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Gene BPHLTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
289 supporting clones for gene BPHL back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_004332.2   .a 1 to 1548 1 to 1548 exact RefSeq,   1548/1548
(100 %)
0 diff
(100 %id)
BG433915 Kidney .a 27 to 683 1 to 657   tiling clone,   657/657
(100 %)
1 diff
(99.9 %id)
BG613224 embryonal carcinoma, testis .a 31 to 838 1 to 814       814/882
(92 %)
16 diff
(98.2 %id)
BG426643 Kidney .a 34 to 789 1 to 773       734/776
(94 %)
40 diff
(94.9 %id)
AJ617684   .a 37 to 1378 1 to 1342   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 1342/1342
(100 %)
0 diff
(100 %id)
BG426469 Kidney .a 39 to 829 1 to 805       805/808
(99 %)
39 diff
(95.2 %id)
CN333657 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 53 to 687 1 to 635       635/635
(100 %)
2 diff
(99.7 %id)
BU150889 brain, neuroblastoma, cell line .a 53 to 949 1 to 909       909/939
(96 %)
35 diff
(96.3 %id)
AW071802 anaplastic oligodendroglioma, brain .a 143 to 835 1 to 693     Submitted on the opposite strand 693/693
(100 %)
22 diff
(96.9 %id)
BF058083 fibrotheoma, ovary .a 143 to 825 1 to 683     Submitted on the opposite strand 683/684
(99 %)
6 diff
(99.2 %id)
NR_026650.1   .b 1 to 1776 1 to 1776 exact RefSeq, tiling clone,   1776/1776
(100 %)
0 diff
(100 %id)
AK314909 alzheimer cortex .b 31 to 1153 1 to 1123 exact     1123/1123
(100 %)
0 diff
(100 %id)
AH005586   .b 117 to 1606 1 to 1490 exact AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 1490/1490
(100 %)
0 diff
(100 %id)
X81372 breast carcinoma .b 117 to 1606 1 to 1490 exact AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 1490/1490
(100 %)
0 diff
(100 %id)
CX870117 embryonic stem .b 175 to 986 14 to 824       811/824
(98 %)
6 diff
(99.3 %id)
BC106901 PCR rescued clones .b 198 to 1247 1 to 1050 exact     1050/1053
(99 %)
1 diff
(100.0 %id)
CX782373 human embryonic stem cells .b 384 to 1173 10 to 798     Submitted on the opposite strand 789/798
(98 %)
6 diff
(99.3 %id)
AI672895 colon, colonic mucosa from 3 patients with Crohn'sdisease .b 389 to 906 1 to 518     Submitted on the opposite strand 518/519
(99 %)
2 diff
(99.7 %id)
BG426090 Kidney .b 399 to 1075 1 to 675       675/887
(76 %)
17 diff
(98.1 %id)
AV723821 hypothalamus .b 419 to 1054 1 to 639       639/683
(93 %)
13 diff
(98.1 %id)
CD106172 brain, Pituitary .b 460 to 1236 1 to 780       780/855
(91 %)
11 diff
(98.8 %id)
BF883373 lung_tumor .b 554 to 1063 21 to 530       510/530
(96 %)
6 diff
(98.9 %id)
BF883402 lung_tumor .b 564 to 879 38 to 358       319/358
(89 %)
15 diff
(95.9 %id)
BF883403 lung_tumor .b 564 to 1013 40 to 493       454/493
(92 %)
12 diff
(97.6 %id)
AI222926 carcinoid, lung .b 582 to 970 77 to 465     Submitted on the opposite strand 389/465
(83 %)
9 diff
(98.1 %id)
AI701823 carcinoid, lung .b 582 to 963 98 to 476     Submitted on the opposite strand 379/476
(79 %)
13 diff
(97.3 %id)
BE671194 carcinoid, lung .b 582 to 1117 99 to 634     Submitted on the opposite strand 536/634
(84 %)
8 diff
(98.8 %id)
BF448366 carcinoid, lung .b 582 to 1096 99 to 613     Submitted on the opposite strand 515/613
(84 %)
7 diff
(98.9 %id)
BF444970 carcinoid, lung .b 598 to 1132 1 to 535     Submitted on the opposite strand 535/538
(99 %)
18 diff
(96.7 %id)
CX752194 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 613 to 1328 9 to 723     Submitted on the opposite strand 715/723
(98 %)
6 diff
(99.2 %id)
AA167197   .b 621 to 1137 1 to 507     Submitted on the opposite strand 509/555
(91 %)
17 diff
(97.0 %id)
BI764112 pooled colon, kidney, stomach .b 647 to 1421 836 to 13     Submitted on the opposite strand 562/837
(67 %)
17 diff
(98.0 %id)
TI_57146607   .b 647 to 1421 868 to 45     Submitted on the opposite strand 562/869
(64 %)
17 diff
(98.1 %id)
N46097 multiple sclerosis lesions .b 651 to 928 1 to 278       278/278
(100 %)
5 diff
(98.3 %id)
BM793376 Ascites, stomach .b 653 to 1284 1 to 632       632/632
(100 %)
2 diff
(99.7 %id)
BJ993668 hepatoblastoma .b 664 to 1079 1 to 416       416/416
(100 %)
0 diff
(100 %id)
BF883436 lung_tumor .b 671 to 1111 451 to 10     Submitted on the opposite strand 442/451
(98 %)
1 diff
(99.8 %id)
BF883379 lung_tumor .b 731 to 1156 461 to 31     Submitted on the opposite strand 431/461
(93 %)
1 diff
(99.8 %id)
BF883667 lung_tumor .b 737 to 1065 341 to 12     Submitted on the opposite strand 329/341
(96 %)
9 diff
(97.4 %id)
BI257946 cervical carcinoma cell line, cervix .b 799 to 1638 859 to 16     Submitted on the opposite strand 844/890
(94 %)
24 diff
(97.4 %id)
BQ425602 melanotic melanoma, skin .b 816 to 1606 837 to 35   AAA Submitted on the opposite strand 803/881
(91 %)
20 diff
(97.8 %id)
TI_151797359   .b 818 to 1428 116 to 727       612/687
(89 %)
9 diff
(98.7 %id)
X57653   .b 821 to 1117 1 to 297       297/297
(100 %)
5 diff
(98.4 %id)
BG121617 adenocarcinoma, cell line, Liver .b 826 to 1591 1 to 766       766/768
(99 %)
15 diff
(98.1 %id)
TI_149301226   .b 838 to 1774 1006 to 84   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 923/952
(96 %)
24 diff
(97.5 %id)
R10551 liver and spleen .b 844 to 988 1 to 145       145/145
(100 %)
4 diff
(97.3 %id)
BM455725 lymph, lymphoma, cell line .b 876 to 1546 1 to 676       676/1090
(62 %)
29 diff
(97.4 %id)
T28159 colon .b 886 to 1162 11 to 288       278/305
(91 %)
8 diff
(97.4 %id)
CA306822 Alveolar Macrophage, lung .b 896 to 1624 728 to 1       728/728
(100 %)
2 diff
(99.8 %id)
CA420674 Bone, Enchondroma cell line .b 911 to 1606 714 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 696/696
(100 %)
2 diff
(99.8 %id)
CF272247 Brain glioblastoma .b 941 to 1772 876 to 37   AAA Submitted on the opposite strand 840/872
(96 %)
8 diff
(99.1 %id)
BU933348 mixed (pool of 40 RNAs) .b 944 to 1460 1 to 522       522/905
(57 %)
9 diff
(99.1 %id)
AA167111   .b 973 to 1237 269 to 3     Submitted on the opposite strand 267/286
(93 %)
7 diff
(97.6 %id)
BE703346 nervous_normal .b 980 to 1339 10 to 368       359/374
(95 %)
9 diff
(97.6 %id)
AW840204 leiomios .b 997 to 1162 171 to 8       164/171
(95 %)
0 diff
(100 %id)
BU594882 mixed (pool of 40 RNAs) .b 998 to 1584 1 to 603       603/947
(63 %)
27 diff
(97.2 %id)
AW276222 lung, two pooled squamous cell carcinomas .b 1022 to 1627 606 to 1       606/606
(100 %)
0 diff
(100 %id)
BM977067 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 1037 to 1774 754 to 17   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 738/738
(100 %)
4 diff
(99.5 %id)
N46098 multiple sclerosis lesions .b 1087 to 1631 546 to 1       546/551
(99 %)
7 diff
(98.8 %id)
R10145 liver and spleen .b 1204 to 1570 374 to 1       374/374
(100 %)
11 diff
(97.1 %id)
BJ993669 hepatoblastoma .b 1364 to 1768 405 to 1       405/405
(100 %)
0 diff
(100 %id)
AL832502 human endometrium .c 1 to 3690 1 to 3689 G36S K191M F272L V273Y tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 3689/3689
(100 %)
8 diff
(99.8 %id)
AA171449   .c 19 to 432 1 to 412   tiling clone,   412/412
(100 %)
8 diff
(98.1 %id)
CN333658 embryonic stem cells, cell lines H1, H7, andH9 .c 691 to 1222 1 to 533   tiling clone,   533/533
(100 %)
2 diff
(99.7 %id)
BQ354300 head_neck .c 2833 to 3274 86 to 545       460/545
(84 %)
14 diff
(97.5 %id)
BQ354355 head_neck .c 2833 to 3274 86 to 545       460/545
(84 %)
14 diff
(97.5 %id)
BF736660 bladder_tumor .c 2882 to 3397 516 to 3   tiling clone, Submitted on the opposite strand 514/516
(99 %)
8 diff
(98.5 %id)
CX752951 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 3215 to 3856 661 to 26       636/806
(78 %)
0 diff
(100 %id)
BQ669554 epidermoid carcinoma, cell line, salivary gland .c 3247 to 3690 1 to 444   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 444/444
(100 %)
0 diff
(100 %id)
AI302363 2 pooled tumors (clear cell type), Kidney .c 3257 to 3718 473 to 12   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 462/462
(100 %)
2 diff
(99.6 %id)
AI161218 brain, glioblastoma (pooled) .c 3264 to 3708 445 to 1       445/445
(100 %)
0 diff
(100 %id)
AI360932 brain, glioblastoma (pooled) .c 3276 to 3690 433 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 415/415
(100 %)
0 diff
(100 %id)
N57695 liver and spleen .c 3281 to 3692 419 to 1       419/425
(98 %)
10 diff
(97.7 %id)
BE819652 breast_normal .c 3284 to 3442 1 to 158       158/158
(100 %)
4 diff
(97.5 %id)
BP418020 small intestine .c 3290 to 3738 1 to 449     Submitted on the opposite strand 449/450
(99 %)
1 diff
(99.8 %id)
AW129121 brain, tumor, 5 pooled (see description) .c 3295 to 3404 109 to 1       109/109
(100 %)
2 diff
(98.2 %id)
AA508689 colon .c 3310 to 3690 398 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 380/380
(100 %)
1 diff
(99.8 %id)
AA169798   .c 3315 to 3860 548 to 8       541/548
(98 %)
0 diff
(100 %id)
BX119599 breast .c 3322 to 3732 412 to 1       412/412
(100 %)
5 diff
(98.8 %id)
CA309277 Alveolar Macrophage, lung .c 3366 to 3750 403 to 19   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 385/385
(100 %)
1 diff
(99.8 %id)
BU736294 eye, fetal eyes .c 3377 to 3708 332 to 1       332/332
(100 %)
0 diff
(100 %id)
DW415411 Liver .c 3382 to 3678 17 to 313       297/313
(94 %)
6 diff
(98.1 %id)
AA814164 2 pooled tumors (clear cell type), Kidney .c 3421 to 3860 445 to 6       440/445
(98 %)
0 diff
(100 %id)
DB563469 hypothalamus .c 3438 to 3856 1 to 420     Submitted on the opposite strand 420/420
(100 %)
3 diff
(99.3 %id)
AW872800 squamous cell carcinoma, tongue .c 3454 to 3860 407 to 1       407/407
(100 %)
0 diff
(100 %id)
CX753070 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .c 3483 to 4199 769 to 53   tiling clone, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 717/717
(100 %)
0 diff
(100 %id)
BF434841 Kidney .c 3487 to 3858 377 to 6       372/377
(98 %)
0 diff
(100 %id)
BG617634 Liver .c 3567 to 4293 1 to 727       727/727
(100 %)
14 diff
(98.1 %id)
H39117 brain .c 3612 to 4199 591 to 1       591/608
(97 %)
35 diff
(94.3 %id)
CB047525 Kidney .c 3646 to 4150 10 to 514       505/516
(97 %)
2 diff
(99.7 %id)
CK904003 Islets of Langerhans, Pancreas .c 3730 to 4310 581 to 1       581/581
(100 %)
0 diff
(100 %id)
AI334305 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3744 to 4195 455 to 4       452/455
(99 %)
0 diff
(100 %id)
DB551156 hippocampus .c 3751 to 4235 1 to 485     Submitted on the opposite strand 485/485
(100 %)
1 diff
(99.8 %id)
AW051729 Kidney .c 3759 to 4236 478 to 1       478/478
(100 %)
3 diff
(99.4 %id)
BM052802 Islets of Langerhans, Pancreas .c 3807 to 4310 504 to 1       504/504
(100 %)
0 diff
(100 %id)
DB533388 hippocampus .c 3819 to 4235 1 to 417     Submitted on the opposite strand 417/417
(100 %)
1 diff
(99.8 %id)
BE464258 Kidney .c 3828 to 4255 430 to 3       428/430
(99 %)
0 diff
(100 %id)
AI651324 Kidney .c 3832 to 4316 485 to 1       485/485
(100 %)
1 diff
(99.8 %id)
AI082317 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3859 to 4310 453 to 2       452/453
(99 %)
0 diff
(100 %id)
AA424806.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3877 to 4260 399 to 16   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base), also hits gene SNCB 384/384
(100 %)
4 diff
(99.0 %id)
BM476445 lymph, lymphoma, cell line .c 3933 to 4260 1 to 328   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 328/328
(100 %)
0 diff
(100 %id)
BF197444 Kidney .c 4000 to 4312 319 to 6       314/319
(98 %)
0 diff
(100 %id)
Z41013 brain, total brain .c 4029 to 4316 288 to 1       288/288
(100 %)
0 diff
(100 %id)
AI565320 Kidney .c 4064 to 4199 150 to 15   AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 136/136
(100 %)
0 diff
(100 %id)
DB573211 hypothalamus .c 4124 to 4597 474 to 1       474/476
(99 %)
0 diff
(100 %id)
DB574681 hypothalamus .c 4124 to 4565 442 to 1       442/444
(99 %)
0 diff
(100 %id)
DB577093 hypothalamus .c 4124 to 4615 492 to 1   tiling clone,   492/494
(99 %)
0 diff
(100 %id)
DB577904 hypothalamus .c 4124 to 4599 476 to 1       476/478
(99 %)
1 diff
(99.8 %id)
D53204   .c 4326 to 4606 1 to 288       288/288
(100 %)
9 diff
(96.9 %id)
D53220   .c 4326 to 4661 1 to 336       336/336
(100 %)
6 diff
(98.3 %id)
D53260   .c 4326 to 4697 1 to 369       369/369
(100 %)
8 diff
(97.9 %id)
D54389   .c 4326 to 4768 1 to 437       437/437
(100 %)
14 diff
(96.8 %id)
D55572   .c 4326 to 4531 1 to 206       206/206
(100 %)
2 diff
(99.1 %id)
CN275475 embryonic stem cells, cell lines H1, H7, andH9 .c 4328 to 4765 7 to 444       438/444
(98 %)
6 diff
(98.7 %id)
DB538660 hippocampus .c 4328 to 4542 216 to 1       216/221
(97 %)
7 diff
(96.9 %id)
DB539868 hippocampus .c 4328 to 4748 420 to 3       418/433
(96 %)
0 diff
(100 %id)
DB567863 hypothalamus .c 4328 to 4776 451 to 3       449/468
(95 %)
0 diff
(100 %id)
AI249581 borderline ovarian carcinoma, ovary .c 4328 to 4572 251 to 6       246/286
(86 %)
0 diff
(100 %id)
AI344893 early stage papillary serous carcinoma, ovary .c 4328 to 4572 278 to 32       247/308
(80 %)
0 diff
(100 %id)
AI340611 bone marrow, stem cell 34+/38+ .c 4328 to 4572 251 to 6       246/287
(85 %)
0 diff
(100 %id)
AI379814 bronchioalveolar carcinoma, lung .c 4328 to 4572 251 to 6       246/281
(87 %)
0 diff
(100 %id)
AI590443 bone marrow, CD34+, T negative, patient with chronicmyelogenous leukemia .c 4328 to 4572 261 to 17       245/297
(82 %)
0 diff
(100 %id)
AW074919 bone marrow, stem cell 34+/38+ .c 4328 to 4572 251 to 6       246/284
(86 %)
0 diff
(100 %id)
BY999795   .c 4329 to 4514 186 to 1       186/186
(100 %)
0 diff
(100 %id)
D45603 lung .c 4329 to 4514 186 to 1       186/186
(100 %)
0 diff
(100 %id)
EC527046 Prostate .c 4331 to 4434 1 to 103       103/103
(100 %)
3 diff
(97.1 %id)
AA649117 Ewing's sarcoma .c 4331 to 4622 1 to 292       292/298
(97 %)
5 diff
(98.4 %id)
DB528333 hippocampus .c 4332 to 4780 449 to 1       449/449
(100 %)
2 diff
(99.6 %id)
DB528723 hippocampus .c 4332 to 4784 452 to 1       452/452
(100 %)
7 diff
(98.5 %id)
DB528992 hippocampus .c 4332 to 4786 460 to 8       453/460
(98 %)
0 diff
(100 %id)
DB530377 hippocampus .c 4332 to 4693 361 to 1       361/362
(99 %)
1 diff
(99.8 %id)
DB531013 hippocampus .c 4332 to 4776 448 to 2       447/448
(99 %)
0 diff
(100 %id)
DB532798 hippocampus .c 4332 to 4653 322 to 1       322/322
(100 %)
4 diff
(98.8 %id)
DB533253 hippocampus .c 4332 to 4674 346 to 3       344/346
(99 %)
0 diff
(100 %id)
DB533589 hippocampus .c 4332 to 4752 422 to 1       422/422
(100 %)
4 diff
(99.1 %id)
DB533790 hippocampus .c 4332 to 4737 407 to 2       406/407
(99 %)
0 diff
(100 %id)
DB534790 hippocampus .c 4332 to 4746 415 to 1       415/415
(100 %)
1 diff
(99.8 %id)
DB535939 hippocampus .c 4332 to 4773 441 to 1       441/441
(100 %)
4 diff
(99.1 %id)
DB536367 hippocampus .c 4332 to 4795 463 to 1       463/463
(100 %)
3 diff
(99.4 %id)
DB537037 hippocampus .c 4332 to 4765 434 to 1       434/434
(100 %)
0 diff
(100 %id)
DB537957 hippocampus .c 4332 to 4523 192 to 1       192/192
(100 %)
9 diff
(95.4 %id)
DB538317 hippocampus .c 4332 to 4766 436 to 1       436/436
(100 %)
5 diff
(98.9 %id)
DB540744 hippocampus .c 4332 to 4817 486 to 1       486/486
(100 %)
4 diff
(99.2 %id)
DB543654 hippocampus .c 4332 to 4796 465 to 1       465/465
(100 %)
0 diff
(100 %id)
DB545947 hippocampus .c 4332 to 4773 442 to 1       442/442
(100 %)
0 diff
(100 %id)
DB547278 hippocampus .c 4332 to 4752 421 to 1       421/421
(100 %)
0 diff
(100 %id)
DB547959 hippocampus .c 4332 to 4801 470 to 1       470/470
(100 %)
0 diff
(100 %id)
DB548000 hippocampus .c 4332 to 4729 399 to 1       399/399
(100 %)
5 diff
(98.8 %id)
DB550035 hippocampus .c 4332 to 4808 477 to 1       477/477
(100 %)
1 diff
(99.8 %id)
DB550102 hippocampus .c 4332 to 4813 482 to 1       482/482
(100 %)
0 diff
(100 %id)
DB550705 hippocampus .c 4332 to 4819 488 to 1       488/488
(100 %)
1 diff
(99.8 %id)
DB552570 hippocampus .c 4332 to 4800 471 to 3       469/471
(99 %)
0 diff
(100 %id)
DB553243 hypothalamus .c 4332 to 4759 427 to 1       427/427
(100 %)
1 diff
(99.8 %id)
DB553643 hypothalamus .c 4332 to 4764 432 to 1       432/432
(100 %)
2 diff
(99.6 %id)
DB554076 hypothalamus .c 4332 to 4746 418 to 4       415/418
(99 %)
0 diff
(100 %id)
DB554105 hypothalamus .c 4332 to 4740 411 to 1       411/411
(100 %)
5 diff
(98.8 %id)
DB554488 hypothalamus .c 4332 to 4646 397 to 83       315/397
(79 %)
0 diff
(100 %id)
DB554492 hypothalamus .c 4332 to 4712 396 to 1       396/396
(100 %)
15 diff
(96.3 %id)
DB554506 hypothalamus .c 4332 to 4777 444 to 1       444/444
(100 %)
8 diff
(98.2 %id)
DB555719 hypothalamus .c 4332 to 4667 348 to 6       343/348
(98 %)
0 diff
(100 %id)
DB555741 hypothalamus .c 4332 to 4769 439 to 1       439/439
(100 %)
1 diff
(99.8 %id)
DB556352 hypothalamus .c 4332 to 4749 419 to 1       419/419
(100 %)
11 diff
(97.4 %id)
DB556619 hypothalamus .c 4332 to 4753 422 to 1       422/422
(100 %)
1 diff
(99.8 %id)
DB556930 hypothalamus .c 4332 to 4773 442 to 1       442/442
(100 %)
3 diff
(99.4 %id)
DB557293 hypothalamus .c 4332 to 4764 432 to 1       432/432
(100 %)
7 diff
(98.4 %id)
DB557681 hypothalamus .c 4332 to 4685 360 to 11       350/360
(97 %)
0 diff
(100 %id)
DB560650 hypothalamus .c 4332 to 4760 428 to 1       428/428
(100 %)
1 diff
(99.8 %id)
DB561067 hypothalamus .c 4332 to 4541 212 to 1       212/213
(99 %)
11 diff
(94.9 %id)
DB562249 hypothalamus .c 4332 to 4773 439 to 1       439/439
(100 %)
4 diff
(99.1 %id)
DB562811 hypothalamus .c 4332 to 4746 418 to 3       416/418
(99 %)
0 diff
(100 %id)
DB564917 hypothalamus .c 4332 to 4787 456 to 1       456/456
(100 %)
0 diff
(100 %id)
DB565315 hypothalamus .c 4332 to 4777 446 to 1       446/446
(100 %)
2 diff
(99.6 %id)
DB565377 hypothalamus .c 4332 to 4789 458 to 1       458/458
(100 %)
2 diff
(99.6 %id)
DB565390 hypothalamus .c 4332 to 4783 452 to 1       452/452
(100 %)
1 diff
(99.8 %id)
DB565837 hypothalamus .c 4332 to 4794 463 to 1       463/463
(100 %)
1 diff
(99.8 %id)
DB565886 hypothalamus .c 4332 to 4798 467 to 1       467/467
(100 %)
1 diff
(99.8 %id)
DB566081 hypothalamus .c 4332 to 4796 464 to 1       464/464
(100 %)
3 diff
(99.4 %id)
DB566222 hypothalamus .c 4332 to 4795 464 to 1       464/464
(100 %)
0 diff
(100 %id)
DB566495 hypothalamus .c 4332 to 4781 450 to 1       450/450
(100 %)
0 diff
(100 %id)
DB567066 hypothalamus .c 4332 to 4799 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
DB568241 hypothalamus .c 4332 to 4821 495 to 6       490/495
(98 %)
0 diff
(100 %id)
DB569365 hypothalamus .c 4332 to 4790 459 to 1       459/459
(100 %)
1 diff
(99.8 %id)
DB569539 hypothalamus .c 4332 to 4794 463 to 1       463/463
(100 %)
1 diff
(99.8 %id)
DB571161 hypothalamus .c 4332 to 4802 471 to 1       471/471
(100 %)
1 diff
(99.8 %id)
DB572528 hypothalamus .c 4332 to 4809 478 to 1       478/478
(100 %)
1 diff
(99.8 %id)
DB573161 hypothalamus .c 4332 to 4815 484 to 1       484/484
(100 %)
1 diff
(99.8 %id)
DB574518 hypothalamus .c 4332 to 4776 445 to 1       445/445
(100 %)
1 diff
(99.8 %id)
DB575278 hypothalamus .c 4332 to 4788 457 to 1       457/457
(100 %)
3 diff
(99.4 %id)
DB576959 hypothalamus .c 4332 to 4821 491 to 2       490/491
(99 %)
0 diff
(100 %id)
DB577349 hypothalamus .c 4332 to 4810 479 to 1       479/479
(100 %)
1 diff
(99.8 %id)
DB577934 hypothalamus .c 4332 to 4801 470 to 1       470/470
(100 %)
3 diff
(99.4 %id)
T32985 brain .c 4332 to 4500 1 to 169       169/169
(100 %)
0 diff
(100 %id)
DB552762 hippocampus .c 4333 to 4807 475 to 1       475/476
(99 %)
1 diff
(99.8 %id)
DB556919 hypothalamus .c 4333 to 4775 443 to 1       443/444
(99 %)
1 diff
(99.8 %id)
DB536293 hippocampus .c 4334 to 4786 453 to 3       451/453
(99 %)
0 diff
(100 %id)
DB561264 hypothalamus .c 4334 to 4760 425 to 1       425/425
(100 %)
7 diff
(98.4 %id)
DB575872 hypothalamus .c 4334 to 4814 481 to 1       481/481
(100 %)
3 diff
(99.4 %id)
BX435419 brain, fetal brain .c 4336 to 5167 1 to 839       839/895
(93 %)
37 diff
(95.9 %id)
AA722274   .c 4337 to 4863 1 to 526       526/526
(100 %)
5 diff
(99.1 %id)
AA343457 brain, frontal cortex .c 4346 to 4604 1 to 259       259/259
(100 %)
3 diff
(98.9 %id)
AA722268   .c 4356 to 4855 1 to 500       500/500
(100 %)
2 diff
(99.6 %id)
AI751796 Bone, Hip .c 4362 to 4760 8 to 406       399/406
(98 %)
6 diff
(98.6 %id)
BU556563 ovary, teratocarcinoma, cell line .c 4364 to 5210 1 to 860   tiling clone,   860/939
(91 %)
24 diff
(97.5 %id)
BF369905 placenta_normal .c 4430 to 4960 1 to 531       531/531
(100 %)
6 diff
(98.9 %id)
BF954926 nervous_normal .c 4450 to 4821 1 to 374       374/374
(100 %)
6 diff
(98.4 %id)
AI124609 brain, pooled frontal lobe .c 4854 to 5316 463 to 1       463/463
(100 %)
1 diff
(99.8 %id)
BC131577 PCR rescued clones .c 4928 to 5586 1 to 659   tiling clone,   659/669
(98 %)
6 diff
(99.2 %id)
CV366099 nervous_tumor .c 4997 to 5281 1 to 290       290/290
(100 %)
23 diff
(92.1 %id)
BF090314 nervous_normal .c 5068 to 5591 33 to 556   tiling clone,   524/558
(93 %)
5 diff
(99.2 %id)
AK297518 brain .d 1 to 1063 1 to 1063 exact     1063/1063
(100 %)
1 diff
(100.0 %id)
DC352501 brain .d 1 to 550 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
NR_026649.1   .d 1 to 1616 1 to 1616 exact RefSeq, tiling clone,   1616/1616
(100 %)
0 diff
(100 %id)
DC361488 Kidney .d 5 to 544 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
BP328057 prostata .d 11 to 592 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
CB116469 Liver .d 31 to 595 1 to 564       564/564
(100 %)
2 diff
(99.7 %id)
BP364836 lung .d 31 to 612 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA368490 subthalamic nucleus .d 32 to 600 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA378768 thalamus .d 32 to 605 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
BP296286   .d 35 to 617 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP307962 brain .d 35 to 622 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
DB005333 breast, tumor tissue .d 38 to 594 2 to 561   capped   560/560
(100 %)
4 diff
(99.3 %id)
DB187540 liver, tumor tissue .d 38 to 609 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
BP256846 Kidney .d 39 to 620 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP340449 Spleen .d 40 to 620 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
BP376230 uterus .d 42 to 617 1 to 576       576/576
(100 %)
0 diff
(100 %id)
BP275975 Kidney .d 44 to 609 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
BP277207 Kidney .d 46 to 533 1 to 488       488/582
(83 %)
10 diff
(98.3 %id)
BP275022 Kidney .d 52 to 632 1 to 583       583/583
(100 %)
11 diff
(98.2 %id)
AV695048 hepatocellular carcinoma .d 131 to 392 36 to 295       260/319
(81 %)
7 diff
(97.9 %id)
AA284792 ovarian tumor, ovary .d 143 to 558 1 to 414     Submitted on the opposite strand 414/414
(100 %)
15 diff
(96.4 %id)
AI017491 pooled .d 143 to 577 1 to 435     Submitted on the opposite strand 435/435
(100 %)
0 diff
(100 %id)
AI818871 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .d 143 to 615 1 to 473     Submitted on the opposite strand 473/473
(100 %)
0 diff
(100 %id)
CN419391 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 1 to 735 1 to 735   tiling clone,   735/735
(100 %)
6 diff
(99.2 %id)
CF128130 Chondrosarcoma Lung Metastasis cell lines, lung .e 556 to 1358 1 to 802   tiling clone,   802/802
(100 %)
8 diff
(99.1 %id)
TI_154193962   .e 556 to 1495 50 to 987   tiling clone, AAA   938/949
(98 %)
32 diff
(96.7 %id)
BG714668 brain, hypothalamus .f 1 to 696 1 to 696   tiling clone,   696/697
(99 %)
7 diff
(99.0 %id)
BC037778 Brain, hypothalamus .f 6 to 2161 6 to 2162 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/15 A in genome downstream of last aligned base) 2157/2157
(100 %)
3 diff
(99.9 %id)
DB487294 hypothalamus .f 9 to 448 1 to 441       441/441
(100 %)
2 diff
(99.6 %id)
DB492473 hypothalamus .f 9 to 477 1 to 465       465/465
(100 %)
30 diff
(93.6 %id)
NR_026648.1   .f 322 to 2165 1 to 1844 exact RefSeq, tiling clone,   1844/1844
(100 %)
0 diff
(100 %id)
DA143212 alzheimer cortex .f 353 to 916 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA823359 pericardium .f 357 to 920 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB466566 hippocampus .f 360 to 804 1 to 445       445/445
(100 %)
1 diff
(99.8 %id)
DB482292 hippocampus .f 360 to 860 1 to 501       501/501
(100 %)
0 diff
(100 %id)
BE271371 adenocarcinoma cell line, ovary .f 368 to 959 1 to 597       597/598
(99 %)
13 diff
(97.9 %id)
AI167945 pooled .f 516 to 936 1 to 421     Submitted on the opposite strand 421/421
(100 %)
0 diff
(100 %id)
R54850 breast .f 699 to 1183 1 to 488     Submitted on the opposite strand 488/488
(100 %)
17 diff
(96.6 %id)
AA910750 pooled .f 705 to 1066 12 to 373     Submitted on the opposite strand 362/373
(97 %)
7 diff
(98.2 %id)
AA421820 ovarian tumor, ovary .f 707 to 1115 14 to 423     Submitted on the opposite strand 410/423
(96 %)
6 diff
(98.6 %id)
AA973795 carcinoid, lung .f 707 to 1029 13 to 334     Submitted on the opposite strand 322/334
(96 %)
19 diff
(94.4 %id)
AA558952 breast .f 712 to 1088 21 to 396     Submitted on the opposite strand 376/396
(94 %)
6 diff
(98.5 %id)
AI418120 brain, glioblastoma (pooled) .f 720 to 1127 1 to 408     Submitted on the opposite strand 408/408
(100 %)
0 diff
(100 %id)
AI268326 carcinoid, lung .f 739 to 946 1 to 208     Submitted on the opposite strand 208/208
(100 %)
0 diff
(100 %id)
AV724733 hypothalamus .f 740 to 1131 1 to 383       383/393
(97 %)
5 diff
(98.8 %id)
AA911487 carcinoid, lung .f 757 to 1131 1 to 375     Submitted on the opposite strand 375/444
(84 %)
18 diff
(96.0 %id)
FN161244 breast carcinoma .f 1043 to 1129 84 to 1     Submitted on the opposite strand 84/84
(100 %)
3 diff
(96.5 %id)
R09405 liver and spleen .f 1448 to 1663 7 to 223   fully sequenced,   217/223
(97 %)
7 diff
(96.9 %id)
CK904004 Islets of Langerhans, Pancreas .f 1475 to 2057 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
BM053110 Islets of Langerhans, Pancreas .f 1491 to 1986 1 to 496       496/496
(100 %)
2 diff
(99.6 %id)
R09406 liver and spleen .f 1633 to 2007 384 to 1   fully sequenced,   384/384
(100 %)
9 diff
(97.7 %id)
BU902205 leiomyosarcoma, uterus .g 1 to 975 1 to 972 G153A W154G N155M A156Q M157W ... tiling clone,   972/1152
(84 %)
16 diff
(98.7 %id)
AK124783 brain .h-u 1 to 4601 2 to 4603 exact tiling clone, available from FLJ,   4603/4603
(100 %)
12 diff
(99.8 %id)
DA216932 brain .h-u 1 to 541 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DB133000 thymus .h-u 386 to 784 2 to 400   capped   399/399
(100 %)
0 diff
(100 %id)
DB152187 thymus .h-u 386 to 927 2 to 543   capped   542/543
(99 %)
2 diff
(99.7 %id)
DA211721 brain .h-u 845 to 1402 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DB275156 uterus .h-u 1435 to 2012 2 to 579   tiling clone, capped   578/578
(100 %)
1 diff
(99.9 %id)
AY927635   .h-u 1960 to 4147 1 to 2188   tiling clone,   2188/2188
(100 %)
11 diff
(99.5 %id)
AY927636   .h-u 1961 to 4147 2187 to 1     Submitted on the opposite strand 2187/2188
(99 %)
10 diff
(99.6 %id)
BF338757 brain, glioblastoma with EGFR amplification .h-u 2010 to 2771 1 to 751       751/965
(77 %)
19 diff
(98.1 %id)
H38588 eye, retina .h-u 2118 to 2459 1 to 345       345/345
(100 %)
4 diff
(98.9 %id)
DB075011 testis .h-u 2140 to 2682 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
AL110465 uterus .h-u 2678 to 3073 1 to 395       395/395
(100 %)
3 diff
(99.3 %id)
BI044881 ovary .h-u 3461 to 3773 21 to 333       313/333
(93 %)
6 diff
(98.2 %id)
DB304767 brain .h-u 4064 to 4601 538 to 1       538/538
(100 %)
2 diff
(99.7 %id)
DB352124 uterus .h-u 4422 to 4970 549 to 1       549/557
(98 %)
0 diff
(100 %id)
DB340488 testis .h-u 4445 to 4988 544 to 1   tiling clone,   544/544
(100 %)
0 diff
(100 %id)
DB304442 brain .h-u 4451 to 4988 538 to 1       538/538
(100 %)
1 diff
(99.9 %id)
H38832 eye, retina .h-u 4868 to 5124 259 to 1   tiling clone,   259/259
(100 %)
3 diff
(98.9 %id)
BI059481 uterus_tumor .i-u 1 to 325 326 to 2   tiling clone,   325/335
(97 %)
0 diff
(100 %id)
BI061855 uterus_tumor .i-u 1 to 325 326 to 2       325/335
(97 %)
0 diff
(100 %id)
CN333659 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i-u 104 to 824 1 to 720   tiling clone,   720/720
(100 %)
4 diff
(99.5 %id)
CB164108 Liver .i-u 601 to 933 36 to 368   tiling clone,   333/368
(90 %)
6 diff
(98.4 %id)
BF884236 lung_tumor .i-u 1747 to 2149 407 to 1   tiling clone, Submitted on the opposite strand 407/407
(100 %)
7 diff
(98.3 %id)
BJ996486 hepatoblastoma .i-u 1751 to 2241 1 to 491   tiling clone,   491/491
(100 %)
1 diff
(99.8 %id)
DA381478 thalamus .j 1 to 606 2 to 607 exact tiling clone, capped   606/606
(100 %)
0 diff
(100 %id)
AW780269 colon, moderately-differentiated adenocarcinoma .k 1 to 576 575 to 1 exact tiling clone,   575/575
(100 %)
2 diff
(99.7 %id)
BF328656 breast_normal .l-u 1 to 344 1 to 344 V5G M28R tiling clone,   344/348
(98 %)
8 diff
(97.8 %id)
BF328661 breast_normal .l-u 1 to 333 1 to 333 V5G tiling clone,   333/333
(100 %)
2 diff
(99.4 %id)
BF328631 breast_normal .l-u 3 to 268 265 to 2   tiling clone,   264/265
(99 %)
0 diff
(100 %id)
CN333656 embryonic stem cells, cell lines H1, H7, andH9 Gene BPHL, variant not shown         This clone was ignored    
FN140588 breast carcinoma Gene BPHL, variant not shown         This clone was ignored    
AV685026 hepatocellular carcinoma Gene BPHL, variant not shown         Suspected internal deletion, this clone was ignored    
AV686154 hepatocellular carcinoma Gene BPHL, variant not shown         Suspected internal deletion, this clone was ignored    
AV686776 hepatocellular carcinoma Gene BPHL, variant not shown         Suspected internal deletion, this clone was ignored    
AV692189 hepatocellular carcinoma Gene BPHL, variant not shown         Suspected internal deletion, this clone was ignored    
BJ996061 hepatoblastoma Gene BPHL, variant not shown         Suspected internal deletion, this clone was ignored    
BJ996062 hepatoblastoma Gene BPHL, variant not shown         Suspected internal deletion, this clone was ignored    
BG325068 Kidney, renal cell adenocarcinoma Gene BPHL, variant not shown         Suspected internal deletion, this clone was ignored    
BQ446735 Knee, Osteoarthritic Cartilage Gene BPHL, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i-u, .j, .k, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC