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Gene BCL11BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
99 supporting clones for gene BCL11B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR992690 T-Lymphocytes .a 1 to 829 1 to 834   tiling clone,   834/836
(99 %)
11 diff
(98.7 %id)
CR975367 T-Lymphocytes .a 161 to 829 1 to 669   tiling clone,   669/678
(98 %)
4 diff
(99.5 %id)
T05531   .a 240 to 537 1 to 299       299/301
(99 %)
4 diff
(98.7 %id)
NM_138576.2   .a 696 to 8511 1 to 7816 exact RefSeq,   7816/7816
(100 %)
0 diff
(100 %id)
AB043584 thymus .a 953 to 3945 1 to 2993 exact tiling clone,   2993/3160
(94 %)
1 diff
(100.0 %id)
AY752976   .a 963 to 1603 1 to 641       641/1183
(54 %)
0 diff
(100 %id)
AY752978   .a 1434 to 1611 1 to 178       178/300
(59 %)
5 diff
(98.4 %id)
CR987519 T-Lymphocytes .a 2600 to 2946 1 to 347       347/347
(100 %)
1 diff
(99.8 %id)
CR979401 T-Lymphocytes .a 2616 to 2925 1 to 310       310/310
(100 %)
0 diff
(100 %id)
CT000410 T-Lymphocytes .a 2836 to 3256 1 to 421       421/423
(99 %)
5 diff
(98.9 %id)
CR990388 T-Lymphocytes .a 2894 to 3340 1 to 447       447/447
(100 %)
1 diff
(99.8 %id)
BE151484 head_neck .a 3426 to 3860 440 to 1     Submitted on the opposite strand 440/440
(100 %)
12 diff
(97.3 %id)
AA333505 Embryo, 8 weeks .a 3441 to 3687 1 to 247       247/247
(100 %)
0 diff
(100 %id)
CR981370 T-Lymphocytes .a 3460 to 4065 1 to 606   tiling clone,   606/610
(99 %)
1 diff
(99.9 %id)
CN310401 embryonic stem cells, DMSO-treated H9 cellline .a 4020 to 4436 1 to 419   tiling clone,   419/419
(100 %)
6 diff
(98.6 %id)
CU455721 epidermis .a 4252 to 4668 1 to 417   tiling clone,   417/426
(97 %)
6 diff
(98.6 %id)
CU446012 epidermis .a 4259 to 4674 420 to 6   tiling clone, Submitted on the opposite strand 415/427
(97 %)
0 diff
(100 %id)
CD701737 normal nasopharynx .a 4839 to 5374 17 to 552   tiling clone,   536/552
(97 %)
6 diff
(99.0 %id)
DB462778 hippocampus .a 4858 to 5316 1 to 460       460/460
(100 %)
19 diff
(95.9 %id)
DB502619 hypothalamus .a 4860 to 5318 1 to 459       459/459
(100 %)
2 diff
(99.6 %id)
BF956797 nervous_normal .a 4882 to 5298 1 to 413       413/413
(100 %)
20 diff
(95.2 %id)
AA918317 pooled .a 4882 to 5385 504 to 1       504/504
(100 %)
0 diff
(100 %id)
BX104143 heart .a 4898 to 5384 1 to 487   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 487/487
(100 %)
0 diff
(100 %id)
AF086271   .a 4898 to 5384 1 to 487   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 487/487
(100 %)
0 diff
(100 %id)
W69189 heart .a 4898 to 5304 1 to 415   AAA   415/440
(94 %)
10 diff
(97.8 %id)
W69134 heart .a 4914 to 5384 477 to 1       477/478
(99 %)
8 diff
(98.4 %id)
AA306914   .a 4918 to 5383 1 to 466       466/466
(100 %)
0 diff
(100 %id)
AW612236 carcinoid, lung .a 4918 to 5387 470 to 1       470/470
(100 %)
0 diff
(100 %id)
BE670095 carcinoid, lung .a 4919 to 5387 469 to 1       469/469
(100 %)
0 diff
(100 %id)
AW016816   .a 4925 to 5384 477 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 460/460
(100 %)
0 diff
(100 %id)
BE467735 carcinoid, lung .a 4929 to 5387 459 to 1       459/459
(100 %)
0 diff
(100 %id)
AW117266 pooled .a 4934 to 5384 451 to 1       451/451
(100 %)
2 diff
(99.6 %id)
AW955278   .a 4954 to 5636 1 to 682   tiling clone,   682/683
(99 %)
10 diff
(98.6 %id)
AA777212 heart .a 4995 to 5375 381 to 1       381/381
(100 %)
0 diff
(100 %id)
AW613469 carcinoid, lung .a 5005 to 5383 381 to 1       381/381
(100 %)
4 diff
(99.0 %id)
AA960937 carcinoid, lung .a 5011 to 5387 377 to 1       377/377
(100 %)
0 diff
(100 %id)
AA491894 Ewing's sarcoma .a 5095 to 5385 291 to 1       291/291
(100 %)
1 diff
(99.7 %id)
BE927806 colon .a 5206 to 5420 14 to 229       216/241
(89 %)
8 diff
(96.7 %id)
AI453101 pooled .a 5212 to 5714 503 to 1       503/503
(100 %)
0 diff
(100 %id)
DB155040 thymus .a 5328 to 5916 2 to 593   capped   592/592
(100 %)
3 diff
(99.5 %id)
BE154004 head_neck .a 5454 to 5746 9 to 300       292/305
(95 %)
10 diff
(96.8 %id)
BI601136 brain, hypothalamus .a 5458 to 6086 1 to 636   tiling clone,   636/796
(79 %)
20 diff
(97.5 %id)
TI_45214260   .a 5462 to 6086 100 to 731       632/891
(70 %)
17 diff
(98.1 %id)
BP389637 pancreatic islet .a 5705 to 6180 1 to 476   tiling clone, Submitted on the opposite strand 476/476
(100 %)
2 diff
(99.6 %id)
DB573847 hypothalamus .a 5903 to 6363 1 to 461   tiling clone, Submitted on the opposite strand 461/462
(99 %)
1 diff
(99.8 %id)
DB528257 hippocampus .a 5913 to 6363 1 to 453     Submitted on the opposite strand 453/454
(99 %)
6 diff
(98.7 %id)
AW975382   .a 5945 to 6208 114 to 376       263/376
(69 %)
6 diff
(98.5 %id)
FN081651 breast carcinoma .a 5946 to 6013 1 to 66       66/67
(98 %)
3 diff
(95.6 %id)
AA714880 Ewing's sarcoma .a 6014 to 6362 349 to 1       349/349
(100 %)
0 diff
(100 %id)
AA355484   .a 6018 to 6360 345 to 2     Submitted on the opposite strand 344/345
(99 %)
0 diff
(100 %id)
DA181174 amygdala .a 6193 to 6749 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA905685   .a 6217 to 6783 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BP366601 thymus .a 6255 to 6833 1 to 579       579/579
(100 %)
0 diff
(100 %id)
CD685973 normal nasopharynx .a 6260 to 6835 30 to 605       576/605
(95 %)
6 diff
(99.1 %id)
FN103740 breast carcinoma .a 6271 to 6358 1 to 88       88/90
(97 %)
1 diff
(98.9 %id)
DB114693 thymus .a 6342 to 6906 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA139566 alzheimer cortex .a 6357 to 6929 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
DA583744 lung .a 6437 to 6977 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DB109175 thymus .a 6453 to 7021 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
BI912572 leukocyte .a 6562 to 7412 20 to 871       852/1053
(80 %)
29 diff
(97.3 %id)
TI_57247458   .a 6562 to 7412 20 to 871       852/1053
(80 %)
29 diff
(97.3 %id)
AW954565   .a 6724 to 7457 10 to 743       734/743
(98 %)
6 diff
(99.2 %id)
AW957349   .a 6724 to 7351 10 to 638       629/639
(98 %)
8 diff
(98.8 %id)
AA350175 brain .a 6725 to 6973 1 to 248       248/248
(100 %)
1 diff
(99.6 %id)
R14255 whole brain .a 6727 to 7151 1 to 452       452/456
(99 %)
29 diff
(93.7 %id)
CN310402 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 6762 to 7203 1 to 443       443/443
(100 %)
3 diff
(99.4 %id)
BG697939 skin .a 6764 to 7476 1 to 713   tiling clone,   713/713
(100 %)
0 diff
(100 %id)
BP429964   .a 6864 to 7159 1 to 296       296/296
(100 %)
2 diff
(99.4 %id)
R61607 whole brain .a 6911 to 7461 1 to 553     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 553/579
(95 %)
17 diff
(97.1 %id)
H09835 whole brain .a 6911 to 7349 1 to 445     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 445/469
(94 %)
10 diff
(97.9 %id)
DA900151 skeletal muscle .a 7223 to 7787 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
AA480194 colon .a 7227 to 7680 1 to 454     Submitted on the opposite strand 454/454
(100 %)
0 diff
(100 %id)
AW969410   .a 7236 to 7558 1 to 323       323/324
(99 %)
1 diff
(99.7 %id)
R88646 brain .a 7343 to 7617 1 to 273       273/273
(100 %)
2 diff
(99.3 %id)
AW382176 head_neck .a 7418 to 7834 7 to 422       416/424
(98 %)
20 diff
(95.3 %id)
CU442943 epidermis .a 7425 to 8123 1 to 699       699/699
(100 %)
6 diff
(99.2 %id)
CU447640 epidermis .a 7425 to 8134 1 to 710       710/710
(100 %)
6 diff
(99.2 %id)
CU452714 epidermis .a 7425 to 8128 1 to 704       704/704
(100 %)
7 diff
(99.1 %id)
CU453551 epidermis .a 7425 to 8213 1 to 789   tiling clone,   789/789
(100 %)
7 diff
(99.2 %id)
CN310399 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 7454 to 7850 1 to 397       397/397
(100 %)
4 diff
(99.0 %id)
CU454620 epidermis .a 7479 to 8248 782 to 13     Submitted on the opposite strand 770/782
(98 %)
0 diff
(100 %id)
CU448314 epidermis .a 7482 to 8248 779 to 13     Submitted on the opposite strand 767/779
(98 %)
0 diff
(100 %id)
CU450895 epidermis .a 7484 to 8248 777 to 13     Submitted on the opposite strand 765/777
(98 %)
0 diff
(100 %id)
CU448150 epidermis .a 7513 to 8248 748 to 13     Submitted on the opposite strand 736/748
(98 %)
0 diff
(100 %id)
CU444662 epidermis .a 7550 to 8245 711 to 16     Submitted on the opposite strand 696/711
(97 %)
0 diff
(100 %id)
CU447370 epidermis .a 7715 to 8215 1 to 501       501/501
(100 %)
8 diff
(98.5 %id)
CU449699 epidermis .a 7719 to 8248 542 to 13     Submitted on the opposite strand 530/546
(97 %)
0 diff
(100 %id)
CU450578 epidermis .a 7719 to 8248 543 to 13     Submitted on the opposite strand 531/547
(97 %)
0 diff
(100 %id)
CU451160 epidermis .a 7719 to 8248 542 to 13     Submitted on the opposite strand 530/546
(97 %)
0 diff
(100 %id)
CU452504 epidermis .a 7719 to 8248 542 to 13     Submitted on the opposite strand 530/546
(97 %)
0 diff
(100 %id)
CU449821 epidermis .a 7725 to 8248 536 to 13     Submitted on the opposite strand 524/538
(97 %)
0 diff
(100 %id)
CU443958 epidermis .a 7747 to 8244 514 to 17     Submitted on the opposite strand 498/515
(96 %)
0 diff
(100 %id)
BQ026852 Chondrosarcoma, Left Pelvis .a 7841 to 8502 679 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 661/661
(100 %)
1 diff
(99.9 %id)
DB331112 skeletal muscle .a 7968 to 8502 535 to 1       535/535
(100 %)
1 diff
(99.9 %id)
H09748 whole brain .a 8046 to 8508 491 to 17   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 475/480
(98 %)
18 diff
(96.3 %id)
R40551 whole brain .a 8111 to 8503 423 to 9       415/451
(92 %)
0 diff
(100 %id)
AJ706631 bone marrow .a 8158 to 8500 11 to 353       343/353
(97 %)
6 diff
(98.4 %id)
CD103963 Pooled-Skin .a 8162 to 8502 1 to 341   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 341/341
(100 %)
2 diff
(99.5 %id)
CN310400 embryonic stem cells, cell lines H1, H7, andH9 .a 8165 to 8511 355 to 8   tiling clone, Submitted on the opposite strand 348/355
(98 %)
0 diff
(100 %id)
R61554 whole brain .a 8176 to 8508 349 to 16   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 334/334
(100 %)
1 diff
(99.8 %id)
AA350215 brain .a 8312 to 8502 191 to 1       191/191
(100 %)
0 diff
(100 %id)
AJ404614   .b 1 to 7603 1 to 7603 exact tiling clone,   7603/7603
(100 %)
0 diff
(100 %id)
NM_022898.1   .b 1 to 7603 1 to 7603 exact RefSeq,   7603/7603
(100 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI