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Gene BCAS4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
94 supporting clones for gene BCAS4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF361220   .a 1 to 917 1 to 918 S21X A22X tiling clone, AAA   918/918
(100 %)
1 diff
(99.9 %id)
NM_017843.3   .a 37 to 1377 1 to 1341   RefSeq, AAA   1341/1341
(100 %)
0 diff
(100 %id)
AK000502   .a 138 to 917 1 to 781   available from FLJ, AAA   781/781
(100 %)
1 diff
(99.9 %id)
BC047337 Lymph, lymphoma .a 172 to 1377 1 to 1206   tiling clone, available from MGC, AAA   1206/1206
(100 %)
1 diff
(100.0 %id)
BM455360 lymph, lymphoma, cell line .a 173 to 1069 1 to 901   available from MGC,   901/1053
(85 %)
18 diff
(98.3 %id)
BP212127 cerebrum .b 1 to 579 1 to 579   tiling clone,   579/579
(100 %)
1 diff
(99.9 %id)
NM_198799.2   .b 1 to 1244 1 to 1244 exact RefSeq, AAA   1244/1244
(100 %)
0 diff
(100 %id)
DA121100 cerebellum .b 66 to 532 2 to 472   capped   471/471
(100 %)
5 diff
(99.0 %id)
BX457956 neuroblastoma .b 109 to 1123 1 to 1004       1004/1065
(94 %)
19 diff
(98.3 %id)
BC038381 Liver, adenocarcinoma .b 115 to 1244 1 to 1131   available from MGC, AAA   1131/1131
(100 %)
2 diff
(99.9 %id)
BG106756 lymph, lymphoma, cell line .b 117 to 905 1 to 776       776/966
(80 %)
30 diff
(96.9 %id)
BG251402 adenocarcinoma, cell line, Liver .b 117 to 937 1 to 825       825/833
(99 %)
45 diff
(94.6 %id)
CN423711 embryonic stem cells, cell lines H1, H7, andH9 .b 121 to 779 1 to 659       659/659
(100 %)
1 diff
(99.9 %id)
CN423714 embryonic stem cells, cell lines H1, H7, andH9 .b 135 to 672 1 to 538       538/538
(100 %)
5 diff
(99.1 %id)
BG758453 B-cells, primary B-cells from tonsils (cell line) .b 140 to 1030 1 to 883       883/890
(99 %)
22 diff
(97.6 %id)
BU858198 adenocarcinoma, cell line, breast .b 143 to 799 24 to 689       666/1019
(65 %)
34 diff
(96.7 %id)
CN423713 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 154 to 740 1 to 587       587/587
(100 %)
4 diff
(99.4 %id)
BM468160 leiomyosarcoma, uterus .b 159 to 553 1 to 395       395/1293
(30 %)
8 diff
(99.4 %id)
BF794094 lymph, lymphoma, cell line .b 161 to 943 1 to 777       777/1106
(70 %)
33 diff
(97.1 %id)
BI964933 Islets of Langerhans, Pancreas .b 161 to 603 1 to 443       443/443
(100 %)
0 diff
(100 %id)
AA286800 germinal center B cell .b 179 to 518 1 to 338       338/338
(100 %)
6 diff
(98.3 %id)
CF126844 Chondrosarcoma Lung Metastasis cell lines, lung .b 180 to 956 1 to 776   tiling clone,   776/776
(100 %)
5 diff
(99.4 %id)
TI_154189909   .b 180 to 1060 63 to 935       873/1003
(87 %)
19 diff
(98.2 %id)
BE907716 epithelioid carcinoma, Pancreas .b 184 to 773 1 to 591       591/821
(71 %)
2 diff
(99.8 %id)
BM824568 Ascites, stomach .b 336 to 892 1 to 557       557/557
(100 %)
0 diff
(100 %id)
BF513753   .b 341 to 785 462 to 18   AAA   445/445
(100 %)
1 diff
(99.8 %id)
CN423712 embryonic stem cells, cell lines H1, H7, andH9 .b 343 to 976 12 to 644       633/644
(98 %)
7 diff
(99.0 %id)
BM455032 lymph, lymphoma, cell line .b 369 to 965 1 to 598       598/1384
(43 %)
12 diff
(99.2 %id)
AA207073 germinal center B cell .b 417 to 825 9 to 417   fully sequenced,   409/417
(98 %)
11 diff
(97.4 %id)
AW408248 lymph .b 488 to 751 1 to 265       265/265
(100 %)
5 diff
(98.2 %id)
BQ961947 epithelioid carcinoma cell line, Pancreas .b 503 to 1244 1 to 742   AAA   742/742
(100 %)
0 diff
(100 %id)
CB048530 Prostate .b 763 to 1245 10 to 492       483/497
(97 %)
7 diff
(98.6 %id)
CB051214 Prostate .b 763 to 1177 415 to 1       415/417
(99 %)
8 diff
(98.1 %id)
AI278904 adenocarcinoma, colon .b 787 to 1245 459 to 1   tiling clone,   459/459
(100 %)
0 diff
(100 %id)
W58146 heart .b 788 to 1236 1 to 453   fully sequenced,   453/453
(100 %)
8 diff
(98.3 %id)
AI185223 lung .b 791 to 1245 455 to 2       454/455
(99 %)
0 diff
(100 %id)
BE260165 brain, neuroblastoma .b 791 to 1244 1 to 454   AAA   454/454
(100 %)
2 diff
(99.6 %id)
AA207074 germinal center B cell .b 795 to 1247 451 to 1   fully sequenced,   451/451
(100 %)
6 diff
(98.7 %id)
AI167339 senescent fibroblast .b 801 to 1245 449 to 5       445/449
(99 %)
0 diff
(100 %id)
AA805191 germinal center B cell .b 818 to 1168 350 to 1       350/350
(100 %)
4 diff
(98.9 %id)
AW977817   .b 819 to 1243 425 to 1     Submitted on the opposite strand 425/425
(100 %)
4 diff
(99.1 %id)
AI568294 lymph node, lymphoma, follicular mixed small and largecell .b 823 to 1244 422 to 1       422/422
(100 %)
1 diff
(99.8 %id)
AA808240 germinal center B cell .b 841 to 1244 421 to 19   AAA   403/403
(100 %)
2 diff
(99.6 %id)
AA731735 germinal center B cell .b 842 to 1245 412 to 9       404/412
(98 %)
0 diff
(100 %id)
AA836392 germinal center B cell .b 842 to 1244 450 to 49   AAA   402/402
(100 %)
3 diff
(99.3 %id)
BQ380653 uterus_tumor .b 845 to 1212 1 to 368       368/368
(100 %)
8 diff
(97.9 %id)
CV379310 bladder_tumor .b 847 to 1213 11 to 370       360/370
(97 %)
6 diff
(98.4 %id)
AA654227 epithelium (cell line), Prostate .b 866 to 1244 396 to 21   AAA   376/376
(100 %)
5 diff
(98.7 %id)
AI223962 lymph node, lymphoma, follicular mixed small and largecell .b 868 to 1245 386 to 9       378/386
(97 %)
0 diff
(100 %id)
AA287647.
matches multiple genes
germinal center B cell .b 869 to 1244 376 to 1     also hits gene FIBP 376/376
(100 %)
2 diff
(99.5 %id)
AI168061 senescent fibroblast .b 869 to 1244 386 to 11   AAA   376/376
(100 %)
2 diff
(99.5 %id)
BI010226 leiomios .b 873 to 1212 42 to 377       336/377
(89 %)
6 diff
(98.5 %id)
BQ301039 bladder_tumor .b 873 to 1212 42 to 377       336/377
(89 %)
6 diff
(98.5 %id)
AW444783   .b 877 to 1243 384 to 18   AAA   367/368
(99 %)
5 diff
(98.7 %id)
BG924930 cartilage .b 878 to 1245 81 to 448       368/387
(95 %)
4 diff
(99.0 %id)
BX451853 neuroblastoma .b 887 to 1245 12 to 366       355/366
(96 %)
6 diff
(98.4 %id)
BX451854 neuroblastoma .b 887 to 1245 12 to 365       354/365
(96 %)
6 diff
(98.4 %id)
AI433842 Kidney .b 911 to 1245 337 to 3       335/337
(99 %)
0 diff
(100 %id)
W57925 heart .b 973 to 1246 276 to 1   fully sequenced,   276/276
(100 %)
2 diff
(99.3 %id)
DB159276 thymus .c 1 to 592 2 to 593 exact tiling clone, capped   592/592
(100 %)
0 diff
(100 %id)
NM_001010974.1   .d 1 to 1109 1 to 1109 exact RefSeq, AAA   1109/1109
(100 %)
0 diff
(100 %id)
AJ511266   .d 141 to 505 1 to 365   tiling clone,   365/365
(100 %)
0 diff
(100 %id)
CN332497 embryonic stem cells, cell lines H1, H7, andH9 .d 143 to 816 1 to 674   tiling clone,   674/674
(100 %)
3 diff
(99.6 %id)
AL449749 brain .d 195 to 417 31 to 253       223/254
(87 %)
7 diff
(97.3 %id)
AL449750 brain .d 195 to 386 192 to 1       192/258
(74 %)
1 diff
(99.7 %id)
AL449898 lung .d 249 to 417 31 to 199       169/200
(84 %)
7 diff
(96.5 %id)
AL449899 lung .d 249 to 385 137 to 1       137/203
(67 %)
0 diff
(100 %id)
BE907320 epithelioid carcinoma, Pancreas .d 336 to 1009 1 to 658       658/870
(75 %)
36 diff
(95.9 %id)
TI_149292592   .d 418 to 1109 766 to 78   AAA   689/708
(97 %)
2 diff
(99.8 %id)
BQ333980 marrow .d 419 to 623 16 to 219       204/236
(86 %)
11 diff
(95.4 %id)
BM974671 lung .d 428 to 1109 698 to 19   AAA   680/680
(100 %)
2 diff
(99.8 %id)
BU608645 Human Lung Epithelial cells, lung .d 428 to 1109 700 to 19   tiling clone, AAA   682/682
(100 %)
1 diff
(99.9 %id)
AW885950 ovary .d 539 to 1103 573 to 9       565/573
(98 %)
0 diff
(100 %id)
CR744247 pooled germ cell tumors .d 605 to 1008 1 to 404       404/406
(99 %)
3 diff
(99.3 %id)
BE503623 carcinoid, lung .d 610 to 1073 1 to 464     Submitted on the opposite strand 464/464
(100 %)
0 diff
(100 %id)
BE645927 Prostate .d 612 to 1109 498 to 1       498/498
(100 %)
2 diff
(99.6 %id)
BG149410 carcinoid, lung .d 614 to 1039 1 to 426     Submitted on the opposite strand 426/426
(100 %)
0 diff
(100 %id)
BE674656 carcinoid, lung .d 618 to 1063 1 to 446     Submitted on the opposite strand 446/446
(100 %)
4 diff
(99.2 %id)
BF432740 carcinoid, lung .d 618 to 1053 1 to 436     Submitted on the opposite strand 436/436
(100 %)
0 diff
(100 %id)
BG153425 carcinoid, lung .d 618 to 1040 1 to 425     Submitted on the opposite strand 425/425
(100 %)
3 diff
(99.3 %id)
AA977251 carcinoid, lung .d 622 to 960 1 to 339     Submitted on the opposite strand 339/339
(100 %)
3 diff
(99.2 %id)
AI299169 carcinoid, lung .d 628 to 1039 1 to 412     Submitted on the opposite strand 412/412
(100 %)
0 diff
(100 %id)
AI339942 carcinoid, lung .d 628 to 1088 1 to 460     Submitted on the opposite strand 460/460
(100 %)
2 diff
(99.6 %id)
BE222540 carcinoid, lung .d 628 to 1039 1 to 412     Submitted on the opposite strand 412/412
(100 %)
0 diff
(100 %id)
BE504601 carcinoid, lung .d 628 to 1069 1 to 441     Submitted on the opposite strand 441/442
(99 %)
3 diff
(99.4 %id)
BX101721 senescent fibroblast .d 635 to 1107 1 to 473       473/473
(100 %)
2 diff
(99.6 %id)
BE466588 pooled germ cell tumors .d 638 to 1109 473 to 1       473/479
(98 %)
2 diff
(99.6 %id)
CA455224   .e 1 to 815 1 to 823 exact tiling clone,   823/915
(89 %)
16 diff
(98.3 %id)
CR746367 brain .f 1 to 512 1 to 512 exact     512/512
(100 %)
0 diff
(100 %id)
BC056883 Brain, adult, 6 pooled whole brains .f 1 to 1497 1 to 1497 exact tiling clone, available from MGC, AAA   1497/1497
(100 %)
1 diff
(100.0 %id)
BM926134 brain .f 2 to 680 1 to 680 exact tiling clone, available from MGC,   680/1055
(64 %)
7 diff
(99.4 %id)
BC112282 Cerebellum, Uterus, Testis, PCR rescuedclones .f 333 to 516 184 to 1     Submitted on the opposite strand 184/184
(100 %)
0 diff
(100 %id)
AA283348   .f 350 to 454 104 to 1       104/150
(69 %)
2 diff
(98.7 %id)
BU169883 embryonal carcinoma, cell line, testis .f 1382 to 2083 1 to 710   tiling clone,   710/911
(77 %)
13 diff
(98.6 %id)
AA465261 germinal center B cell Gene BCAS4, variant not shown         This clone was ignored    
AI819741 2 pooled tumors (clear cell type), Kidney Gene BCAS4, variant not shown       AAA Suspected internal deletion, internal priming: the 3' end of the oligo dt primed clone lies in the CDS, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC