cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
AA757195 | .b | 8369 to 8779 | 411 to 1 | tiling clone, | 411/411 (100 %) | 0 diff (100 %id) | |||
AB126828 | prostate cancer | .a | 1 to 8763 | 1 to 8763 | exact | tiling clone, | 8763/8763 (100 %) | 0 diff (100 %id) | |
AB126829 | prostate cancer | .b | 1 to 8692 | 1 to 8692 | exact | tiling clone, | 8692/8692 (100 %) | 0 diff (100 %id) | |
AK092951 | Spleen | .b | 6313 to 8775 | 1 to 2463 | available from FLJ, | 2463/2465 (99 %) | 3 diff (99.9 %id) | ||
AW869174 | stomach_normal | .b | 6392 to 6534 | 144 to 1 | 144/169 (85 %) | 10 diff (94.1 %id) | |||
AW975510 | .b | 8193 to 8691 | 499 to 1 | Submitted on the opposite strand | 499/499 (100 %) | 10 diff (98.0 %id) | |||
AW976059 | .c-u | 397 to 1035 | 639 to 1 | tiling clone, | Submitted on the opposite strand | 639/639 (100 %) | 2 diff (99.7 %id) | ||
T25337 | .c-u | 2090 to 2379 | 292 to 1 | V7G L8A L9F E10W I11R ... | tiling clone, | 292/292 (100 %) | 6 diff (98.0 %id) | ||
T25372 | .c-u | 706 to 828 | 1 to 123 | 123/123 (100 %) | 0 diff (100 %id) | ||||
DA333612 | hippocampus | .b | 5136 to 5679 | 2 to 545 | capped | 544/544 (100 %) | 0 diff (100 %id) | ||
DA391796 | thalamus | .b | 5718 to 6292 | 2 to 575 | capped | 574/574 (100 %) | 3 diff (99.5 %id) | ||
DB311815 | thalamus | .b | 8373 to 8701 | 332 to 1 | 332/332 (100 %) | 5 diff (98.5 %id) | |||
BX100140 | .b | 7750 to 8274 | 1 to 525 | 525/525 (100 %) | 0 diff (100 %id) | ||||
BX451370 | neuroblastoma | .b | 7263 to 8162 | 1 to 897 | 897/897 (100 %) | 7 diff (99.3 %id) | |||
CR624996 | Neuroblastoma Cot 10-normalized | .b | 7743 to 8679 | 1 to 937 | 937/937 (100 %) | 0 diff (100 %id) | |||
AL520662 | brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized | .b | 7743 to 8640 | 1 to 898 | 898/898 (100 %) | 1 diff (99.9 %id) | |||
BX332709 | Neuroblastoma Cot 25-normalized | .b | 7634 to 8665 | 1033 to 14 | 1020/1037 (98 %) | 0 diff (100 %id) | |||
BX332710 | Neuroblastoma Cot 25-normalized | .b | 6488 to 7453 | 1 to 964 | 964/964 (100 %) | 2 diff (99.8 %id) | |||
BX956175 | .b | 6285 to 6729 | 1 to 445 | 445/445 (100 %) | 0 diff (100 %id) | ||||
DN831756 | pooled | .b | 1465 to 1978 | 513 to 1 | Submitted on the opposite strand | 513/579 (88 %) | 3 diff (99.5 %id) | ||
DN831757 | pooled | .b | 1517 to 2016 | 1 to 500 | 500/500 (100 %) | 4 diff (99.2 %id) | |||
AA283719 | germinal center B cell | .b | 1044 to 1557 | 1 to 514 | Submitted on the opposite strand | 515/514 (100 %) | 10 diff (98.1 %id) | ||
AA290921 | germinal center B cell | .c-u | 164 to 695 | 532 to 1 | Submitted on the opposite strand | 532/532 (100 %) | 1 diff (99.9 %id) | ||
AA808770 | germinal center B cell | .b | 8188 to 8464 | 277 to 1 | 277/277 (100 %) | 2 diff (99.3 %id) | |||
AA810297 | germinal center B cell | .c-u | 639 to 1045 | 407 to 1 | 407/407 (100 %) | 1 diff (99.8 %id) | |||
AA714025 | germinal center B cell | .c-u | 787 to 1019 | 233 to 1 | 233/233 (100 %) | 0 diff (100 %id) | |||
AA743348 | germinal center B cell | .b | 8282 to 8692 | 421 to 11 | AAA | 411/411 (100 %) | 4 diff (99.1 %id) | ||
AA814822 | germinal center B cell | .b | 1078 to 1480 | 1 to 403 | Submitted on the opposite strand | 403/403 (100 %) | 2 diff (99.6 %id) | ||
AA768793 | germinal center B cell | .b | 8238 to 8692 | 465 to 11 | AAA | 455/455 (100 %) | 1 diff (99.8 %id) | ||
AA768794 | germinal center B cell | .b | 1119 to 1367 | 1 to 249 | Submitted on the opposite strand | 249/249 (100 %) | 0 diff (100 %id) | ||
AA805946 | germinal center B cell | .b | 8356 to 8636 | 281 to 1 | 281/281 (100 %) | 1 diff (99.7 %id) | |||
AA833830 | germinal center B cell | .b | 8226 to 8692 | 479 to 13 | AAA | 467/467 (100 %) | 0 diff (100 %id) | ||
AA861697 | .b | 8445 to 8779 | 337 to 2 | 336/337 (99 %) | 0 diff (100 %id) | ||||
AA905577 | pooled | .b | 1119 to 1367 | 1 to 249 | Submitted on the opposite strand | 249/249 (100 %) | 0 diff (100 %id) | ||
AA928113 | pooled | .b | 8313 to 8692 | 401 to 22 | AAA | 380/380 (100 %) | 0 diff (100 %id) | ||
AA918181 | pooled | .b | 1119 to 1389 | 1 to 270 | Submitted on the opposite strand | 270/270 (100 %) | 3 diff (98.9 %id) | ||
AI028544 | .b | 8332 to 8694 | 364 to 2 | 363/364 (99 %) | 0 diff (100 %id) | ||||
AI032470 | liver and spleen | .b | 8394 to 8703 | 310 to 1 | 310/310 (100 %) | 1 diff (99.7 %id) | |||
AI400798 | B-cell, chronic lymphotic leukemia | .b | 1035 to 1518 | 1 to 484 | Submitted on the opposite strand | 484/484 (100 %) | 0 diff (100 %id) | ||
AI659982 | thymus, pooled | .b | 1035 to 1510 | 1 to 476 | Submitted on the opposite strand | 476/476 (100 %) | 2 diff (99.6 %id) | ||
AI970305 | lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) | .b | 1061 to 1596 | 1 to 537 | Submitted on the opposite strand | 537/537 (100 %) | 15 diff (97.3 %id) | ||
AW273930 | pooled | .b | 8461 to 8692 | 232 to 1 | 232/232 (100 %) | 1 diff (99.6 %id) | |||
AW468921 | pooled | .b | 8260 to 8694 | 436 to 2 | 435/436 (99 %) | 0 diff (100 %id) | |||
BF510596 | .b | 1011 to 1511 | 1 to 501 | Submitted on the opposite strand | 501/501 (100 %) | 0 diff (100 %id) | |||
CF134945 | CNCAP(3)T-225 cell line, Prostate | .c-u | 918 to 1421 | 1 to 504 | 504/504 (100 %) | 5 diff (99.1 %id) | |||
BF242359 | bone marrow, from acute myelogenous leukemia | .b | 7468 to 8100 | 1 to 624 | 624/810 (77 %) | 54 diff (93.4 %id) | |||
BG110072 | Bone, osteosarcoma, cell line | .b | 7353 to 7954 | 1 to 602 | 602/919 (65 %) | 4 diff (99.6 %id) | |||
BG113872 | Bone, osteosarcoma, cell line | .c-u | 394 to 1082 | 1 to 690 | 690/932 (74 %) | 14 diff (98.5 %id) | |||
BG113327 | Bone, osteosarcoma, cell line | .b | 6694 to 7472 | 1 to 774 | 774/952 (81 %) | 35 diff (96.4 %id) | |||
BG180211 | adenocarcinoma, cell line, Prostate | .b | 7014 to 7717 | 1 to 707 | 707/957 (73 %) | 18 diff (98.2 %id) | |||
BM467631 | lymph, lymphoma, cell line | .b | 3223 to 4147 | 25 to 959 | 935/1124 (83 %) | 7 diff (99.4 %id) | |||
CD358565 | testis | .b | 4894 to 5700 | 1 to 819 | 819/877 (93 %) | 25 diff (97.2 %id) | |||
DA666416 | .b | 5889 to 6446 | 2 to 559 | capped | 558/558 (100 %) | 0 diff (100 %id) | |||
NM_207406.3 | .a | 1 to 8850 | 1 to 8850 | exact | RefSeq, | 8850/8850 (100 %) | 0 diff (100 %id) | ||
NM_001159547.1 | .b | 1 to 8779 | 1 to 8779 | exact | RefSeq, | 8779/8779 (100 %) | 0 diff (100 %id) | ||
DA867804 | Prostate | .c-u | 1 to 548 | 2 to 549 | tiling clone, to resequence, capped | 548/548 (100 %) | 0 diff (100 %id) | ||
DB329723 | Prostate | .c-u | 1970 to 2371 | 402 to 1 | exact | tiling clone, to resequence, | 402/402 (100 %) | 2 diff (99.6 %id) | |
DA938458 | Spleen | .b | 6314 to 6916 | 2 to 604 | capped | 603/603 (100 %) | 0 diff (100 %id) | ||
DB333004 | Spleen | .b | 8244 to 8775 | 534 to 2 | 533/534 (99 %) | 0 diff (100 %id) | |||
DB097050 | testis | .b | 5057 to 5628 | 2 to 575 | capped | 574/574 (100 %) | 5 diff (99.2 %id) | ||
DB155972 | thymus | .b | 5020 to 5613 | 2 to 595 | capped | 594/594 (100 %) | 0 diff (100 %id) | ||
DB346489 | thymus | .b | 7896 to 8428 | 533 to 1 | 533/533 (100 %) | 0 diff (100 %id) | |||
TI_154163076 | .c-u | 925 to 1642 | 80 to 800 | tiling clone, | 721/721 (100 %) | 17 diff (97.7 %id) | |||
TI_813709223 | .b | 1696 to 1992 | 302 to 8 | fully sequenced, | 295/302 (97 %) | 0 diff (100 %id) | |||
TI_813709224 | .b | 1489 to 2026 | 1 to 538 | fully sequenced, AAA | 538/538 (100 %) | 12 diff (97.8 %id) | |||
AK125953 | testis | .c-u | 1 to 548 | 2 to 549 | tiling clone, available from FLJ, | Suspected internal deletion, this clone was ignored | 548/548 (100 %) | 0 diff (100 %id) | |
BC128592 | PCR rescued clones, C list | .c-u | 1970 to 2371 | 402 to 1 | tiling clone, | Suspected internal deletion, this clone was ignored | 402/402 (100 %) | 2 diff (99.6 %id) | |
BC128593 | PCR rescued clones, C list | .b | 6314 to 6916 | 2 to 604 | Suspected internal deletion, this clone was ignored | 603/603 (100 %) | 0 diff (100 %id) | ||
DB073611 | testis | .b | 8244 to 8775 | 534 to 2 | capped | Suspected internal deletion, this clone was ignored | 533/534 (99 %) | 0 diff (100 %id) | |
DB340380 | testis | .b | 5057 to 5628 | 2 to 575 | Suspected internal deletion, this clone was ignored | 574/574 (100 %) | 5 diff (99.2 %id) | ||
DB155972 | thymus | .b | 5020 to 5613 | 2 to 595 | capped | 594/594 (100 %) | 0 diff (100 %id) | ||
DB346489 | thymus | .b | 7896 to 8428 | 533 to 1 | 533/533 (100 %) | 0 diff (100 %id) | |||
TI_154163076 | .c-u | 925 to 1642 | 80 to 800 | tiling clone, | 721/721 (100 %) | 17 diff (97.7 %id) | |||
TI_813709223 | .b | 1696 to 1992 | 302 to 8 | fully sequenced, | 295/302 (97 %) | 0 diff (100 %id) | |||
TI_813709224 | .b | 1489 to 2026 | 1 to 538 | fully sequenced, AAA | 538/538 (100 %) | 12 diff (97.8 %id) |
? | Gene Summary | Gene on genome | mRNA:.a, .b, .c-u | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes DC |