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Gene BBOX1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
154 supporting clones for gene BBOX1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG425948 Kidney .a 1 to 744 5 to 728       728/829
(87 %)
34 diff
(95.9 %id)
DA630678 Kidney .a 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)
2 diff
(99.7 %id)
BG399125 Kidney .a 75 to 745 1 to 672       672/871
(77 %)
15 diff
(98.3 %id)
DQ471864 Kidney .a 78 to 293 1 to 216       216/216
(100 %)
0 diff
(100 %id)
DQ471865 Kidney .a 78 to 293 1 to 216       216/216
(100 %)
0 diff
(100 %id)
DQ471858 Liver .a 81 to 293 1 to 213       213/213
(100 %)
0 diff
(100 %id)
DQ471859 Liver .a 116 to 293 1 to 178       178/178
(100 %)
0 diff
(100 %id)
DQ471860 Liver .a 129 to 293 1 to 165       165/165
(100 %)
0 diff
(100 %id)
BP275817 Kidney .a 132 to 693 1 to 562   tiling clone,   562/562
(100 %)
4 diff
(99.3 %id)
DQ471861 Liver .a 136 to 293 1 to 158       158/158
(100 %)
0 diff
(100 %id)
DA627502 Kidney .a 137 to 684 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
BG433251 Kidney .a 143 to 887 1 to 746       746/746
(100 %)
22 diff
(97.1 %id)
BG426748 Kidney .a 150 to 692 1 to 548       545/779
(69 %)
17 diff
(97.9 %id)
DQ471862 Liver .a 151 to 293 1 to 143       143/143
(100 %)
0 diff
(100 %id)
DQ471866 Kidney .a 151 to 293 1 to 143       143/143
(100 %)
0 diff
(100 %id)
DQ471867 Kidney .a 154 to 293 1 to 140       140/140
(100 %)
0 diff
(100 %id)
BC011034 Kidney .a 159 to 1593 4 to 1438 exact tiling clone, available from MGC, AAA   1435/1435
(100 %)
4 diff
(99.8 %id)
DQ471863 Liver .a 162 to 293 1 to 132       132/132
(100 %)
0 diff
(100 %id)
DQ471868 Kidney .a 162 to 293 1 to 132       132/132
(100 %)
0 diff
(100 %id)
DA632458 Kidney .b 1 to 569 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
NM_003986.2   .b 129 to 2014 1 to 1886 exact RefSeq, AAA   1886/1886
(100 %)
1 diff
(100.0 %id)
DA668214 esophagus .b 165 to 684 2 to 521   capped   520/527
(98 %)
6 diff
(98.9 %id)
DT215457 brain .b 272 to 791 1 to 515       515/515
(100 %)
7 diff
(98.7 %id)
DT215551 brain .b 273 to 792 1 to 517       517/517
(100 %)
7 diff
(98.7 %id)
DQ471856 brain .b 355 to 578 1 to 224       224/224
(100 %)
1 diff
(99.6 %id)
DA074515 cerebellum .b 356 to 916 2 to 562   tiling clone, capped   561/561
(100 %)
3 diff
(99.5 %id)
BP210528 cerebellum .b 373 to 949 1 to 577       577/577
(100 %)
3 diff
(99.5 %id)
BM546501 brain, hippocampus .b 380 to 1293 1 to 925       925/1165
(79 %)
35 diff
(97.0 %id)
AK313422 cerebellum .b 381 to 1660 1 to 1280 exact     1280/1280
(100 %)
3 diff
(99.8 %id)
DQ471857 brain .b 381 to 578 1 to 198       198/198
(100 %)
1 diff
(99.5 %id)
DA081962 cerebellum .b 382 to 946 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
AA349652 brain .b 394 to 815 1 to 423       423/423
(100 %)
2 diff
(99.6 %id)
R17519 whole brain .b 395 to 764 1 to 378       378/380
(99 %)
17 diff
(95.6 %id)
AF082868 Liver .b 431 to 2014 1 to 1584 exact tiling clone, AAA   1584/1584
(100 %)
3 diff
(99.9 %id)
BF105133 Kidney .b 464 to 1024 1 to 559       559/561
(99 %)
11 diff
(98.1 %id)
BG432111 Kidney .b 467 to 1263 1 to 804       804/844
(95 %)
30 diff
(96.5 %id)
BG426974 Kidney .b 492 to 1337 1 to 844       844/852
(99 %)
32 diff
(96.3 %id)
TI_1948092966   .b 496 to 1166 138 to 808   fully sequenced,   671/808
(83 %)
7 diff
(99.2 %id)
TI_1948093118   .b 496 to 1166 133 to 803   fully sequenced,   671/803
(83 %)
7 diff
(99.2 %id)
TI_1948093284   .b 496 to 1343 132 to 977       846/1438
(58 %)
20 diff
(98.7 %id)
TI_1948093429   .b 496 to 1097 131 to 732   fully sequenced,   602/732
(82 %)
7 diff
(99.1 %id)
DA132330 alzheimer cortex .b 497 to 1063 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
CR456812   .b 497 to 1656 1 to 1160   tiling clone,   1160/1164
(99 %)
3 diff
(99.8 %id)
CV027907 mixed .b 497 to 1137 1 to 635       635/636
(99 %)
9 diff
(98.6 %id)
BF105217 Kidney .b 510 to 1162 1 to 645       645/685
(94 %)
24 diff
(96.5 %id)
CR737012 Kidney .b 537 to 1015 1 to 479       479/479
(100 %)
2 diff
(99.6 %id)
BG573256 placenta .b 544 to 1329 1 to 786       786/788
(99 %)
7 diff
(99.2 %id)
F12772 brain, total brain .b 566 to 900 1 to 335       335/335
(100 %)
1 diff
(99.8 %id)
R18626 whole brain .b 567 to 905 1 to 342       342/354
(96 %)
5 diff
(98.6 %id)
BF104790 Kidney .b 594 to 1237 1 to 637       637/812
(78 %)
31 diff
(96.2 %id)
F05274 brain, total brain .b 747 to 915 1 to 169       169/169
(100 %)
0 diff
(100 %id)
F05832 brain, total brain .b 770 to 1056 1 to 288       288/288
(100 %)
3 diff
(99.0 %id)
R20158 whole brain .b 771 to 1136 1 to 380       380/446
(85 %)
19 diff
(95.8 %id)
CB154082 Liver .b 953 to 1546 1 to 594   tiling clone,   594/594
(100 %)
0 diff
(100 %id)
TI_1948093430   .b 1067 to 1659 713 to 121   fully sequenced,   593/713
(83 %)
1 diff
(99.9 %id)
AW195674 Kidney .b 1097 to 1882 785 to 1       785/785
(100 %)
10 diff
(98.8 %id)
TI_1948092967   .b 1105 to 1659 677 to 123   fully sequenced,   555/677
(81 %)
1 diff
(99.9 %id)
TI_1948093119   .b 1105 to 1659 676 to 122   fully sequenced,   555/676
(82 %)
1 diff
(99.9 %id)
AW195682 Kidney .b 1135 to 1882 748 to 1       748/768
(97 %)
7 diff
(99.1 %id)
W77917 heart .b 1182 to 1559 1 to 380   fully sequenced,   380/380
(100 %)
1 diff
(99.8 %id)
TI_149281116   .b 1187 to 1880 772 to 80   AAA   693/717
(96 %)
7 diff
(99.1 %id)
BX095825 whole brain .b 1208 to 1884 690 to 15   AAA   676/676
(100 %)
2 diff
(99.8 %id)
BM983309 lung, Primary Lung Epithelial Cells .b 1231 to 1880 668 to 19   AAA   650/650
(100 %)
1 diff
(99.9 %id)
AW300383 Kidney .b 1259 to 1880 631 to 10       622/631
(98 %)
1 diff
(99.9 %id)
CA311597 Human Lung Epithelial cells, lung .b 1266 to 1878 631 to 19   AAA   613/613
(100 %)
0 diff
(100 %id)
AI911566 Kidney .b 1271 to 1885 620 to 6       615/620
(99 %)
0 diff
(100 %id)
BI490816 pooled brain, lung, testis .b 1287 to 1811 539 to 1       539/544
(99 %)
16 diff
(97.1 %id)
TI_43960739   .b 1287 to 1811 539 to 1       539/544
(99 %)
16 diff
(97.1 %id)
AW238349 carcinoma in situ from retromolar trigone .b 1334 to 1884 569 to 19   AAA   551/551
(100 %)
0 diff
(100 %id)
AI478568 Kidney .b 1346 to 1880 543 to 9       535/543
(98 %)
3 diff
(99.5 %id)
AW021643 cochlea, ear .b 1349 to 1836 6 to 494       489/494
(98 %)
7 diff
(98.6 %id)
DB299424.
matches multiple genes
cerebellum .b 1352 to 1884 533 to 1     also hits gene hata 533/533
(100 %)
2 diff
(99.7 %id)
AI985559 Kidney .b 1361 to 1882 523 to 3       521/526
(99 %)
7 diff
(98.7 %id)
AI333212 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1375 to 1879 506 to 2       505/508
(99 %)
1 diff
(99.9 %id)
AI248514 liver and spleen .b 1394 to 1878 485 to 1       485/485
(100 %)
0 diff
(100 %id)
AW103752 ovary, tumor, 5 pooled (see description) .b 1409 to 1885 480 to 4       477/480
(99 %)
3 diff
(99.4 %id)
N50838 multiple sclerosis lesions .b 1414 to 1880 469 to 1       469/469
(100 %)
5 diff
(99.0 %id)
AI766233 Kidney .b 1422 to 1878 457 to 1       457/457
(100 %)
4 diff
(99.2 %id)
AI521872 Kidney .b 1427 to 1878 453 to 2       452/453
(99 %)
0 diff
(100 %id)
AI796574 Kidney .b 1427 to 1878 456 to 5       452/456
(99 %)
0 diff
(100 %id)
AI522126 Kidney .b 1436 to 1883 450 to 3       448/450
(99 %)
0 diff
(100 %id)
BF431275 Kidney .b 1439 to 1882 447 to 3       445/447
(99 %)
8 diff
(98.3 %id)
BF592163 Kidney .b 1439 to 1882 444 to 1       444/444
(100 %)
0 diff
(100 %id)
BP275360 Kidney .b 1446 to 1884 1 to 439   AAA   439/439
(100 %)
1 diff
(99.8 %id)
AI147527 Kidney .b 1449 to 1880 443 to 12   AAA   432/432
(100 %)
0 diff
(100 %id)
AA948672 2 pooled tumors (clear cell type), Kidney .b 1462 to 1885 431 to 9       423/431
(98 %)
1 diff
(99.8 %id)
BF431171 Kidney .b 1466 to 1881 416 to 1       416/428
(97 %)
6 diff
(98.6 %id)
AI524816 Kidney .b 1476 to 1883 408 to 1       408/408
(100 %)
0 diff
(100 %id)
AA863059 2 pooled tumors (clear cell type), Kidney .b 1482 to 1881 402 to 5       398/406
(98 %)
1 diff
(99.8 %id)
AI863540 Kidney .b 1484 to 1884 414 to 14   AAA   401/401
(100 %)
3 diff
(99.3 %id)
AI695345 Kidney .b 1498 to 1773 274 to 1       274/282
(97 %)
4 diff
(98.6 %id)
AW779315 Kidney .b 1498 to 1880 385 to 1       385/387
(99 %)
8 diff
(98.0 %id)
AI766276 Kidney .b 1499 to 1884 406 to 22   AAA   385/385
(100 %)
25 diff
(93.6 %id)
BF085301 placenta_normal .b 1501 to 1770 278 to 10       269/280
(96 %)
0 diff
(100 %id)
R44944 whole brain .b 1520 to 1884 392 to 14   AAA   379/433
(87 %)
18 diff
(95.9 %id)
DB563403 hypothalamus .b 1521 to 1884 1 to 362   AAA Submitted on the opposite strand 362/362
(100 %)
22 diff
(94.0 %id)
CB046445 2 pooled tumors (clear cell type), Kidney .b 1522 to 1884 24 to 386   AAA   363/386
(94 %)
5 diff
(98.8 %id)
AW205454   .b 1524 to 1878 373 to 18   AAA   356/364
(97 %)
2 diff
(99.5 %id)
W72099 heart .b 1529 to 1881 382 to 30   fully sequenced, AAA   353/353
(100 %)
0 diff
(100 %id)
AI934912 2 pooled tumors (clear cell type), Kidney .b 1534 to 2006 473 to 1       473/473
(100 %)
0 diff
(100 %id)
R41886 whole brain .b 1538 to 1878 358 to 11   AAA   348/387
(89 %)
7 diff
(98.2 %id)
BE552452 Kidney .b 1538 to 1881 345 to 2       344/345
(99 %)
0 diff
(100 %id)
AI935678 Kidney .b 1542 to 1633 93 to 1       93/94
(98 %)
4 diff
(95.8 %id)
AW013813   .b 1550 to 2007 475 to 18   AAA   458/458
(100 %)
1 diff
(99.8 %id)
AI470904 Kidney .b 1571 to 1878 308 to 1       308/308
(100 %)
0 diff
(100 %id)
AA455988 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 1583 to 1884 315 to 15   AAA   301/301
(100 %)
1 diff
(99.7 %id)
AW779554 Kidney .b 1596 to 1880 285 to 1       285/285
(100 %)
1 diff
(99.7 %id)
BF594754 Kidney .b 1596 to 1883 293 to 6       288/293
(98 %)
0 diff
(100 %id)
AI953343 Kidney .b 1606 to 1880 285 to 11   AAA   275/275
(100 %)
1 diff
(99.7 %id)
F02079 brain, total brain .b 1635 to 1884 249 to 1       249/249
(100 %)
1 diff
(99.6 %id)
AI470899 Kidney .b 1640 to 1878 239 to 1       239/239
(100 %)
0 diff
(100 %id)
AA977526 Kidney .b 1645 to 2015 371 to 1   tiling clone,   371/371
(100 %)
1 diff
(99.8 %id)
AA694319 liver and spleen .b 1653 to 1991 339 to 1       339/339
(100 %)
0 diff
(100 %id)
F01527 brain, total brain .b 1658 to 1880 222 to 1       222/222
(100 %)
1 diff
(99.6 %id)
DQ471869   .b 1658 to 1883 1 to 226   AAA   226/226
(100 %)
0 diff
(100 %id)
DQ471870   .b 1658 to 2014 1 to 357   AAA   357/357
(100 %)
0 diff
(100 %id)
R41594 whole brain .b 1675 to 2014 356 to 15   AAA   342/344
(99 %)
18 diff
(94.8 %id)
AA829592 ovary .b 1676 to 1880 213 to 9       205/220
(93 %)
0 diff
(100 %id)
R43657 whole brain .b 1701 to 2014 332 to 16   AAA   317/320
(99 %)
4 diff
(98.8 %id)
F10380 brain, total brain .b 1786 to 2014 229 to 1       229/229
(100 %)
2 diff
(99.2 %id)
DA917720 small intestine .c 1 to 558 2 to 560   tiling clone, capped   559/559
(100 %)
3 diff
(99.5 %id)
AW134614   .c 15 to 314 318 to 19   tiling clone,   300/328
(91 %)
0 diff
(100 %id)
AL703415 human skeletal muscle .c 220 to 820 1 to 601   tiling clone,   601/601
(100 %)
4 diff
(99.4 %id)
BP225861   .c 354 to 935 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
CB985702 Pooled-Glandular .c 422 to 1234 1 to 821       821/821
(100 %)
18 diff
(97.9 %id)
BP307601 brain .c 459 to 1086 1 to 628       628/628
(100 %)
6 diff
(99.1 %id)
BF967174 brain, hypothalamus .c 473 to 1189 1 to 721       721/724
(99 %)
21 diff
(97.1 %id)
BI667308 brain, hypothalamus .c 473 to 1364 1 to 886       886/895
(98 %)
36 diff
(96.0 %id)
BI667634 brain, hypothalamus .c 473 to 1246 1 to 778       778/779
(99 %)
12 diff
(98.5 %id)
DT218363 brain .c 474 to 1084 1 to 611   tiling clone,   611/611
(100 %)
1 diff
(99.9 %id)
DB492419 hypothalamus .c 478 to 735 1 to 258       258/258
(100 %)
8 diff
(96.9 %id)
TI_44343593   .c 478 to 1246 90 to 862       773/863
(89 %)
13 diff
(98.5 %id)
TI_44343657   .c 478 to 1364 62 to 942       881/951
(92 %)
37 diff
(96.2 %id)
DT215618 brain .c 479 to 1208 1 to 730       730/730
(100 %)
2 diff
(99.8 %id)
DT215733 brain .c 479 to 1067 1 to 589       589/589
(100 %)
2 diff
(99.7 %id)
BG705437 brain, hippocampus .c 495 to 1249 1 to 751       751/751
(100 %)
9 diff
(98.9 %id)
DA142618 alzheimer cortex .c 497 to 1043 2 to 549   capped   548/548
(100 %)
4 diff
(99.3 %id)
BP192748 brain .c 500 to 1082 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BP193806 brain .c 500 to 1082 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
AK290108 subthalamic nucleus .c 500 to 1996 1 to 1497 P30Q tiling clone,   1497/1497
(100 %)
2 diff
(99.9 %id)
DA065621 cerebellum .c 501 to 1059 2 to 561   capped   560/560
(100 %)
4 diff
(99.3 %id)
DA361533 subthalamic nucleus .c 501 to 1052 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA368756 subthalamic nucleus .c 501 to 1054 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
AA323362 brain, cerebellum .c 504 to 828 1 to 329       329/329
(100 %)
7 diff
(97.9 %id)
AW960936   .c 505 to 950 1 to 446       446/529
(84 %)
17 diff
(96.8 %id)
AW960938   .c 505 to 1088 1 to 582       582/584
(99 %)
13 diff
(97.8 %id)
AW960945   .c 505 to 946 1 to 447       447/502
(89 %)
21 diff
(95.9 %id)
DT216231 brain .c 514 to 1165 1 to 652       652/652
(100 %)
6 diff
(99.1 %id)
BI489973 pooled brain, lung, testis .c 514 to 1095 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
TI_43960737   .c 514 to 1095 71 to 652       582/652
(89 %)
9 diff
(98.7 %id)
F08767 brain, total brain .c 533 to 791 10 to 268       259/268
(96 %)
7 diff
(97.4 %id)
DB331774 small intestine .c 1457 to 1998 542 to 1       542/542
(100 %)
0 diff
(100 %id)
Z41801 brain, total brain .c 1712 to 2000 289 to 1   tiling clone,   289/289
(100 %)
0 diff
(100 %id)
BG431002 Kidney .d 1 to 611 9 to 616 W90G L91* tiling clone,   616/616
(100 %)
5 diff
(99.2 %id)
AI733708 Kidney .d 609 to 1198 595 to 7   tiling clone,   589/597
(98 %)
0 diff
(100 %id)
AI222515 Kidney .d 827 to 1198 378 to 7       372/378
(98 %)
0 diff
(100 %id)
AI222516 Kidney .d 860 to 1184 345 to 21       325/345
(94 %)
0 diff
(100 %id)
DA268467 caudate nucleus .e 1 to 571 2 to 572   tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
DB192340 ovary, tumor tissue .e 38 to 581 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
AW271289 Kidney .e 359 to 817 459 to 1 C142R tiling clone,   459/459
(100 %)
3 diff
(99.4 %id)
AW271298 Kidney .e 361 to 817 457 to 1 L141P tiling clone,   457/457
(100 %)
3 diff
(99.4 %id)
AI023834   .f 1 to 457 456 to 1 Q32R G33A H34T S35V E36K ... tiling clone,   456/456
(100 %)
1 diff
(99.8 %id)
AI024146   .f 251 to 457 207 to 1       207/210
(98 %)
0 diff
(100 %id)
AV659477 corresponding non cancerous liver tissue Gene BBOX1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV659520 corresponding non cancerous liver tissue Gene BBOX1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BG433722 Kidney Gene BBOX1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI