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Gene BDNFTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
136 supporting clones for gene BDNF back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
EF689019   .a 1 to 4059 1 to 4057 exact tiling clone,   4057/4057
(100 %)
5 diff
(99.9 %id)
NM_001143810.1   .a 1 to 4059 1 to 4057 exact RefSeq,   4057/4057
(100 %)
5 diff
(99.9 %id)
EF689012   .b 1 to 3776 1 to 3774 exact tiling clone,   3774/3774
(100 %)
5 diff
(99.9 %id)
NM_001143809.1   .b 1 to 3776 1 to 3774 exact RefSeq,   3774/3774
(100 %)
5 diff
(99.9 %id)
EF689018   .c 1 to 3979 1 to 3976 exact tiling clone,   3976/3976
(100 %)
6 diff
(99.9 %id)
NM_170734.3   .c 1 to 3979 1 to 3976 exact RefSeq,   3976/3976
(100 %)
6 diff
(99.9 %id)
AB038674   .c 35 to 448 1 to 414       414/414
(100 %)
0 diff
(100 %id)
AY054400   .c 35 to 3975 1 to 3939 exact tiling clone, AAA   3939/3939
(100 %)
5 diff
(99.9 %id)
DQ250642 cerebellum .c 221 to 430 1 to 210       210/210
(100 %)
0 diff
(100 %id)
EF689021   .d 1 to 4340 1 to 4338 exact tiling clone,   4338/4338
(100 %)
5 diff
(99.9 %id)
NM_170731.4   .d 1 to 4340 1 to 4338 exact RefSeq,   4338/4338
(100 %)
5 diff
(99.9 %id)
AY054392   .d 310 to 4336 1 to 4025 exact tiling clone, AAA   4025/4025
(100 %)
6 diff
(99.9 %id)
AB038670   .d 331 to 809 1 to 479       479/479
(100 %)
0 diff
(100 %id)
AY442188 brain including amygdala, cerebellum,hippocampus, frontal cortex, pituitary, and medulla .d 501 to 757 1 to 258       258/258
(100 %)
1 diff
(99.7 %id)
AK289853 brain .d 614 to 1558 1 to 945 exact     945/945
(100 %)
1 diff
(99.9 %id)
DA246869 brain .d 615 to 1202 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DA214938 brain .d 617 to 1160 2 to 547   capped   546/546
(100 %)
3 diff
(99.5 %id)
BG210436   .d 637 to 1409 26 to 792       767/818
(93 %)
6 diff
(99.3 %id)
BG207282   .d 642 to 1423 1 to 783       783/783
(100 %)
14 diff
(98.3 %id)
BG182455   .d 646 to 1454 3 to 814       812/814
(99 %)
6 diff
(99.3 %id)
BG215762   .d 646 to 1438 3 to 785       783/785
(99 %)
6 diff
(99.3 %id)
AF400438   .d 651 to 1432 1 to 782   tiling clone,   782/782
(100 %)
0 diff
(100 %id)
BG253427 adenocarcinoma, cell line, Liver .d 664 to 1406 14 to 753       740/925
(80 %)
17 diff
(98.2 %id)
AY656701   .d 669 to 1412 1 to 744       744/744
(100 %)
3 diff
(99.6 %id)
CV029666 mixed .d 669 to 1154 1 to 487       487/487
(100 %)
7 diff
(98.6 %id)
TI_1948101052   .d 669 to 979 131 to 441       311/338
(92 %)
6 diff
(98.3 %id)
TI_1948101193   .d 669 to 943 125 to 399       275/302
(91 %)
6 diff
(98.1 %id)
TI_1948101343   .d 669 to 1414 130 to 883   fully sequenced,   754/883
(85 %)
6 diff
(99.4 %id)
TI_1948101475   .d 673 to 1419 862 to 115       748/1326
(56 %)
25 diff
(98.2 %id)
BG212547   .d 677 to 1515 44 to 892       849/894
(94 %)
24 diff
(97.4 %id)
T29889 thyroid gland .d 747 to 1032 1 to 286       286/286
(100 %)
0 diff
(100 %id)
AW951554   .d 748 to 1339 1 to 597       597/597
(100 %)
9 diff
(98.5 %id)
FN063838 breast carcinoma .d 833 to 902 1 to 71       71/73
(97 %)
5 diff
(93.2 %id)
W48569 senescent fibroblast .d 887 to 1320 1 to 443       443/445
(99 %)
12 diff
(97.4 %id)
TI_1948101344   .d 889 to 1419 646 to 118   fully sequenced,   529/646
(81 %)
10 diff
(98.5 %id)
AI339280 pooled germ cell tumors .d 939 to 1683 742 to 1       742/786
(94 %)
9 diff
(98.9 %id)
AA905721 pooled .d 1040 to 1728 680 to 1       680/680
(100 %)
27 diff
(96.1 %id)
CN483136 eye .d 1051 to 1671 1 to 621       621/621
(100 %)
1 diff
(99.9 %id)
TI_1948101053   .d 1072 to 1419 463 to 116       348/367
(94 %)
6 diff
(98.4 %id)
BM999367 Fibrosarcoma .d 1079 to 1720 660 to 19   AAA   642/642
(100 %)
1 diff
(99.9 %id)
CN483718 eye .d 1084 to 1374 25 to 315       291/315
(92 %)
6 diff
(98.1 %id)
AW593915 pooled germ cell tumors .d 1116 to 1726 611 to 2       610/611
(99 %)
0 diff
(100 %id)
BF109821 pooled .d 1123 to 1407 285 to 1       285/285
(100 %)
3 diff
(99.0 %id)
BM996762 lung, Metastatic Chondrosarcoma .d 1134 to 1706 577 to 4       574/577
(99 %)
0 diff
(100 %id)
AI242172 liver and spleen .d 1142 to 1678 539 to 1       539/539
(100 %)
27 diff
(95.0 %id)
TI_1948101194   .d 1164 to 1419 375 to 120       256/275
(93 %)
5 diff
(98.2 %id)
BX413208 brain, fetal brain .d 1166 to 1907 741 to 1       741/828
(89 %)
20 diff
(97.6 %id)
AI457725 pooled .d 1194 to 1720 536 to 12   AAA   525/525
(100 %)
11 diff
(98.0 %id)
AI086584 senescent fibroblast .d 1196 to 1910 718 to 6       713/718
(99 %)
0 diff
(100 %id)
BX409796 brain, fetal brain .d 1208 to 1911 1 to 699       699/699
(100 %)
7 diff
(99.0 %id)
AA234298 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1235 to 1588 1 to 349   fully sequenced,   349/349
(100 %)
3 diff
(99.2 %id)
BF439589 pooled .d 1242 to 1705 465 to 1       465/465
(100 %)
3 diff
(99.4 %id)
BM988708 lung, Lung Focal Fibrosis .d 1252 to 1691 458 to 19   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 440/440
(100 %)
0 diff
(100 %id)
CF130615 Chondrosarcoma Lung Metastasis cell lines, lung .d 1268 to 1727 1 to 460   AAA   460/460
(100 %)
0 diff
(100 %id)
TI_154192615   .d 1268 to 1727 51 to 510   AAA   460/460
(100 %)
0 diff
(100 %id)
DB557220 hypothalamus .d 1296 to 1732 1 to 437     Submitted on the opposite strand 437/437
(100 %)
9 diff
(98.0 %id)
AI086251 liver and spleen .d 1372 to 1720 357 to 1       357/357
(100 %)
11 diff
(97.0 %id)
CF129811 Chondrosarcoma Lung Metastasis cell lines, lung .d 1434 to 1911 1 to 478   AAA   478/478
(100 %)
3 diff
(99.4 %id)
TI_154191688   .d 1434 to 1911 51 to 528   AAA   478/478
(100 %)
3 diff
(99.4 %id)
AA262988 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1558 to 1910 357 to 14   tiling clone, fully sequenced, AAA   344/344
(100 %)
1 diff
(99.8 %id)
CR739210 pooled germ cell tumors .d 2085 to 2254 1 to 170       170/170
(100 %)
0 diff
(100 %id)
F07596 brain, total brain .d 2328 to 2658 1 to 331       331/331
(100 %)
0 diff
(100 %id)
AA318537 adrenal gland .d 2794 to 3136 344 to 1     Submitted on the opposite strand 344/344
(100 %)
3 diff
(99.2 %id)
TI_154011278   .d 3571 to 4405 919 to 109   tiling clone,   811/1286
(63 %)
0 diff
(100 %id)
AI990480 pooled germ cell tumors .d 3685 to 4233 555 to 7   tiling clone,   549/555
(98 %)
0 diff
(100 %id)
AI655574 pooled germ cell tumors .d 3755 to 4231 475 to 1       475/475
(100 %)
0 diff
(100 %id)
AI655563 pooled germ cell tumors .d 3812 to 4222 420 to 10       411/420
(97 %)
0 diff
(100 %id)
AI399831 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3861 to 4231 388 to 18   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 371/371
(100 %)
2 diff
(99.5 %id)
BF508122   .d 3908 to 4226 336 to 18   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 319/319
(100 %)
0 diff
(100 %id)
BF001334 Prostate .d 3937 to 4226 290 to 1       290/290
(100 %)
0 diff
(100 %id)
AI127530 uterus .d 3959 to 4336 396 to 19   AAA   378/378
(100 %)
11 diff
(97.1 %id)
BE551477 pooled germ cell tumors .d 4071 to 4231 183 to 1       183/184
(99 %)
5 diff
(97.3 %id)
Z40648 brain, total brain .d 4153 to 4336 184 to 1       184/184
(100 %)
0 diff
(100 %id)
EF689014   .e 1 to 4000 1 to 3998 exact tiling clone,   3998/3998
(100 %)
6 diff
(99.9 %id)
NM_001143813.1   .e 1 to 4000 1 to 3998 exact RefSeq,   3998/3998
(100 %)
6 diff
(99.9 %id)
BU506938 leiomyosarcoma, uterus .e 46 to 935 1 to 895       895/904
(99 %)
14 diff
(98.5 %id)
EF689011   .f 1 to 3766 1 to 3764 exact tiling clone,   3764/3764
(100 %)
5 diff
(99.9 %id)
NM_001143808.1   .f 1 to 3766 1 to 3764 exact RefSeq,   3764/3764
(100 %)
5 diff
(99.9 %id)
EF689009   .g-u 1 to 4764 8 to 4769 exact tiling clone,   4762/4769
(99 %)
6 diff
(99.9 %id)
NM_170735.5   .g-u 8 to 4764 1 to 4755 exact RefSeq,   4755/4755
(100 %)
7 diff
(99.9 %id)
M61176 retina .g-u 531 to 2104 1 to 1574 exact     1574/1574
(100 %)
3 diff
(99.9 %id)
EF674518   .h 1 to 4044 1 to 4042 exact tiling clone,   4042/4042
(100 %)
5 diff
(99.9 %id)
NM_001143806.1   .h 1 to 4044 1 to 4042 exact RefSeq,   4042/4042
(100 %)
5 diff
(99.9 %id)
AY054394   .h 57 to 4040 1 to 3982 exact tiling clone, AAA   3982/3982
(100 %)
5 diff
(99.9 %id)
EF674517   .i 1 to 3829 1 to 3827 exact tiling clone,   3827/3827
(100 %)
5 diff
(99.9 %id)
NM_001143805.1   .i 1 to 3829 1 to 3827 exact RefSeq,   3827/3827
(100 %)
5 diff
(99.9 %id)
AY054393   .i 57 to 3825 1 to 3768 exact tiling clone, AAA   3768/3768
(100 %)
6 diff
(99.9 %id)
EF689015   .j 1 to 4018 1 to 4016 exact tiling clone,   4016/4016
(100 %)
6 diff
(99.9 %id)
NM_001709.4   .j 1 to 4018 1 to 4016 exact RefSeq,   4016/4016
(100 %)
6 diff
(99.9 %id)
X60201   .j 56 to 1402 6 to 1352 exact     1347/1353
(99 %)
11 diff
(99.2 %id)
X91251   .j 57 to 1395 1 to 1333 Q75H R125M R127L     1333/1335
(99 %)
17 diff
(98.8 %id)
AY054398   .j 60 to 4014 1 to 3953 exact tiling clone, AAA   3953/3953
(100 %)
5 diff
(99.9 %id)
DR006358 Prostate .j 121 to 608 1 to 487       487/487
(100 %)
1 diff
(99.8 %id)
CF126792 Chondrosarcoma Lung Metastasis cell lines, lung .j 193 to 896 1 to 704       704/704
(100 %)
2 diff
(99.8 %id)
TI_154189843   .j 193 to 1056 51 to 906       856/1023
(83 %)
27 diff
(97.4 %id)
AB038673   .j 272 to 487 1 to 216       216/216
(100 %)
0 diff
(100 %id)
EF674521   .k 1 to 4030 1 to 4028 exact tiling clone,   4028/4028
(100 %)
5 diff
(99.9 %id)
NM_170733.3   .k 1 to 4030 1 to 4028 exact RefSeq,   4028/4028
(100 %)
5 diff
(99.9 %id)
BI754574 brain .k 6 to 821 1 to 826       826/994
(83 %)
14 diff
(98.6 %id)
TI_57217204   .k 6 to 821 35 to 860       826/1028
(80 %)
19 diff
(98.2 %id)
DR001144 fetal brain .k 9 to 731 1 to 722       722/723
(99 %)
8 diff
(98.9 %id)
BI754777 brain .k 23 to 606 21 to 614       594/614
(96 %)
14 diff
(97.8 %id)
TI_57217273   .k 23 to 606 51 to 644       594/644
(92 %)
13 diff
(98.0 %id)
TI_44344601   .k 23 to 643 77 to 696       620/696
(89 %)
7 diff
(99.0 %id)
TI_57215991   .k 25 to 782 25 to 780       756/780
(96 %)
9 diff
(98.9 %id)
BI670154 brain, hypothalamus .k 27 to 643 1 to 617       617/617
(100 %)
5 diff
(99.2 %id)
BC029795 Brain, adult, 6 pooled whole brains .k 28 to 1600 1 to 1572 V66M available from MGC, AAA   1572/1572
(100 %)
6 diff
(99.7 %id)
BI755075 brain .k 28 to 782 1 to 753       753/753
(100 %)
4 diff
(99.5 %id)
DB487806 hypothalamus .k 36 to 231 1 to 196       196/341
(57 %)
6 diff
(98.3 %id)
TI_45379204   .k 104 to 863 77 to 837       761/1046
(72 %)
16 diff
(98.5 %id)
BI488610 brain .k 105 to 863 1 to 760       760/969
(78 %)
10 diff
(99.0 %id)
DN992913 brain, whole brain .k 115 to 890 1 to 774       774/780
(99 %)
7 diff
(99.2 %id)
AB038672   .k 119 to 499 1 to 381       381/381
(100 %)
0 diff
(100 %id)
AY054397   .k 119 to 4026 1 to 3906 exact tiling clone, AAA   3906/3906
(100 %)
5 diff
(99.9 %id)
CR616691 fetal brain .k 139 to 1598 1 to 1460 exact tiling clone,   1460/1460
(100 %)
0 diff
(100 %id)
BX419519 brain, fetal brain .k 139 to 1028 1 to 890       890/890
(100 %)
5 diff
(99.5 %id)
W61126 heart .k 178 to 606 1 to 428     Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 428/428
(100 %)
20 diff
(95.4 %id)
W63616 heart .k 781 to 1390 618 to 17   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 602/612
(98 %)
12 diff
(98.1 %id)
EF674520   .l 1 to 3930 1 to 3928 exact tiling clone,   3928/3928
(100 %)
5 diff
(99.9 %id)
NM_001143807.1   .l 1 to 3930 1 to 3928 exact RefSeq,   3928/3928
(100 %)
5 diff
(99.9 %id)
AY054396   .l 111 to 3926 10 to 3823   tiling clone, AAA   3814/3814
(100 %)
5 diff
(99.9 %id)
EF674519   .m 1 to 4127 1 to 4125 exact tiling clone,   4125/4125
(100 %)
5 diff
(99.9 %id)
NM_170732.4   .m 1 to 4127 1 to 4125 exact RefSeq,   4125/4125
(100 %)
5 diff
(99.9 %id)
AY054395   .m 57 to 4123 1 to 4065 exact tiling clone, AAA   4065/4065
(100 %)
5 diff
(99.9 %id)
AB038671   .m 102 to 545 1 to 445       445/445
(100 %)
3 diff
(99.4 %id)
AK289763 brain .m 302 to 1268 1 to 967 exact     967/967
(100 %)
1 diff
(99.9 %id)
DA223029 brain .m 303 to 828 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
EF689010   .n 1 to 4530 8 to 4535 exact tiling clone,   4528/4535
(99 %)
11 diff
(99.8 %id)
NM_001143816.1   .n 8 to 4530 1 to 4521 exact RefSeq,   4521/4521
(100 %)
5 diff
(99.9 %id)
EF689013   .o 1 to 3918 1 to 3916 exact tiling clone,   3916/3916
(100 %)
7 diff
(99.9 %id)
NM_001143812.1   .o 1 to 3918 1 to 3916 exact RefSeq,   3916/3916
(100 %)
5 diff
(99.9 %id)
CX751420 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .o 22 to 754 1 to 733   tiling clone, Submitted on the opposite strand 733/733
(100 %)
4 diff
(99.5 %id)
EF689020   .p 1 to 4176 1 to 4174 exact tiling clone,   4174/4174
(100 %)
5 diff
(99.9 %id)
NM_001143811.1   .p 1 to 4176 1 to 4174 exact RefSeq,   4174/4174
(100 %)
5 diff
(99.9 %id)
EF689016   .q 1 to 4125 1 to 4123 exact tiling clone,   4123/4123
(100 %)
6 diff
(99.9 %id)
NM_001143814.1   .q 1 to 4125 1 to 4123 exact RefSeq,   4123/4123
(100 %)
6 diff
(99.9 %id)
CN265347 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .q 37 to 230 13 to 206       194/206
(94 %)
6 diff
(97.1 %id)
W48706 senescent fibroblast .q 330 to 813 1 to 484 R53E T54D R55K W56V L57A ...     484/484
(100 %)
6 diff
(98.8 %id)
EF689017   Gene BDNF, variant not shown         Suspected internal deletion, this clone was ignored    
AY054399   Gene BDNF, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AY054406   Gene BDNF, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BG213052   Gene BDNF, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI