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Gene BARX1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
31 supporting clones for gene BARX1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Features Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM806606 leiomyosarcoma, uterus .a 1 to 587 4 to 590 tiling clone, 587/1210
(48 %)
24 diff
(98.1 %id)
CR592249 HeLa cells Cot 25-normalized .a 7 to 1507 1 to 1501 tiling clone, 1501/1501
(100 %)
0 diff
(100 %id)
AL555424 placenta .a 7 to 805 1 to 799 fully sequenced, 799/799
(100 %)
8 diff
(99.0 %id)
BC064363 Uterus, leiomyosarcoma .a 8 to 1532 1 to 1525 tiling clone, available from MGC, AAA 1525/1525
(100 %)
1 diff
(100.0 %id)
NM_021570.3   .a 53 to 1532 1 to 1480 RefSeq, AAA 1480/1480
(100 %)
0 diff
(100 %id)
AF213356 craniofacial tissue .a 56 to 1534 1 to 1468   1468/1469
(99 %)
42 diff
(97.2 %id)
BM474284 leiomyosarcoma, uterus .a 113 to 517 3 to 407   405/1202
(33 %)
11 diff
(99.1 %id)
BF683834 leiomyosarcoma cell line, uterus .a 328 to 828 1 to 502   502/816
(61 %)
4 diff
(99.6 %id)
BF237878 leiomyosarcoma cell line, uterus .a 334 to 817 1 to 490   490/950
(51 %)
13 diff
(98.7 %id)
BM453164 leiomyosarcoma, uterus .a 448 to 1263 1 to 823   823/1052
(78 %)
34 diff
(96.8 %id)
BF981618 duodenal adenocarcinoma, cell line, small intestine .a 507 to 874 1 to 367   367/367
(100 %)
1 diff
(99.8 %id)
CV030077 mixed .a 695 to 996 1 to 302   302/488
(61 %)
2 diff
(99.6 %id)
AL577926 placenta .a 775 to 1479 729 to 28 fully sequenced, 702/729
(96 %)
0 diff
(100 %id)
BU624499 cell lines, Enchondroma .a 779 to 1539 779 to 19 AAA 761/761
(100 %)
1 diff
(99.9 %id)
BG896578 cartilage .a 795 to 1308 84 to 597   514/529
(97 %)
7 diff
(98.7 %id)
BE883480 leiomyosarcoma, uterus .a 868 to 1525 1 to 653   653/653
(100 %)
8 diff
(98.8 %id)
BX094328   .a 976 to 1532 1 to 558 AAA 558/558
(100 %)
4 diff
(99.3 %id)
AA442582   .a 976 to 1221 1 to 244 fully sequenced, 244/244
(100 %)
4 diff
(98.4 %id)
BE464546 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 1055 to 1532 478 to 1   478/478
(100 %)
0 diff
(100 %id)
AI459280 carcinoid, lung .a 1087 to 1534 449 to 2   448/449
(99 %)
0 diff
(100 %id)
AI623151 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1104 to 1532 429 to 1   429/429
(100 %)
0 diff
(100 %id)
AW514391 lung, two pooled squamous cell carcinomas .a 1104 to 1532 429 to 1   429/429
(100 %)
0 diff
(100 %id)
BE544095 cervical carcinoma cell line, cervix .a 1128 to 1533 1 to 401   401/436
(91 %)
14 diff
(96.8 %id)
AI695071 carcinoid, lung .a 1137 to 1534 397 to 2   396/397
(99 %)
0 diff
(100 %id)
BM738686 stomach .a 1148 to 1504 1 to 358   358/358
(100 %)
1 diff
(99.8 %id)
AI440279 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1173 to 1532 360 to 1   360/360
(100 %)
2 diff
(99.5 %id)
AI445581 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1180 to 1534 355 to 1   355/355
(100 %)
0 diff
(100 %id)
AA436825   .a 1191 to 1535 342 to 1 fully sequenced, 342/342
(100 %)
12 diff
(96.5 %id)
AI292221 carcinoid, lung .a 1191 to 1532 342 to 1   342/342
(100 %)
3 diff
(99.2 %id)
AW080112 esophagus, squamous cell carcinoma .a 1248 to 1532 287 to 1   287/287
(100 %)
7 diff
(97.6 %id)
AW130310 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 1337 to 1534 199 to 2   198/199
(99 %)
0 diff
(100 %id)
BC009458 Lung, small cell carcinoma .b 1 to 1327 1 to 1327 tiling clone, available from MGC, AAA 1327/1327
(100 %)
5 diff
(99.7 %id)
BE266464 lung, small cell carcinoma .b 20 to 630 1 to 609 available from MGC, 609/731
(83 %)
10 diff
(98.7 %id)
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC