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Gene BCL3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
148 supporting clones for gene BCL3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ933781 large cell carcinoma, lung .a 1 to 487 1 to 487   tiling clone,   487/1052
(46 %)
7 diff
(99.4 %id)
BM558947 amelanotic melanoma, cell line, skin .a 314 to 949 1 to 642       640/1417
(45 %)
22 diff
(98.5 %id)
BM810694 amelanotic melanoma, cell line, skin .a 315 to 885 59 to 635       577/1456
(39 %)
27 diff
(98.2 %id)
BM560834 amelanotic melanoma, cell line, skin .a 315 to 1054 15 to 759       745/1230
(60 %)
32 diff
(97.4 %id)
BQ962084 leiomyosarcoma, uterus .a 316 to 911 1 to 600       600/976
(61 %)
9 diff
(99.1 %id)
BQ948686 epidermoid carcinoma, cell line, lung .a 319 to 1082 4 to 773       770/970
(79 %)
36 diff
(96.3 %id)
BM919682 pooled pancreas and spleen .a 321 to 993 19 to 694       676/1063
(63 %)
17 diff
(98.5 %id)
BQ877688 epidermoid carcinoma, cell line, salivary gland .a 326 to 1120 1 to 805       805/1024
(78 %)
30 diff
(97.1 %id)
BU501187 eye, normal pigmented retinal epithelium .a 326 to 1117 1 to 801       801/960
(83 %)
17 diff
(98.3 %id)
NM_005178.4   .a 326 to 2189 1 to 1864   RefSeq,   1864/1864
(100 %)
0 diff
(100 %id)
BM807976 amelanotic melanoma, cell line, skin .a 327 to 1056 16 to 756       741/1180
(62 %)
25 diff
(97.9 %id)
BC064993 Lung, epidermoid carcinoma .a 328 to 2188 1 to 1861   tiling clone, available from MGC, AAA   1861/1861
(100 %)
0 diff
(100 %id)
BQ073792 epidermoid carcinoma, cell line, lung .a 329 to 1087 1 to 761       761/1023
(74 %)
21 diff
(98.0 %id)
BQ933634 epidermoid carcinoma, cell line, lung .a 329 to 913 1 to 586       586/1046
(56 %)
16 diff
(98.5 %id)
BQ941806 epidermoid carcinoma, cell line, lung .a 329 to 1126 1 to 798       798/865
(92 %)
10 diff
(98.9 %id)
BM558907 amelanotic melanoma, cell line, skin .a 332 to 1078 1 to 757       757/1107
(68 %)
31 diff
(97.2 %id)
DR006481 Spleen .a 332 to 869 76 to 612       537/612
(87 %)
6 diff
(99.1 %id)
BM552245 astrocytoma grade IV, cell line, brain .a 338 to 1019 1 to 693       693/1081
(64 %)
21 diff
(98.1 %id)
BQ669552 epidermoid carcinoma, cell line, salivary gland .a 342 to 913 1 to 572       572/960
(59 %)
14 diff
(98.6 %id)
BQ928648 carcinoma, cell line, Prostate .a 342 to 915 1 to 577       577/981
(58 %)
9 diff
(99.1 %id)
BQ922033 epidermoid carcinoma, cell line, lung .a 379 to 989 1 to 616       616/1030
(59 %)
39 diff
(96.3 %id)
M31732   .a 379 to 2188 1 to 1813       1813/1813
(100 %)
11 diff
(99.4 %id)
CR979161 T-Lymphocytes .a 429 to 589 1 to 161       161/161
(100 %)
1 diff
(99.4 %id)
CR983075 T-Lymphocytes .a 429 to 859 1 to 432       432/432
(100 %)
3 diff
(99.4 %id)
CR995481 T-Lymphocytes .a 429 to 883 1 to 455       455/455
(100 %)
4 diff
(99.2 %id)
AW732325 Kidney, renal cell adenocarcinoma .a 567 to 1188 1 to 621       621/621
(100 %)
11 diff
(98.3 %id)
CB068371 Pancreas, Purified pancreatic islet .a 607 to 1191 586 to 1       586/586
(100 %)
6 diff
(99.0 %id)
BQ301177 bocio_tumor .a 633 to 892 22 to 279       258/279
(92 %)
11 diff
(96.1 %id)
BU145268 epidermoid carcinoma, cell line, salivary gland .a 713 to 1548 1 to 841       841/988
(85 %)
23 diff
(97.7 %id)
BQ673686 epidermoid carcinoma, cell line, salivary gland .a 713 to 1574 1 to 868       868/921
(94 %)
11 diff
(98.9 %id)
BQ670418 epidermoid carcinoma, cell line, salivary gland .a 713 to 1571 1 to 881       814/949
(85 %)
25 diff
(97.4 %id)
BQ690830 ductal carcinoma, cell line, Pancreas .a 734 to 1607 27 to 896       870/906
(96 %)
13 diff
(98.6 %id)
BQ675326 epidermoid carcinoma, cell line, salivary gland .a 735 to 1544 1 to 821       821/911
(90 %)
23 diff
(97.5 %id)
BQ893402 ductal carcinoma, cell line, Pancreas .a 736 to 1548 24 to 837       814/932
(87 %)
18 diff
(98.1 %id)
BI084242 epidermoid carcinoma, cell line, salivary gland .a 854 to 1574 1 to 719       719/886
(81 %)
7 diff
(99.3 %id)
BI161195 epithelioid carcinoma cell line, Pancreas .a 890 to 1709 1 to 808       808/809
(99 %)
23 diff
(97.2 %id)
BI085573 astrocytoma grade IV, cell line, brain .a 989 to 1601 1 to 632       549/632
(86 %)
20 diff
(96.9 %id)
BM017616 astrocytoma grade IV, cell line, brain .a 989 to 1672 1 to 687       687/687
(100 %)
5 diff
(99.3 %id)
BM018592 astrocytoma grade IV, cell line, brain .a 989 to 1671 1 to 683       683/684
(99 %)
3 diff
(99.6 %id)
TI_59388120   .a 990 to 1672 61 to 746       686/686
(100 %)
4 diff
(99.5 %id)
TI_59389254   .a 990 to 1671 103 to 784       682/683
(99 %)
2 diff
(99.8 %id)
BM908503 astrocytoma grade IV, cell line, brain .a 991 to 1627 1 to 640       640/1094
(58 %)
13 diff
(98.9 %id)
BM910860 astrocytoma grade IV, cell line, brain .a 991 to 1651 1 to 664       664/1089
(60 %)
14 diff
(98.8 %id)
AA064693 Pancreas .a 1016 to 1236 1 to 221       221/221
(100 %)
6 diff
(97.3 %id)
BG385544 adenocarcinoma cell line, colon .a 1067 to 1775 1 to 696       696/697
(99 %)
25 diff
(96.5 %id)
AW364291 denis_drash .a 1162 to 1624 465 to 3       463/465
(99 %)
1 diff
(99.8 %id)
AW369377 breast_normal .a 1162 to 1639 1 to 478       478/478
(100 %)
3 diff
(99.4 %id)
BF001239 colon, colon tumor, RER+ .a 1219 to 1476 1 to 258     Submitted on the opposite strand 258/258
(100 %)
0 diff
(100 %id)
AA902886 Kidney .a 1228 to 1609 1 to 380     Submitted on the opposite strand 380/380
(100 %)
16 diff
(95.8 %id)
AI347138 colon, colon tumor, RER+ .a 1237 to 1581 1 to 345     Submitted on the opposite strand 345/345
(100 %)
0 diff
(100 %id)
AW337619 lung, two pooled squamous cell carcinomas .a 1248 to 1567 1 to 323     Submitted on the opposite strand 323/323
(100 %)
2 diff
(99.4 %id)
CA946477 eye, lacrimal gland .a 1248 to 1885 635 to 1     Submitted on the opposite strand 635/635
(100 %)
1 diff
(99.9 %id)
BQ227782 epithelioid carcinoma, Pancreas .a 1257 to 1769 21 to 533       513/887
(57 %)
7 diff
(99.3 %id)
BF590941 colon, colon tumor, RER+ .a 1271 to 1573 1 to 303     Submitted on the opposite strand 303/303
(100 %)
0 diff
(100 %id)
AI000220 pooled germ cell tumors .a 1297 to 1649 1 to 352     Submitted on the opposite strand 352/352
(100 %)
34 diff
(90.4 %id)
AW845198 colon .a 1306 to 1523 218 to 1       218/218
(100 %)
1 diff
(99.6 %id)
AW845201 colon .a 1329 to 1523 195 to 1       195/195
(100 %)
2 diff
(99.0 %id)
CA426845 cell lines, Chondrosarcoma .a 1472 to 2188 733 to 17   AAA   717/719
(99 %)
1 diff
(99.9 %id)
AA307228 colon .a 1483 to 1845 1 to 363       363/363
(100 %)
1 diff
(99.8 %id)
AW949323   .a 1485 to 2011 1 to 524       524/524
(100 %)
1 diff
(99.9 %id)
EL948136 eyeball .a 1499 to 1954 1 to 460       460/460
(100 %)
9 diff
(98.1 %id)
BM713016 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1537 to 1739 1 to 203   fully sequenced,   203/203
(100 %)
0 diff
(100 %id)
H61832 ovarian tumor, ovary .a 1573 to 1899 1 to 331   fully sequenced,   331/331
(100 %)
6 diff
(98.2 %id)
BI017810 lung_tumor .a 1593 to 1964 380 to 5       376/380
(98 %)
0 diff
(100 %id)
CB528691 Aveolar Macrophage, lung .a 1615 to 2188 593 to 17   AAA   577/577
(100 %)
3 diff
(99.5 %id)
BG166493 hypernephroma, cell line, Kidney .a 1620 to 2157 1 to 534       534/534
(100 %)
6 diff
(98.9 %id)
BP390647 pancreatic islet .a 1700 to 2183 1 to 485     Submitted on the opposite strand 485/485
(100 %)
2 diff
(99.6 %id)
BM676215 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1709 to 2188 496 to 17   fully sequenced, AAA   480/480
(100 %)
0 diff
(100 %id)
AI205817   .a 1739 to 2189 444 to 3   tiling clone,   442/493
(89 %)
0 diff
(100 %id)
CV372342 colon .a 1769 to 1935 170 to 4     Submitted on the opposite strand 167/170
(98 %)
0 diff
(100 %id)
AA064651 Pancreas .a 1772 to 2188 425 to 1       425/425
(100 %)
7 diff
(98.4 %id)
AW084504 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 1807 to 2188 400 to 18   AAA   383/383
(100 %)
13 diff
(96.7 %id)
BM997350 lung, Metastatic Chondrosarcoma .a 1821 to 2188 390 to 17   AAA   374/376
(99 %)
11 diff
(97.1 %id)
AV705787 adrenal gland .a 1836 to 2188 1 to 353   AAA   353/353
(100 %)
1 diff
(99.8 %id)
AA293186 ovarian tumor, ovary .a 1839 to 2173 1 to 337   fully sequenced,   337/337
(100 %)
9 diff
(97.4 %id)
BU617786 Bone, Subchondral Bone .a 1852 to 2188 355 to 19   AAA   337/337
(100 %)
2 diff
(99.5 %id)
CA435479 lung, Metastatic Chondrosarcoma .a 1852 to 2188 355 to 19   AAA   337/337
(100 %)
2 diff
(99.5 %id)
AA292503 ovarian tumor, ovary .a 1865 to 2188 1 to 326   fully sequenced,   326/326
(100 %)
31 diff
(90.5 %id)
H61833 ovarian tumor, ovary .a 1869 to 2166 299 to 1   fully sequenced,   299/299
(100 %)
1 diff
(99.7 %id)
BM759970 Ascites, stomach .a 1881 to 2188 1 to 308   AAA   308/308
(100 %)
0 diff
(100 %id)
AA235518 ovarian tumor, ovary .a 1908 to 2178 279 to 9   fully sequenced,   271/279
(97 %)
2 diff
(99.3 %id)
CU448546 epidermis .a 1913 to 2003 1 to 91       91/113
(80 %)
9 diff
(92.1 %id)
AA293187 ovarian tumor, ovary .a 1916 to 2188 273 to 1   fully sequenced,   273/273
(100 %)
0 diff
(100 %id)
AA631354 thyroid .a 1925 to 2188 280 to 17   AAA   264/271
(97 %)
1 diff
(99.7 %id)
BG952058 colon .a 1955 to 2150 196 to 3       194/196
(98 %)
0 diff
(100 %id)
CD678867 eye, Trabecular meshwork .a 1970 to 2188 1 to 219   AAA   219/219
(100 %)
0 diff
(100 %id)
AA845677 Spleen .a 1994 to 2189 203 to 8       196/203
(96 %)
0 diff
(100 %id)
GD148326   .a 2024 to 2189 1 to 167       167/181
(92 %)
8 diff
(95.6 %id)
AA594356 colon, colon tumor RER+ .a 2052 to 2188 138 to 2       137/138
(99 %)
0 diff
(100 %id)
AI564111 Kidney .a 2082 to 2188 121 to 15   AAA   107/107
(100 %)
1 diff
(99.1 %id)
BG035426 adenocarcinoma, cell line, Liver .b 1 to 763 1 to 762   tiling clone,   762/1065
(71 %)
36 diff
(96.7 %id)
BQ962025 leiomyosarcoma, uterus .b 54 to 556 1 to 505       505/1049
(48 %)
22 diff
(98.0 %id)
BM833258 stomach .b 147 to 516 1 to 370       370/370
(100 %)
2 diff
(99.5 %id)
BU186072 epidermoid carcinoma, cell line, salivary gland .b 172 to 655 36 to 522   tiling clone,   487/1120
(43 %)
12 diff
(99.0 %id)
BQ674996 epidermoid carcinoma, cell line, salivary gland .b 191 to 638 1 to 452       452/1250
(36 %)
7 diff
(99.5 %id)
CR996549 T-Lymphocytes .b 278 to 637 1 to 361       361/361
(100 %)
4 diff
(98.9 %id)
CR979036 T-Lymphocytes .b 278 to 624 1 to 348       348/357
(97 %)
3 diff
(99.2 %id)
BM043059 carcinoma, cell line, Prostate .b 594 to 1413 1 to 818   tiling clone,   818/819
(99 %)
10 diff
(98.8 %id)
BF514754   .b 1069 to 1526 1 to 458   tiling clone, Submitted on the opposite strand 458/459
(99 %)
5 diff
(99.0 %id)
AK296180 thalamus .c 1 to 1714 1 to 1714 exact tiling clone,   1714/1714
(100 %)
1 diff
(100.0 %id)
DC340628 thalamus .c 1 to 554 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
AA292230 ovarian tumor, ovary .c 423 to 892 1 to 470   fully sequenced,   470/470
(100 %)
7 diff
(98.6 %id)
AI829875 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 428 to 930 502 to 1       502/550
(91 %)
20 diff
(96.4 %id)
BU784645 Pancreas, Purified pancreatic islet .c 446 to 934 493 to 1       493/493
(100 %)
38 diff
(92.3 %id)
BE677720 pooled .c 465 to 999 537 to 1       537/537
(100 %)
7 diff
(98.7 %id)
BM708626 eye, RPE and Choroid .c 465 to 990 1 to 526       526/526
(100 %)
0 diff
(100 %id)
TI_151706390   .c 465 to 982 581 to 64       518/993
(52 %)
0 diff
(100 %id)
BQ688134 ductal carcinoma, cell line, Pancreas .c 469 to 1229 1 to 762       762/912
(83 %)
2 diff
(99.8 %id)
AI949568 anaplastic oligodendroglioma, brain .c 474 to 930 456 to 1       456/456
(100 %)
2 diff
(99.6 %id)
H13606 placenta .c 475 to 893 1 to 430       430/435
(98 %)
22 diff
(95.0 %id)
TI_158432964   .c 475 to 982 593 to 86       508/1049
(48 %)
1 diff
(100.0 %id)
AA845698 Spleen .c 478 to 930 452 to 1       452/452
(100 %)
10 diff
(97.8 %id)
BX283637 blood, natural killer cells, cell line .c 479 to 978 1 to 500       500/500
(100 %)
1 diff
(99.8 %id)
BM918173 blood, natural killer cells, cell line .c 481 to 1229 1 to 749       749/1056
(70 %)
6 diff
(99.5 %id)
BQ671669 epidermoid carcinoma, cell line, salivary gland .c 486 to 1128 1 to 644       644/974
(66 %)
7 diff
(99.3 %id)
BQ673772 epidermoid carcinoma, cell line, salivary gland .c 486 to 1202 1 to 719       719/924
(77 %)
27 diff
(97.1 %id)
BU838627 epidermoid carcinoma, cell line, salivary gland .c 486 to 1199 1 to 724       724/970
(74 %)
34 diff
(96.5 %id)
BQ672395 epidermoid carcinoma, cell line, salivary gland .c 486 to 982 1 to 500       500/944
(52 %)
12 diff
(98.8 %id)
BQ669654 epidermoid carcinoma, cell line, salivary gland .c 486 to 1229 1 to 746       746/919
(81 %)
3 diff
(99.7 %id)
AA811855 germinal center B cell .c 492 to 887 426 to 33       394/426
(92 %)
16 diff
(96.3 %id)
AW517094 cervix .c 494 to 969 476 to 1       476/480
(99 %)
4 diff
(99.2 %id)
AI800960 pooled .c 505 to 930 427 to 1       427/427
(100 %)
12 diff
(97.2 %id)
BE711860 head_neck .c 507 to 1155 651 to 6       646/662
(97 %)
5 diff
(99.3 %id)
BQ669889 epidermoid carcinoma, cell line, salivary gland .c 508 to 1156 1 to 647       647/972
(66 %)
13 diff
(98.7 %id)
BQ669957 epidermoid carcinoma, cell line, salivary gland .c 508 to 1157 1 to 651       651/932
(69 %)
19 diff
(98.0 %id)
AI743183 pooled .c 510 to 930 421 to 1       421/421
(100 %)
2 diff
(99.6 %id)
AA748882 germinal center B cell .c 511 to 930 414 to 1       417/414
(100 %)
14 diff
(96.7 %id)
AI168170 pooled .c 516 to 981 466 to 1       466/466
(100 %)
0 diff
(100 %id)
AI814442 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 519 to 982 472 to 7       465/472
(98 %)
37 diff
(92.2 %id)
AI344305 colon, colon tumor, RER+ .c 527 to 999 474 to 1       474/474
(100 %)
1 diff
(99.8 %id)
AI498131 anaplastic oligodendroglioma, brain .c 552 to 981 430 to 1       430/441
(97 %)
0 diff
(100 %id)
AI393634 pooled .c 581 to 930 349 to 1       349/431
(80 %)
4 diff
(99.1 %id)
AI364727 B-cell, chronic lymphotic leukemia .c 582 to 999 423 to 1       423/464
(91 %)
11 diff
(97.7 %id)
AA463966 ovarian tumor, ovary .c 606 to 999 393 to 1       393/393
(100 %)
4 diff
(99.0 %id)
AA481824 ovarian tumor, ovary .c 617 to 687 1 to 72   fully sequenced,   72/72
(100 %)
4 diff
(94.5 %id)
AA399439 ovarian tumor, ovary .c 618 to 773 155 to 1   fully sequenced,   155/155
(100 %)
4 diff
(97.5 %id)
AA496678 ovarian tumor, ovary .c 657 to 930 272 to 1   fully sequenced,   275/275
(100 %)
6 diff
(97.9 %id)
BX283569 epithelioid carcinoma cell line, Pancreas .c 663 to 1159 1 to 497       497/498
(99 %)
4 diff
(99.2 %id)
BF591115 colon, colon tumor, RER+ .c 700 to 930 231 to 1       231/231
(100 %)
3 diff
(98.8 %id)
AW073261 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .c 746 to 970 225 to 1       225/225
(100 %)
7 diff
(96.9 %id)
AW384318 head_neck .c 943 to 1104 18 to 177       160/177
(90 %)
10 diff
(94.4 %id)
BF510933   .c 993 to 1377 1 to 385     Submitted on the opposite strand 385/387
(99 %)
3 diff
(99.3 %id)
BY797193 eye .c 1342 to 1786 1 to 445   tiling clone,   445/445
(100 %)
0 diff
(100 %id)
BI010655 lung_normal .d 1 to 324 72 to 395   tiling clone,   324/395
(82 %)
11 diff
(97.3 %id)
DW431489 Liver .d 48 to 246 71 to 269       199/269
(73 %)
6 diff
(97.8 %id)
AK309453 lung .d 283 to 1713 1 to 1428 exact tiling clone,   1428/1428
(100 %)
2 diff
(99.9 %id)
DC354678 lung .d 283 to 869 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
BX417145 placenta .e-u 1 to 745 1 to 745 R2M P83X tiling clone,   745/745
(100 %)
1 diff
(99.9 %id)
TI_154194612   .f 1 to 841 49 to 888 exact tiling clone,   840/1042
(80 %)
14 diff
(98.7 %id)
CF131153 Chondrosarcoma Lung Metastasis cell lines, lung .f 3 to 821 1 to 818 exact tiling clone,   818/818
(100 %)
10 diff
(98.8 %id)
AI580285 Kidney .g-u 1 to 363 363 to 1 C11* tiling clone,   363/363
(100 %)
2 diff
(99.5 %id)
AA527996 colon .h 1 to 439 441 to 1 G7C D43A G44R L45S T46P ... tiling clone,   441/443
(99 %)
11 diff
(97.6 %id)
BQ332154 lung_tumor .i-u 1 to 213 239 to 27 P34L D35* tiling clone,   213/239
(89 %)
0 diff
(100 %id)
CA392189 eye, RPE/choroid Gene BCL3, variant not shown         This clone was ignored    
CA392190 eye, RPE/choroid Gene BCL3, variant not shown         This clone was ignored    
BQ672311 epidermoid carcinoma, cell line, salivary gland Gene BCL3, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g-u, .h, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI