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Gene BHLHE22TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
52 supporting clones for gene BHLHE22 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB636525 hippocampus .a-u 1 to 731 1 to 731   tiling clone,   731/731
(100 %)
1 diff
(99.9 %id)
AI867692 pooled germ cell tumors .a-u 274 to 625 352 to 1       352/352
(100 %)
1 diff
(99.8 %id)
AI968349 pooled germ cell tumors .a-u 290 to 657 368 to 1       368/368
(100 %)
2 diff
(99.5 %id)
AA927689 pooled germ cell tumors .a-u 292 to 657 366 to 1       366/366
(100 %)
3 diff
(99.2 %id)
NM_152414.3   .a-u 293 to 3660 1 to 3368 exact RefSeq, AAA   3368/3368
(100 %)
0 diff
(100 %id)
AK293979 cerebellum .a-u 402 to 2021 1 to 1629 S28A L62Q V98G G99V V100G ... tiling clone,   1629/1629
(100 %)
7 diff
(99.6 %id)
DA116963 cerebellum .a-u 403 to 941 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
U80755 brain, soft tissue .a-u 650 to 2405 1 to 1763 S28A G177W A178R K179E A180G ... tiling clone,   1763/1768
(99 %)
13 diff
(99.3 %id)
AU077125   .a-u 671 to 876 1 to 206       206/206
(100 %)
2 diff
(99.1 %id)
BP380465   .a-u 672 to 1067 1 to 396       396/400
(99 %)
5 diff
(98.8 %id)
AI651258 pooled germ cell tumors .a-u 874 to 1361 1 to 488   tiling clone, Submitted on the opposite strand 488/488
(100 %)
0 diff
(100 %id)
AW613932 pooled germ cell tumors .a-u 881 to 1230 1 to 352     Submitted on the opposite strand 352/352
(100 %)
3 diff
(99.2 %id)
AW615103 pooled germ cell tumors .a-u 881 to 1231 1 to 354     Submitted on the opposite strand 354/354
(100 %)
3 diff
(99.2 %id)
DR000565 fetal brain .a-u 1110 to 1794 1 to 686       686/686
(100 %)
6 diff
(99.2 %id)
AK091333 brain .a-u 1199 to 3664 1 to 2466   tiling clone, available from FLJ,   2466/2466
(100 %)
3 diff
(99.9 %id)
DA485284 brain .a-u 1200 to 1773 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA486929 brain .a-u 1585 to 2089 2 to 508   capped   507/507
(100 %)
2 diff
(99.7 %id)
DA528061 brain .a-u 1587 to 2193 2 to 608   tiling clone, capped   607/607
(100 %)
1 diff
(99.9 %id)
BE799850 lung, small cell carcinoma .a-u 1647 to 2061 12 to 429       418/534
(78 %)
8 diff
(98.6 %id)
BI552771 brain, hippocampus .a-u 2414 to 3219 1 to 811   available from MGC,   811/812
(99 %)
11 diff
(98.7 %id)
TI_44170573   .a-u 2417 to 3219 124 to 931       808/932
(86 %)
12 diff
(98.8 %id)
BC045748 Brain, hippocampus .a-u 2419 to 3660 1 to 1242   available from MGC, AAA   1242/1242
(100 %)
3 diff
(99.8 %id)
CA392856 eye, RPE/choroid .a-u 2432 to 2790 1 to 359       359/359
(100 %)
0 diff
(100 %id)
BX116391 placenta .a-u 2457 to 2953 1 to 497       497/497
(100 %)
0 diff
(100 %id)
D81246 brain .a-u 2514 to 2827 1 to 314       314/314
(100 %)
2 diff
(99.4 %id)
FN087480 breast carcinoma .a-u 2564 to 2669 104 to 1     Submitted on the opposite strand 104/104
(100 %)
2 diff
(98.1 %id)
BF589572 Prostate .a-u 2601 to 3070 1 to 470     Submitted on the opposite strand 470/470
(100 %)
1 diff
(99.8 %id)
AW235939 Kidney .a-u 2645 to 3029 392 to 3       390/426
(91 %)
0 diff
(100 %id)
BF062471 colon, colon tumor, RER+ .a-u 2768 to 3303 538 to 3       536/538
(99 %)
0 diff
(100 %id)
AI380496 B-cell, chronic lymphotic leukemia .a-u 2815 to 3306 492 to 1       492/492
(100 %)
0 diff
(100 %id)
AI334339 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 2903 to 3339 438 to 2       437/438
(99 %)
0 diff
(100 %id)
AI278054 placenta .a-u 2905 to 3331 437 to 11   AAA   427/427
(100 %)
1 diff
(99.8 %id)
AL134707 brain .a-u 2936 to 3527 1 to 592       592/592
(100 %)
0 diff
(100 %id)
AA453903.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 3039 to 3457 1 to 420     also hits gene SEMA6A 420/420
(100 %)
4 diff
(99.1 %id)
DB315152 brain .a-u 3130 to 3664 536 to 1       536/536
(100 %)
1 diff
(99.9 %id)
AI498361 Kidney .a-u 3165 to 3664 500 to 1   tiling clone,   500/500
(100 %)
0 diff
(100 %id)
AW665919 pooled .a-u 3186 to 3668 494 to 12   AAA   483/483
(100 %)
0 diff
(100 %id)
AI804341 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 3195 to 3660 466 to 1       466/466
(100 %)
0 diff
(100 %id)
D53111   .a-u 3207 to 3660 449 to 1       449/449
(100 %)
5 diff
(98.9 %id)
AW206610   .a-u 3215 to 3669 471 to 18   AAA   454/454
(100 %)
1 diff
(99.8 %id)
AW594227 pooled germ cell tumors .a-u 3233 to 3668 435 to 1       435/435
(100 %)
1 diff
(99.8 %id)
M78885   .a-u 3268 to 3570 1 to 303       303/303
(100 %)
0 diff
(100 %id)
BM689628 eye, Retina Foveal and Macular .a-u 3313 to 3660 1 to 348   fully sequenced, AAA   348/348
(100 %)
0 diff
(100 %id)
AA453786.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a-u 3330 to 3662 333 to 1     also hits gene SEMA6A 333/333
(100 %)
0 diff
(100 %id)
AA635141 lung, lung carcinoma .a-u 3335 to 3664 330 to 1       330/330
(100 %)
0 diff
(100 %id)
D54178   .a-u 3390 to 3660 270 to 1       270/270
(100 %)
1 diff
(99.7 %id)
BM661603 eye, Retina Foveal and Macular .a-u 3451 to 3629 179 to 1   fully sequenced,   179/179
(100 %)
0 diff
(100 %id)
AI917093 pooled germ cell tumors .a-u 3514 to 3664 155 to 5       151/155
(97 %)
0 diff
(100 %id)
D60373   Gene BHLHE22, variant not shown         This clone was ignored    
D53224   Gene BHLHE22, variant not shown         This clone was ignored    
D60993   Gene BHLHE22, variant not shown         This clone was ignored    
DB546126 hippocampus Gene BHLHE22, variant not shown         Submitted on the opposite strand    
BC033056 Brain, hippocampus Gene BHLHE22, variant not shown       available from MGC, AAA This clone was ignored    
BI553850 brain, hippocampus Gene BHLHE22, variant not shown       available from MGC, This clone was ignored    
TI_44168198   Gene BHLHE22, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes C