To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene BRCA2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
81 supporting clones for gene BRCA2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AL601892   .a 1 to 712 1 to 712   tiling clone,   712/718
(99 %)
4 diff
(99.5 %id)
NM_000059.3   .a 11 to 11396 1 to 11386 V2466A RefSeq,   11386/11386
(100 %)
1 diff
(100.0 %id)
DN912261   .a 15 to 495 1 to 481       481/481
(100 %)
3 diff
(99.4 %id)
DN912260   .a 16 to 495 480 to 1   tiling clone,   480/481
(99 %)
1 diff
(99.8 %id)
CD705611 normal nasopharynx .a 36 to 463 32 to 458       427/458
(93 %)
11 diff
(97.6 %id)
BE244582 leukopheresis .a 38 to 164 1 to 127       127/129
(98 %)
5 diff
(96.2 %id)
BE245239 leukopheresis .a 38 to 339 1 to 302       302/302
(100 %)
8 diff
(97.4 %id)
AA333018 Embryo, 8 weeks .a 367 to 699 1 to 336       334/338
(98 %)
4 diff
(98.9 %id)
BQ226936 embryonal carcinoma, cell line, testis .a 607 to 1382 1 to 785   tiling clone,   785/892
(88 %)
17 diff
(98.1 %id)
BE242124 leukopheresis .a 807 to 1091 1 to 286       286/286
(100 %)
7 diff
(97.6 %id)
BP220720 colon .a 1041 to 1602 1 to 562   tiling clone,   562/562
(100 %)
7 diff
(98.8 %id)
BG459792   .a 1217 to 1760 543 to 1   tiling clone, Submitted on the opposite strand 543/564
(96 %)
17 diff
(97.0 %id)
AW075697 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .a 1384 to 1824 428 to 1   tiling clone,   428/428
(100 %)
23 diff
(94.7 %id)
FN088066 breast carcinoma .a 1531 to 1647 119 to 1     Submitted on the opposite strand 119/119
(100 %)
6 diff
(95.0 %id)
AI439788 lymph node, lymphoma, follicular mixed small and largecell .a 1541 to 2049 510 to 1   tiling clone,   510/517
(98 %)
12 diff
(97.7 %id)
BM150414 leukopheresis .a 1644 to 2050 415 to 9   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 407/415
(98 %)
0 diff
(100 %id)
AI355687 lung .a 2359 to 2817 459 to 1   tiling clone,   459/459
(100 %)
0 diff
(100 %id)
DN915584   .a 2445 to 2763 319 to 1       319/320
(99 %)
10 diff
(96.9 %id)
BE245207 leukopheresis .a 2528 to 2818 290 to 1       290/290
(100 %)
4 diff
(98.7 %id)
EH321084   .a 2587 to 2674 1 to 88       88/88
(100 %)
0 diff
(100 %id)
AA215820 germinal center B cell .a 2689 to 3193 1 to 504   tiling clone,   504/504
(100 %)
2 diff
(99.7 %id)
AA938167 germinal center B cell .a 3558 to 4100 543 to 2   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 542/543
(99 %)
0 diff
(100 %id)
DB071759 testis .a 3628 to 4185 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
AW362907 colon .a 3678 to 4324 643 to 1   tiling clone,   643/676
(95 %)
9 diff
(98.7 %id)
EH314508   .a 3942 to 4013 1 to 72       72/72
(100 %)
0 diff
(100 %id)
DB069915 testis .a 3966 to 4523 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
BP280658   .a 4093 to 4672 1 to 582   tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
AL602008   .a 4187 to 4668 1 to 482   tiling clone,   482/482
(100 %)
0 diff
(100 %id)
BQ439258 embryonal carcinoma, cell line, testis .a 5041 to 5915 1 to 878   tiling clone,   878/878
(100 %)
7 diff
(99.3 %id)
DA807080 brain .a 5344 to 5908 2 to 566   tiling clone, capped   565/565
(100 %)
2 diff
(99.7 %id)
BG502609 embryonal carcinoma, testis .a 5543 to 5972 1 to 434   tiling clone,   434/606
(71 %)
10 diff
(98.4 %id)
BP289480 lung .a 6346 to 6924 1 to 578   tiling clone,   578/578
(100 %)
2 diff
(99.7 %id)
DN915585   .a 6360 to 6648 1 to 287   tiling clone,   287/289
(99 %)
3 diff
(99.0 %id)
CF143354 lymph .a 6687 to 7310 8 to 631       624/631
(98 %)
6 diff
(99.1 %id)
TI_154174704   .a 6687 to 7351 80 to 744   tiling clone,   665/666
(99 %)
4 diff
(99.4 %id)
DA542875   .a 6910 to 7468 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB074188 testis .a 7252 to 7805 2 to 555   tiling clone, capped   554/554
(100 %)
2 diff
(99.7 %id)
CN409236 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 7977 to 8651 1 to 676   tiling clone,   676/676
(100 %)
1 diff
(99.9 %id)
AI949397 2 pooled tumors (clear cell type), Kidney .a 8033 to 8769 734 to 1       734/778
(94 %)
32 diff
(95.9 %id)
BG614511 embryonal carcinoma, testis .a 8185 to 8874 1 to 695       695/887
(78 %)
18 diff
(98.0 %id)
BM171992 embryonal carcinoma, testis .a 8186 to 8803 1 to 619       619/632
(97 %)
7 diff
(98.9 %id)
AA280905 germinal center B cell .a 8308 to 8836 1 to 525       525/525
(100 %)
4 diff
(99.3 %id)
AI343430 colon, colon tumor, RER+ .a 8413 to 9169 759 to 1   tiling clone,   759/759
(100 %)
6 diff
(99.3 %id)
EH353023   .a 8543 to 8615 1 to 73       73/73
(100 %)
0 diff
(100 %id)
AA742610 germinal center B cell .a 8637 to 9177 541 to 3       539/541
(99 %)
24 diff
(95.6 %id)
BM839248 Ascites, stomach .a 8658 to 9104 1 to 447       447/447
(100 %)
2 diff
(99.6 %id)
FN164041 breast carcinoma .a 8661 to 8754 93 to 1     Submitted on the opposite strand 93/96
(96 %)
1 diff
(99.0 %id)
AA765738 germinal center B cell .a 8791 to 9177 387 to 3       385/387
(99 %)
2 diff
(99.5 %id)
AI688632 pooled .a 8845 to 9482 637 to 1       637/637
(100 %)
9 diff
(98.6 %id)
BE552211 pooled germ cell tumors .a 8870 to 9173 304 to 1   tiling clone,   306/306
(100 %)
0 diff
(100 %id)
BX496533 Liver .a 8886 to 9437 1 to 553       553/554
(99 %)
3 diff
(99.5 %id)
BE503897 pooled germ cell tumors .a 9046 to 9168 124 to 2       123/124
(99 %)
0 diff
(100 %id)
BG772619 testis .a 9149 to 9944 1 to 798       798/829
(96 %)
20 diff
(97.6 %id)
BU954242 mixed (pool of 40 RNAs) .a 9168 to 9714 1 to 547   tiling clone,   547/1031
(53 %)
5 diff
(99.6 %id)
BP269632 thyroid .a 9225 to 9802 1 to 578       578/578
(100 %)
3 diff
(99.5 %id)
AW368356 head_neck .a 9381 to 10007 624 to 1       624/626
(99 %)
10 diff
(98.5 %id)
BG290037 bladder, transitional cell papilloma, cell line .a 9441 to 10146 1 to 699   tiling clone,   699/965
(72 %)
19 diff
(98.1 %id)
BY798783 eye .a 9807 to 10426 1 to 620   tiling clone,   620/620
(100 %)
0 diff
(100 %id)
AU143426   .b 1 to 675 2 to 677   tiling clone, capped   676/683
(98 %)
5 diff
(99.3 %id)
DB384673   .b 2913 to 3407 493 to 1   tiling clone,   493/493
(100 %)
10 diff
(98.0 %id)
BG773203 testis .c 1 to 670 1 to 670   tiling clone, available from MGC,   670/670
(100 %)
4 diff
(99.5 %id)
BG773127 testis .c 1 to 813 1 to 814   available from MGC,   814/814
(100 %)
10 diff
(98.8 %id)
BC026160 testis .c 6 to 2008 6 to 2008 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 2003/2003
(100 %)
0 diff
(100 %id)
BC047568 testis .c 6 to 2008 1 to 2003 exact available from MGC, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 2003/2003
(100 %)
0 diff
(100 %id)
BX102368 liver and spleen .d-u 1 to 748 1 to 748   tiling clone,   748/748
(100 %)
0 diff
(100 %id)
H47777 liver and spleen .d-u 48 to 408 1 to 365       365/369
(98 %)
7 diff
(98.2 %id)
AA740751 germinal center B cell .d-u 383 to 1182 802 to 1   tiling clone,   802/854
(93 %)
46 diff
(94.7 %id)
BP394255 pancreatic islet .d-u 397 to 886 489 to 1       489/489
(100 %)
1 diff
(99.8 %id)
AL044849 testis .d-u 460 to 643 1 to 184       184/184
(100 %)
0 diff
(100 %id)
BG166449 hypernephroma, cell line, Kidney .d-u 493 to 1242 1 to 767       767/767
(100 %)
31 diff
(96.0 %id)
BG166383 hypernephroma, cell line, Kidney .d-u 494 to 1232 1 to 723       723/924
(78 %)
20 diff
(97.9 %id)
BF805550 colon_ins .d-u 527 to 837 310 to 1     Submitted on the opposite strand 310/310
(100 %)
1 diff
(99.7 %id)
AA741449 germinal center B cell .d-u 801 to 1215 415 to 1       415/415
(100 %)
1 diff
(99.8 %id)
BU568005 testis .d-u 835 to 1626 1 to 794   tiling clone,   794/797
(99 %)
12 diff
(98.5 %id)
BF814836 colon_ins .d-u 877 to 1216 339 to 3     Submitted on the opposite strand 337/339
(99 %)
0 diff
(100 %id)
H48122 liver and spleen .d-u 895 to 1245 353 to 1       353/353
(100 %)
2 diff
(99.5 %id)
AA767988 germinal center B cell .d-u 947 to 1275 340 to 12   tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 329/329
(100 %)
1 diff
(99.7 %id)
BG562419 Liver .d-u 1301 to 1805 506 to 1     Submitted on the opposite strand 506/656
(77 %)
15 diff
(97.8 %id)
CN266741 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d-u 1378 to 2047 1 to 670   tiling clone,   670/670
(100 %)
3 diff
(99.6 %id)
BE869603 adenocarcinoma, colon .e 1 to 790 1 to 790 S43R K44Q F45I L46F D47R ... tiling clone,   790/920
(85 %)
19 diff
(98.0 %id)
DB329032 placenta Gene BRCA2, variant not shown         This clone was ignored    
DA860806 placenta Gene BRCA2, variant not shown       capped This clone was ignored    
DQ897648   Gene BRCA2, variant not shown         This clone was ignored    
U43746   Gene BRCA2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI