AAA   737/737
(100 %)
1 diff
(99.9 %id)
CT002557 T-Lymphocytes .b 3307 to 3916 1 to 611       611/611
(100 %)
2 diff
(99.7 %id)
TI_149288560   .b 3315 to 3973 736 to 81   AAA   656/661
(99 %)
12 diff
(98.2 %id)
BQ005468 Chondrosarcoma, Left Pelvis .b 3317 to 3975 675 to 17   AAA   659/659
(100 %)
1 diff
(99.9 %id)
BX329528 Neuroblastoma Cot 25-normalized .b 3324 to 3967 650 to 8       643/650
(98 %)
0 diff
(100 %id)
BM826819 Ascites, stomach .b 3339 to 3750 13 to 425       413/425
(97 %)
6 diff
(98.6 %id)
CA426549 cell lines, Chondrosarcoma .b 3345 to 3975 647 to 17   AAA   631/631
(100 %)
2 diff
(99.7 %id)
BM972406 lung .b 3373 to 3975 619 to 17   AAA   603/603
(100 %)
0 diff
(100 %id)
BM970398 lung .b 3374 to 3973 614 to 16   AAA   599/599
(100 %)
1 diff
(99.9 %id)
BU730564 eye, RPE and Choroid .b 3374 to 3973 618 to 19   fully sequenced, AAA   600/600
(100 %)
0 diff
(100 %id)
BM676769 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3374 to 3975 618 to 17   AAA   602/602
(100 %)
1 diff
(99.9 %id)
CA432596 cell lines, Chondrosarcoma .b 3374 to 3975 620 to 19   AAA   602/602
(100 %)
2 diff
(99.7 %id)
BM153529 leukopheresis .b 3380 to 3914 535 to 1       535/535
(100 %)
0 diff
(100 %id)
AA453904 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3395 to 3852 1 to 453       453/453
(100 %)
6 diff
(98.7 %id)
AA527786 breast .b 3395 to 3974 573 to 3       571/573
(99 %)
0 diff
(100 %id)
BQ215849 embryonal carcinoma, cell line, testis .b 3401 to 3973 1 to 573   AAA   573/573
(100 %)
0 diff
(100 %id)
AI498800 anaplastic oligodendroglioma, brain .b 3417 to 3976 559 to 1       559/563
(99 %)
10 diff
(98.3 %id)
AU148944   .b 3417 to 3975 559 to 1       559/562
(99 %)
19 diff
(96.7 %id)
CB054513 brain, glioblastoma (pooled) .b 3424 to 3975 577 to 26   fully sequenced, AAA   552/552
(100 %)
0 diff
(100 %id)
AI074621 liver and spleen .b 3441 to 3974 537 to 4       534/537
(99 %)
0 diff
(100 %id)
BM716943 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3443 to 3973 1 to 531   AAA   531/531
(100 %)
0 diff
(100 %id)
AA873005 germinal center B cell .b 3445 to 3776 329 to 1       329/329
(100 %)
4 diff
(98.8 %id)
BE245460 leukopheresis .b 3469 to 3914 446 to 1       446/446
(100 %)
2 diff
(99.6 %id)
AI435275 B-cell, chronic lymphotic leukemia .b 3479 to 3975 510 to 14   AAA   497/497
(100 %)
2 diff
(99.6 %id)
AW003639 brain, four pooled pituitary adenomas .b 3479 to 3776 298 to 1       298/298
(100 %)
0 diff
(100 %id)
AI885848 anaplastic oligodendroglioma, brain .b 3481 to 3975 495 to 1       495/495
(100 %)
2 diff
(99.6 %id)
BG459776   .b 3486 to 3954 471 to 7     Submitted on the opposite strand 465/473
(98 %)
0 diff
(100 %id)
AW008964 colon .b 3492 to 3974 485 to 2       484/486
(99 %)
0 diff
(100 %id)
BF436048 pooled .b 3495 to 3978 487 to 4   tiling clone,   484/487
(99 %)
0 diff
(100 %id)
AA649059 germinal center B cell .b 3496 to 3776 280 to 1       280/280
(100 %)
3 diff
(99.0 %id)
AW205229   .b 3505 to 3975 485 to 16   AAA   470/470
(100 %)
5 diff
(99.0 %id)
BE466723 pooled germ cell tumors .b 3506 to 3975 470 to 1       470/470
(100 %)
2 diff
(99.6 %id)
DB376778 placenta .b 3517 to 3970 451 to 1       451/486
(92 %)
23 diff
(95.3 %id)
AU150309   .b 3518 to 3975 458 to 1       458/458
(100 %)
7 diff
(98.5 %id)
BE794940 lung, small cell carcinoma .b 3528 to 3978 1 to 449       449/449
(100 %)
2 diff
(99.6 %id)
AA453787.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3558 to 3977 421 to 1     also hits gene TOR1AIP1 421/421
(100 %)
3 diff
(99.3 %id)
AI591005 ovary, tumor, 5 pooled (see description) .b 3561 to 3776 216 to 1       216/216
(100 %)
0 diff
(100 %id)
AI083842 anaplastic oligodendroglioma, brain .b 3571 to 3975 422 to 18   AAA   405/405
(100 %)
1 diff
(99.8 %id)
AA232937 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3580 to 3975 397 to 1       397/397
(100 %)
4 diff
(99.0 %id)
AA595484 Prostate, prostate tumor .b 3581 to 3776 196 to 1       196/196
(100 %)
0 diff
(100 %id)
AK295579 hippocampus .c 1 to 2292 1 to 2292 exact tiling clone,   2292/2292
(100 %)
1 diff
(100.0 %id)
DC331911 hippocampus .c 1 to 567 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
BP355448   .c 1 to 581 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP355484   .c 1 to 584 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
BX441112 brain, fetal brain .c 163 to 1129 1 to 967       967/967
(100 %)
9 diff
(99.1 %id)
BQ323597 colon_ins .c 299 to 672 20 to 394       375/394
(95 %)
15 diff
(96.2 %id)
BG289674 bladder, transitional cell papilloma, cell line .c 345 to 1035 1 to 686       686/959
(71 %)
10 diff
(99.0 %id)
DC350291 brain .c 376 to 842 1 to 467       467/467
(100 %)
0 diff
(100 %id)
DN999420   .c 475 to 996 8 to 529       522/529
(98 %)
6 diff
(98.9 %id)
BX431141 brain, fetal brain .c 526 to 1362 1 to 838       838/905
(92 %)
17 diff
(98.2 %id)
DB054223 testis .c 529 to 1054 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
BF527188 anaplastic oligodendroglioma with 1p/19qloss, brain .c 560 to 1355 1 to 798       668/981
(68 %)
25 diff
(97.5 %id)
BF527189 anaplastic oligodendroglioma with 1p/19qloss, brain .c 560 to 1308 1 to 745   available from MGC,   745/922
(80 %)
30 diff
(96.8 %id)
CO246497 Chondrosarcoma Lung Metastasis cell lines, lung .c 573 to 1316 33 to 767       735/840
(87 %)
29 diff
(96.6 %id)
DA504894 brain .c 595 to 1165 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA508017 brain .c 595 to 1054 2 to 461   capped   460/460
(100 %)
1 diff
(99.8 %id)
BF842842 head_neck .c 596 to 951 362 to 7     Submitted on the opposite strand 356/362
(98 %)
0 diff
(100 %id)
BG770476 melanotic melanoma, high MDR (cell line), skin .c 620 to 1444 1 to 829       829/855
(96 %)
10 diff
(98.9 %id)
BG177892 adenocarcinoma, cell line, Prostate .c 727 to 1168 1 to 441       441/464
(95 %)
9 diff
(98.1 %id)
AL042139 testis .c 742 to 1178 1 to 436       436/436
(100 %)
2 diff
(99.6 %id)
BF347647 anaplastic oligodendroglioma with 1p/19qloss, brain .c 746 to 1407 1 to 656       656/658
(99 %)
13 diff
(98.1 %id)
BM548449 brain, hippocampus .c 746 to 1497 18 to 767       750/1124
(66 %)
19 diff
(98.4 %id)
BG750088 eye, normal pigmented retinal epithelium .c 755 to 1588 1 to 826       826/826
(100 %)
25 diff
(97.0 %id)
BU185956 melanotic melanoma, cell line, skin .c 759 to 1556 19 to 821       803/959
(83 %)
33 diff
(96.6 %id)
BU179343 melanotic melanoma, cell line, skin .c 768 to 1590 1 to 827       827/887
(93 %)
17 diff
(98.1 %id)
BQ896891 melanotic melanoma, cell line, skin .c 768 to 1479 1 to 715       715/941
(75 %)
15 diff
(98.5 %id)
BQ878480 melanotic melanoma, cell line, skin .c 768 to 1510 1 to 744       744/889
(83 %)
2 diff
(99.8 %id)
BU145834 melanotic melanoma, cell line, skin .c 768 to 1435 1 to 674       674/923
(73 %)
11 diff
(98.9 %id)
BQ878005 melanotic melanoma, cell line, skin .c 768 to 1654 1 to 895       895/900
(99 %)
19 diff
(97.9 %id)
BU173436 melanotic melanoma, cell line, skin .c 768 to 1668 1 to 905       905/909
(99 %)
18 diff
(98.1 %id)
BU166396 melanotic melanoma, cell line, skin .c 768 to 1498 1 to 734       734/901
(81 %)
5 diff
(99.5 %id)
BU157218 melanotic melanoma, cell line, skin .c 768 to 1640 1 to 880       880/915
(96 %)
19 diff
(98.0 %id)
BU185397 melanotic melanoma, cell line, skin .c 768 to 1583 1 to 824       824/906
(90 %)
23 diff
(97.5 %id)
BU168716 melanotic melanoma, cell line, skin .c 768 to 1500 1 to 732       732/892
(82 %)
9 diff
(99.0 %id)
BU163301 melanotic melanoma, cell line, skin .c 768 to 1573 1 to 814       814/933
(87 %)
22 diff
(97.7 %id)
BU838798 melanotic melanoma, cell line, skin .c 768 to 1448 1 to 683       683/902
(75 %)
10 diff
(98.9 %id)
BQ683034 melanotic melanoma, cell line, skin .c 768 to 1304 1 to 538       538/1066
(50 %)
12 diff
(98.9 %id)
BQ680035 melanotic melanoma, cell line, skin .c 768 to 1190 1 to 423       423/1160
(36 %)
5 diff
(99.6 %id)
BU149105 melanotic melanoma, cell line, skin .c 768 to 1229 1 to 463       463/978
(47 %)
2 diff
(99.8 %id)
BQ888140 melanotic melanoma, cell line, skin .c 768 to 1606 1 to 846       846/907
(93 %)
22 diff
(97.6 %id)
BQ680530 melanotic melanoma, cell line, skin .c 768 to 1495 1 to 729       729/967
(75 %)
24 diff
(97.6 %id)
BQ678282 melanotic melanoma, cell line, skin .c 768 to 1500 1 to 737       737/962
(76 %)
11 diff
(98.9 %id)
DA768293 brain .c 770 to 1286 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DA348304 substantia nigra .c 815 to 1375 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BG284655 adenocarcinoma, cell line, Prostate .c 822 to 1604 1 to 772       772/949
(81 %)
22 diff
(97.7 %id)
AL044944 testis .c 846 to 1163 1 to 318       318/318
(100 %)
0 diff
(100 %id)
DA713749   .c 908 to 1415 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
BX456261 brain, fetal brain .c 954 to 1709 1 to 756       756/756
(100 %)
1 diff
(99.9 %id)
BX430957 brain, fetal brain .c 987 to 1868 1 to 880       878/882
(99 %)
17 diff
(98.1 %id)
BX430958 brain, fetal brain .c 987 to 1305 1 to 315       315/374
(84 %)
7 diff
(98.2 %id)
CB127451 cervix, Uterine .c 1025 to 1472 1 to 448       448/448
(100 %)
0 diff
(100 %id)
BE932780 head_neck .c 1033 to 1419 392 to 1       392/392
(100 %)
18 diff
(95.5 %id)
DB196395 trachea .c 1049 to 1553 2 to 507   capped   506/506
(100 %)
1 diff
(99.9 %id)
DA521132 brain .c 1061 to 1630 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BX414457 brain, fetal brain .c 1107 to 1857 1 to 751       751/751
(100 %)
0 diff
(100 %id)
DA153838 amygdala .c 1117 to 1684 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
CB156731 brain .c 1125 to 1700 1 to 576       576/576
(100 %)
0 diff
(100 %id)
CD637317   .c 1269 to 1961 1 to 694       694/694
(100 %)
3 diff
(99.6 %id)
CD637316   .c 1271 to 2005 750 to 16       735/750
(98 %)
2 diff
(99.8 %id)
TI_57242484   .c 1341 to 1981 31 to 678       648/723
(89 %)
23 diff
(96.9 %id)
BI917890 brain .c 1342 to 1981 1 to 647       647/692
(93 %)
17 diff
(97.6 %id)
CB215658 normal endometrium, late proliferativephase, cycle day 13, uterus .c 1380 to 2020 1 to 641       641/641
(100 %)
0 diff
(100 %id)
BF340194 brain, glioblastoma with EGFR amplification .c 1406 to 2130 1 to 727       727/727
(100 %)
5 diff
(99.4 %id)
BG325452 Kidney, renal cell adenocarcinoma .c 1413 to 2085 36 to 704       669/891
(75 %)
11 diff
(98.8 %id)
BG419565 Kidney, renal cell adenocarcinoma .c 1413 to 2182 36 to 809       774/1047
(73 %)
43 diff
(95.9 %id)
DA939933 Spleen .c 1415 to 2015 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
BX456260 brain, fetal brain .c 1465 to 2218 1 to 753   tiling clone,   753/753
(100 %)
8 diff
(99.0 %id)
AI909820 breast .c 1481 to 1774 1 to 295       295/296
(99 %)
3 diff
(99.0 %id)
AA349500 brain .c 1646 to 1948 1 to 303       303/303
(100 %)
0 diff
(100 %id)
BC086856 Skin, melanotic melanoma. .d 1 to 3309 1 to 3309 exact tiling clone, AAA   3309/3309
(100 %)
1 diff
(100.0 %id)
BU194632 melanotic melanoma, skin .d 3 to 453 1 to 453       453/1053
(43 %)
9 diff
(99.2 %id)
AW027564 thymus, pooled .d 2955 to 3306 365 to 14   AAA   352/352
(100 %)
5 diff
(98.6 %id)
AI914918 ovary, tumor, 5 pooled (see description) .d 2958 to 3112 153 to 1       153/153
(100 %)
2 diff
(98.7 %id)
BY800004 eye .d 2963 to 3307 1 to 345       345/345
(100 %)
0 diff
(100 %id)
AA813405   .d 2983 to 3314 332 to 1       332/332
(100 %)
1 diff
(99.7 %id)
BF683681 leiomyosarcoma cell line, uterus .d 2985 to 3313 1 to 328   AAA   328/335
(97 %)
2 diff
(99.5 %id)
AA039771 heart .d 2986 to 3252 268 to 1       268/268
(100 %)
8 diff
(97.1 %id)
AW204773   .d 2989 to 3306 335 to 18   AAA   318/328
(96 %)
1 diff
(99.7 %id)
TI_153988507   .d 2989 to 3306 414 to 97   AAA   318/380
(83 %)
1 diff
(99.8 %id)
AA349499 brain .d 3003 to 3311 309 to 1       309/309
(100 %)
1 diff
(99.7 %id)
AA911100 pooled germ cell tumors .d 3022 to 3306 285 to 1       285/285
(100 %)
1 diff
(99.7 %id)
AI655003 pooled germ cell tumors .d 3022 to 3306 285 to 1       285/285
(100 %)
0 diff
(100 %id)
AI696784 adenocarcinoma, Pancreas .d 3025 to 3112 88 to 1       88/89
(98 %)
0 diff
(100 %id)
BF431009 Kidney .d 3026 to 3311 286 to 1       286/286
(100 %)
2 diff
(99.4 %id)
AA947998 Kidney, kidney tumor .d 3040 to 3112 73 to 1       73/73
(100 %)
0 diff
(100 %id)
BX436305 thymus .d 3097 to 3308 218 to 7       212/218
(97 %)
0 diff
(100 %id)
BG820706 anaplastic oligodendroglioma with 1p/19qloss, brain .d 3106 to 3306 1 to 201   AAA   201/201
(100 %)
1 diff
(99.6 %id)
AA552470 normal prostatic epithelial cells, Prostate .d 3126 to 3306 181 to 1       181/181
(100 %)
2 diff
(98.9 %id)
AW590056 pooled germ cell tumors .d 3139 to 3305 167 to 1       167/167
(100 %)
0 diff
(100 %id)
AW085894 esophagus, squamous cell carcinoma .d 3144 to 3311 202 to 35   AAA   168/168
(100 %)
6 diff
(96.5 %id)
DN997871 breast cancer, Mammary gland (cancer tissue) .e 1 to 560 1 to 560   tiling clone,   560/560
(100 %)
3 diff
(99.5 %id)
DA888586   .e 388 to 952 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA060187 cerebellum .e 398 to 971 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA451673 tongue, tumor tissue .e 456 to 1022 2 to 568   tiling clone, capped   567/568
(99 %)
0 diff
(100 %id)
AU141673 thyroid gland .e 561 to 1266 2 to 702   tiling clone, capped   701/701
(100 %)
9 diff
(98.8 %id)
AU159175 thyroid gland .e 2370 to 2859 490 to 1   tiling clone,   490/492
(99 %)
13 diff
(97.4 %id)
AJ297407   .f 1 to 3567 9 to 3572 exact tiling clone,   3564/3572
(99 %)
14 diff
(99.7 %id)
NM_145685.2   .f 1 to 3567 1 to 3567 exact RefSeq, AAA   3567/3567
(100 %)
0 diff
(100 %id)
BC103860 PCR rescued clones .g 1 to 2585 1 to 467   tiling clone, Suspected internal deletion 467/468
(99 %)
0 diff
(100 %id)
AK096471 brain .h 1 to 2857 2 to 2858 E208G E402G tiling clone, available from FLJ,   2858/2858
(100 %)
5 diff
(99.9 %id)
DA769449 brain .h 1 to 573 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA796820 brain .h 210 to 757 2 to 549   capped   548/551
(99 %)
2 diff
(99.7 %id)
DB325657 brain .h 2281 to 2857 577 to 1       577/577
(100 %)
1 diff
(99.9 %id)
BM152577 leukopheresis .i 1 to 552 1 to 552   tiling clone,   552/552
(100 %)
4 diff
(99.3 %id)
BC127832 PCR rescued clones, C list .i 234 to 1363 1138 to 8     Submitted on the opposite strand 1131/1140
(99 %)
5 diff
(99.6 %id)
BC150588 PCR rescued clones, C list .i 234 to 1363 1138 to 8   tiling clone, Submitted on the opposite strand 1131/1140
(99 %)
4 diff
(99.7 %id)
BC016743 testis .j 1 to 1111 1 to 1111 exact tiling clone, available from MGC, AAA   1111/1111
(100 %)
2 diff
(99.9 %id)
TI_1948099729   .j 307 to 884 129 to 708       580/1475
(39 %)
12 diff
(99.2 %id)
TI_1948099900   .j 307 to 605 127 to 425   fully sequenced,   299/324
(92 %)
6 diff
(98.2 %id)
TI_1948100075   .j 307 to 605 131 to 429   fully sequenced,   299/429
(69 %)
6 diff
(98.7 %id)
TI_1948100248   .j 307 to 927 135 to 761       627/1499
(41 %)
26 diff
(98.3 %id)
CV029769 mixed .j 310 to 923 1 to 614       614/614
(100 %)
1 diff
(99.9 %id)
AJ297408   .j 368 to 1108 1 to 743       743/743
(100 %)
6 diff
(99.2 %id)
TI_1948099901   .j 544 to 935 520 to 129   fully sequenced,   392/520
(75 %)
0 diff
(100 %id)
TI_1948100076   .j 544 to 935 521 to 130   fully sequenced,   392/521
(75 %)
0 diff
(100 %id)
AI734215 lung .j 739 to 1098 1 to 360       360/360
(100 %)
0 diff
(100 %id)
N91109 lung .j 749 to 1112 367 to 5       363/384
(94 %)
0 diff
(100 %id)
W20443 lung .j 749 to 1112 12 to 375       364/375
(97 %)
6 diff
(98.4 %id)
AI668652 lung .j 772 to 1112 344 to 4   tiling clone,   341/344
(99 %)
0 diff
(100 %id)
AI806823 pooled .j 772 to 1112 344 to 4       341/344
(99 %)
0 diff
(100 %id)
AK124665 amygdala .k 1 to 2722 2 to 2723   tiling clone, available from FLJ,   2723/2723
(100 %)
0 diff
(100 %id)
DA168317 amygdala .k 1 to 555 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB217702 trachea .k 180 to 694 2 to 518   capped   517/517
(100 %)
5 diff
(99.1 %id)
DA187027 amygdala .k 202 to 748 2 to 548   capped   547/549
(99 %)
4 diff
(99.3 %id)
DB302500 amygdala .k 2158 to 2722 565 to 1       565/565
(100 %)
0 diff
(100 %id)
DA116891 cerebellum .l 1 to 535 2 to 536   tiling clone, capped   535/535
(100 %)
2 diff
(99.7 %id)
AK125024 thalamus .l 3 to 3175 1 to 3173 exact tiling clone, available from FLJ,   3173/3173
(100 %)
7 diff
(99.8 %id)
DA399295 thalamus .l 4 to 548 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
CR985847 T-Lymphocytes .l 432 to 1074 1 to 648   tiling clone,   648/648
(100 %)
5 diff
(99.3 %id)
DB312060 thalamus .l 2645 to 3175 531 to 1       531/533
(99 %)
9 diff
(98.4 %id)
DA418714 thalamus .m 1 to 578 2 to 579 exact tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
BC133655 PCR rescued clones .o 1 to 813 1 to 813 exact tiling clone,   813/813
(100 %)
0 diff
(100 %id)
DA410159 thalamus .p-u 1 to 533 2 to 534   tiling clone, capped   533/533
(100 %)
0 diff
(100 %id)
AK126499 uterus .p-u 472 to 4139 1 to 3668   tiling clone, available from FLJ,   3668/3668
(100 %)
7 diff
(99.9 %id)
DB278622 uterus .p-u 473 to 999 2 to 528   capped   527/527
(100 %)
3 diff
(99.5 %id)
DB352341 uterus .p-u 3582 to 4139 558 to 1       558/558
(100 %)
2 diff
(99.7 %id)
BC103861 PCR rescued clones .q 1 to 824 1 to 824 exact tiling clone,   824/824
(100 %)
0 diff
(100 %id)
DB172263 kidney, tumor tissue .r 1 to 572 2 to 573 exact tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
AI073340 breast .s 1 to 493 1 to 493 exact tiling clone, Submitted on the opposite strand 493/493
(100 %)
0 diff
(100 %id)
DB098700 testis .t 1 to 585 2 to 586   tiling clone, capped   585/585
(100 %)
2 diff
(99.7 %id)
DA527295 brain .t 194 to 777 2 to 585 exact tiling clone, capped   584/584
(100 %)
0 diff
(100 %id)
DA514643 brain .t 218 to 762 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
CV572280 cornea, eye .u 1 to 636 1 to 636   tiling clone,   636/636
(100 %)
0 diff
(100 %id)
BF344091 brain, glioblastoma with EGFR amplification .u 394 to 1115 22 to 737 S17A H18T L19* tiling clone,   716/868
(82 %)
21 diff
(97.6 %id)
DB058472 testis .va 1 to 520 2 to 521 exact tiling clone, capped   520/520
(100 %)
0 diff
(100 %id)
DA531021 brain .vb 1 to 596 2 to 597   tiling clone, capped   596/596
(100 %)
0 diff
(100 %id)
DA319514 hippocampus .vb 56 to 522 2 to 468   capped   467/467
(100 %)
0 diff
(100 %id)
DA418549 thalamus .vb 56 to 699 2 to 645   capped   644/644
(100 %)
0 diff
(100 %id)
DA230169 brain .vb 62 to 614 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA020457   .vb 65 to 624 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA110329 cerebellum .vb 65 to 630 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA239462 brain .vb 65 to 665 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
DA756303   .vb 65 to 497 2 to 434   capped   433/433
(100 %)
0 diff
(100 %id)
DA776471 brain .vb 65 to 594 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DA793188 brain .vb 65 to 604 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA323806 hippocampus .vb 71 to 510 2 to 441   capped   440/440
(100 %)
1 diff
(99.8 %id)
DA755393   .vb 71 to 626 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA246924 brain .vb 72 to 665 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DA246941 brain .vb 72 to 510 2 to 440   capped   439/439
(100 %)
0 diff
(100 %id)
BP229772 brain .vb 88 to 672 1 to 588       588/588
(100 %)
14 diff
(97.7 %id)
DB236035 trachea .vb 91 to 675 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA329702 hippocampus .vb 92 to 551 2 to 461   capped   460/460
(100 %)
0 diff
(100 %id)
DA499844 brain .vb 92 to 643 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA811046 brain .vb 92 to 624 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA811104 brain .vb 92 to 648 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA092046 cerebellum .vb 93 to 668 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA093246 cerebellum .vb 93 to 624 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA093663 cerebellum .vb 93 to 596 2 to 506   capped   505/505
(100 %)
1 diff
(99.9 %id)
DA096546 cerebellum .vb 93 to 627 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DA194584 amygdala .vb 93 to 688 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA214562 brain .vb 93 to 551 2 to 460   capped   459/459
(100 %)
2 diff
(99.6 %id)
DA217747 brain .vb 93 to 624 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DA220218 brain .vb 93 to 653 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA228077 brain .vb 93 to 651 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA236020 brain .vb 93 to 665 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA246031 brain .vb 93 to 663 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA316668 hippocampus .vb 93 to 625 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA317701 hippocampus .vb 93 to 636 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA329373 hippocampus .vb 93 to 370 2 to 279   capped   278/278
(100 %)
0 diff
(100 %id)
DA335142 hippocampus .vb 93 to 662 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA335827 hippocampus .vb 93 to 694 2 to 604   capped   603/603
(100 %)
2 diff
(99.7 %id)
DA339196 hippocampus .vb 93 to 657 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA339530 hippocampus .vb 93 to 661 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA405129 thalamus .vb 93 to 637 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA416602 thalamus .vb 93 to 646 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA416725 thalamus .vb 93 to 628 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA503143 brain .vb 93 to 596 2 to 505   capped   504/504
(100 %)
0 diff
(100 %id)
DA774519 brain .vb 93 to 660 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA890551 rectum .vb 93 to 596 2 to 505   capped   504/504
(100 %)
2 diff
(99.7 %id)
DA973881 synovial membrane tissue from rheumatioidarthritis .vb 93 to 657 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA985786 synovial membrane tissue from rheumatioidarthritis .vb 93 to 658 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB063034 testis .vb 93 to 636 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DB240933 trachea .vb 93 to 684 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA321137 hippocampus .vb 95 to 551 2 to 458   capped   457/457
(100 %)
2 diff
(99.6 %id)
DA092099 cerebellum .vb 96 to 648 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA184046 amygdala .vb 96 to 624 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DA201389 brain .vb 96 to 675 2 to 582   capped   581/581
(100 %)
4 diff
(99.4 %id)
DA212999 brain .vb 96 to 593 2 to 500   capped   499/499
(100 %)
3 diff
(99.4 %id)
DA215123 brain .vb 96 to 593 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DA331136 hippocampus .vb 96 to 648 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA331681 hippocampus .vb 96 to 679 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA411120 thalamus .vb 96 to 723 2 to 629   capped   628/628
(100 %)
0 diff
(100 %id)
DA811397 brain .vb 96 to 651 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA858881 placenta .vb 96 to 624 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DB006508 cervix, tumor tissue .vb 96 to 545 2 to 451   capped   450/450
(100 %)
1 diff
(99.8 %id)
DB213651 trachea .vb 96 to 604 2 to 512   capped   511/511
(100 %)
2 diff
(99.7 %id)
DA186971 amygdala .vb 190 to 744 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA246312 brain .vb 328 to 896 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
BX460759 brain, fetal brain .vb 421 to 1361 1 to 941 V31X L32W A37X tiling clone,   941/941
(100 %)
17 diff
(98.2 %id)
DA332786 hippocampus .vc 1 to 590 2 to 591   tiling clone, capped   590/590
(100 %)
0 diff
(100 %id)
BX489094   .vc 298 to 815 1 to 520       520/520
(100 %)
9 diff
(98.3 %id)
DA810119 brain .vc 546 to 1098 2 to 554   tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
BX489095   .vc 1777 to 2380 602 to 1   tiling clone,   602/602
(100 %)
4 diff
(99.4 %id)
CD237435 Pituitary .vd-u 1 to 696 1 to 696 L46F tiling clone,   696/696
(100 %)
13 diff
(98.2 %id)
AW074505 colon, juvenile granulosa tumor .ve-u 1 to 242 242 to 1   tiling clone,   242/242
(100 %)
0 diff
(100 %id)
AW014628   .ve-u 168 to 283 116 to 1   tiling clone,   116/116
(100 %)
2 diff
(98.3 %id)
AJ297406   Gene BRF1, variant not shown         Suspected internal deletion, this clone was ignored    
DB312806 thalamus Gene BRF1, variant not shown              
DA417376 thalamus Gene BRF1, variant not shown       capped      
CA405826 adipose Gene BRF1, variant not shown              
DA533434 brain Gene BRF1, variant not shown       capped This clone was ignored    
AI202795 anaplastic oligodendroglioma, brain Gene BRF1, variant not shown         Suspected internal deletion, this clone was ignored    
AI492150 B-cell, chronic lymphotic leukemia Gene BRF1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AI636949 pooled germ cell tumors Gene BRF1, variant not shown         This clone was ignored    
AI632432 pooled germ cell tumors Gene BRF1, variant not shown         This clone was ignored    
AI962792 pooled germ cell tumors Gene BRF1, variant not shown         This clone was ignored    
BU858248 adenocarcinoma, cell line, breast Gene BRF1, variant not shown              
BC103859 PCR rescued clones Gene BRF1, variant not shown         Suspected internal deletion, this clone was ignored    
DB141760 thymus Gene BRF1, variant not shown       capped This clone was ignored    
DB345417 thymus Gene BRF1, variant not shown         This clone was ignored    
TI_149276957   Gene BRF1, variant not shown         This clone was ignored    
TI_159702970   Gene BRF1, variant not shown         Suspected internal deletion, this clone was ignored    
BM969066 lung, Primary Lung Epithelial Cells Gene BRF1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n-u, .o, .p-u, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd-u, .ve-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI