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Gene BANF1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
549 supporting clones for gene BANF1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB053186 testis .a-u 1 to 213 3 to 216   tiling clone, capped   215/215
(100 %)
1 diff
(99.6 %id)
BY995619   .a-u 443 to 1065 10 to 632   tiling clone,   623/632
(98 %)
6 diff
(99.1 %id)
BI037729 nervous_tumor .a-u 942 to 1389 1 to 447   tiling clone,   447/447
(100 %)
11 diff
(97.6 %id)
BI039655 nervous_tumor .a-u 942 to 1389 1 to 447       447/447
(100 %)
11 diff
(97.6 %id)
BQ327659 kidney_tumor .a-u 943 to 1239 19 to 308   tiling clone,   290/308
(94 %)
6 diff
(98.1 %id)
DB338719 testis .a-u 1106 to 1632 527 to 1   tiling clone,   527/527
(100 %)
1 diff
(99.9 %id)
BM906013 ovary (pool of 3) .b 1 to 714 12 to 744   tiling clone,   733/1300
(56 %)
29 diff
(97.8 %id)
BX422680 fetal liver, Liver .b 69 to 552 1 to 480       480/480
(100 %)
11 diff
(97.8 %id)
BX447399 fetal liver, Liver .b 69 to 558 1 to 486       486/624
(77 %)
9 diff
(98.6 %id)
BG740295 skin .b 145 to 862 1 to 734   tiling clone,   734/895
(82 %)
35 diff
(96.1 %id)
BF857034 prostate_tumor .b 283 to 413 130 to 4     Submitted on the opposite strand 127/130
(97 %)
0 diff
(100 %id)
BG120942 adenocarcinoma, cell line, Liver .b 396 to 1148 14 to 770 F39L D40T K41R A42P Y43M ... tiling clone,   755/900
(83 %)
29 diff
(96.8 %id)
AW880508 ovary .c 1 to 383 1 to 382 I7L K8S P9L D10I Q11K ... tiling clone,   382/382
(100 %)
2 diff
(99.5 %id)
DB045314 testis .d 1 to 560 2 to 561   tiling clone, capped   560/560
(100 %)
2 diff
(99.7 %id)
FN130757 breast carcinoma .d 368 to 473 1 to 105       105/109
(96 %)
2 diff
(98.2 %id)
AF068235   .d 442 to 1592 1 to 1150 exact tiling clone, AAA   1150/1150
(100 %)
3 diff
(99.8 %id)
NM_003860.3   .d 442 to 1592 1 to 1151 exact RefSeq, AAA   1151/1151
(100 %)
0 diff
(100 %id)
CR611359 B cells (Ramos cell line) Cot 25-normalized .d 619 to 1593 1 to 975 exact tiling clone,   975/975
(100 %)
0 diff
(100 %id)
BX364123   .d 619 to 1593 1 to 975 exact fully sequenced,   975/975
(100 %)
6 diff
(99.4 %id)
FN057929 breast carcinoma .d 624 to 700 1 to 77       77/79
(97 %)
4 diff
(95.0 %id)
BG260314 bladder, transitional cell papilloma, cell line .d 629 to 1309 1 to 681 exact     681/681
(100 %)
3 diff
(99.6 %id)
BP418396 small intestine .d 634 to 1193 1 to 560     Submitted on the opposite strand 560/560
(100 %)
2 diff
(99.7 %id)
AW247669 lung, small cell carcinoma .d 634 to 821 20 to 207       188/207
(90 %)
6 diff
(97.2 %id)
BG256286 adenocarcinoma, cell line, Prostate .d 638 to 1396 1 to 753 exact     753/928
(81 %)
21 diff
(97.8 %id)
AA181592   .d 649 to 870 1 to 222       222/222
(100 %)
8 diff
(96.4 %id)
BG748852 eye, normal pigmented retinal epithelium .d 659 to 1467 1 to 816 F39L D40T V51G L52A K54E ...     816/816
(100 %)
23 diff
(97.2 %id)
BG682688 skin, squamous cell carcinoma .d 679 to 1452 1 to 769 R37T D40*     769/771
(99 %)
15 diff
(98.1 %id)
BE539858 cervix .d 751 to 1285 1 to 548 I26M E35G E36G R37T F39V ...     548/548
(100 %)
16 diff
(97.1 %id)
BG106089 lymph, lymphoma, cell line .d 754 to 1448 20 to 708 exact     689/972
(70 %)
11 diff
(98.9 %id)
TI_154128396   .d 757 to 1592 907 to 86 exact AAA   822/982
(83 %)
16 diff
(98.4 %id)
CN400283 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 805 to 1423 1 to 619 exact     619/622
(99 %)
3 diff
(99.6 %id)
BP250213 hippocampus .d 819 to 1415 1 to 596 exact     596/596
(100 %)
1 diff
(99.9 %id)
BU955450 mixed (pool of 40 RNAs) .d 832 to 1597 1 to 775 D9Y     775/820
(94 %)
41 diff
(95.0 %id)
BU598764 mixed (pool of 40 RNAs) .d 842 to 1535 1 to 701 exact     701/881
(79 %)
24 diff
(97.3 %id)
AV762460 bone marrow .d 847 to 1356 1 to 507 exact     507/680
(74 %)
7 diff
(99.0 %id)
AV760279 bone marrow .d 848 to 1295 1 to 439 Q5R K6T H7E R8T D9S ...     439/440
(99 %)
6 diff
(98.7 %id)
BG119494 adenocarcinoma, cell line, Liver .d 849 to 1489 1 to 640 exact     640/912
(70 %)
11 diff
(98.8 %id)
BP430650   .d 849 to 1191 1 to 345       345/345
(100 %)
7 diff
(98.0 %id)
CD706460 normal nasopharynx .d 853 to 1383 31 to 561 exact     531/561
(94 %)
6 diff
(99.0 %id)
BF317099 brain, neuroblastoma .d 853 to 1591 1 to 737 F39L D40T K41R A42P Y43M ... AAA   737/737
(100 %)
14 diff
(98.2 %id)
BG258836 embryonal carcinoma, cell line, testis .d 853 to 1591 1 to 736 F39L D40T K41R A42P Y43M ...     736/756
(97 %)
16 diff
(97.9 %id)
BU594593 mixed (pool of 40 RNAs) .d 853 to 1541 1 to 698 exact     698/832
(83 %)
25 diff
(97.0 %id)
R48677 breast .d 855 to 1182 1 to 327       327/327
(100 %)
9 diff
(97.3 %id)
BG611213 adenocarcinoma, Prostate .d 855 to 1491 1 to 637 exact     637/637
(100 %)
12 diff
(98.2 %id)
CK002241 brain/CNS, Bulk tissue from Human Spinal cord .d 855 to 1511 1 to 653 exact     653/653
(100 %)
10 diff
(98.5 %id)
CK002205 brain/CNS, Bulk tissue from Human Spinal cord .d 855 to 1532 1 to 674 exact     674/674
(100 %)
6 diff
(99.2 %id)
T86590 liver and spleen .d 856 to 1183 1 to 330       330/369
(89 %)
16 diff
(95.7 %id)
W38866 parathyroid gland, parathyroid tumor .d 856 to 1172 1 to 316   fully sequenced,   316/316
(100 %)
7 diff
(97.8 %id)
BF307824 muscle, rhabdomyosarcoma .d 856 to 1575 1 to 700 I26M G27V E28K V29S L30W ...     700/829
(84 %)
36 diff
(95.7 %id)
BG284451 adenocarcinoma, cell line, Prostate .d 856 to 1483 14 to 638 exact     625/670
(93 %)
16 diff
(97.7 %id)
BG324933 Kidney, renal cell adenocarcinoma .d 856 to 1590 1 to 731 exact AAA   731/731
(100 %)
10 diff
(98.7 %id)
BM822921 stomach .d 856 to 1321 1 to 464 exact     464/464
(100 %)
2 diff
(99.6 %id)
BG259688 embryonal carcinoma, cell line, testis .d 857 to 1533 1 to 674 exact     674/936
(72 %)
17 diff
(98.2 %id)
BG819830 anaplastic oligodendroglioma with 1p/19qloss, brain .d 857 to 1490 1 to 632 exact     632/662
(95 %)
12 diff
(98.2 %id)
BP197005 adrenal gland .d 858 to 1441 1 to 579 exact     579/583
(99 %)
9 diff
(98.5 %id)
T83271 liver and spleen .d 858 to 1215 1 to 366       366/371
(98 %)
21 diff
(94.4 %id)
BU598324 mixed (pool of 40 RNAs) .d 860 to 1423 1 to 576 exact     576/860
(66 %)
21 diff
(97.6 %id)
AA130162 uterus .d 861 to 1446 1 to 579 M15W E17R K18S P19Q V20W ...     579/636
(91 %)
15 diff
(97.7 %id)
BG575319 breast, mammary adenocarcinoma, cell line .d 861 to 1593 29 to 764 exact AAA   736/764
(96 %)
26 diff
(96.6 %id)
BU603265 mixed (pool of 40 RNAs) .d 861 to 1591 1 to 737 A12F E13L P14A M15H E17G ...     737/851
(86 %)
31 diff
(96.4 %id)
BG256381 embryonal carcinoma, cell line, testis .d 862 to 1521 1 to 654 I26M G27V E28K V29S L30W ...     654/654
(100 %)
11 diff
(98.4 %id)
AA347144 heart .d 863 to 1154 1 to 292       292/292
(100 %)
3 diff
(99.0 %id)
BC005942 Brain, glioblastoma .d 863 to 1592 1 to 730 exact available from MGC, AAA   730/730
(100 %)
1 diff
(99.9 %id)
BU533147 mixed (pool of 40 RNAs) .d 863 to 1292 1 to 435 A71G     435/1159
(37 %)
12 diff
(99.0 %id)
BU953384 mixed (pool of 40 RNAs) .d 863 to 1535 1 to 691 exact     691/808
(85 %)
34 diff
(95.8 %id)
CB959238 Pooled-Glandular .d 863 to 1492 1 to 645 exact     645/753
(85 %)
26 diff
(96.6 %id)
DA105112 cerebellum .d 864 to 1392 2 to 530 K72E capped   529/529
(100 %)
1 diff
(99.9 %id)
BP226991   .d 864 to 1327 1 to 464 D55N AAA   464/464
(100 %)
5 diff
(99.0 %id)
BG026412 Bone, osteosarcoma, cell line .d 864 to 1616 1 to 752 exact tiling clone, AAA   752/752
(100 %)
15 diff
(98.1 %id)
BU601807 mixed (pool of 40 RNAs) .d 864 to 1542 1 to 685 C85F     685/884
(77 %)
27 diff
(97.0 %id)
BP339324 Spleen .d 864 to 1445 1 to 582 exact     582/582
(100 %)
0 diff
(100 %id)
H19605 brain .d 865 to 1290 1 to 429 M15W E17R K18S P19Q V20W ... fully sequenced,   429/429
(100 %)
17 diff
(96.1 %id)
DB106472 thymus .d 865 to 1425 2 to 562 exact capped   561/561
(100 %)
0 diff
(100 %id)
CD174991 embryonic stem cells, WA01, passage 38 .d 866 to 1594 22 to 750 exact AAA   729/750
(97 %)
6 diff
(99.2 %id)
CD175253 embryonic stem cells, WA01, passage 38 .d 866 to 1592 14 to 740 exact AAA   727/740
(98 %)
6 diff
(99.2 %id)
CD177442 embryonic trophoblasts, made from WA01 stemcells .d 866 to 1592 19 to 745 exact AAA   727/745
(97 %)
6 diff
(99.2 %id)
H49329 brain .d 866 to 1221 1 to 353 M15W E17R K18S P19Q V20W ... fully sequenced,   353/353
(100 %)
6 diff
(98.4 %id)
H50061 brain .d 866 to 1174 1 to 308       308/308
(100 %)
6 diff
(98.1 %id)
BF685406 leiomyosarcoma cell line, uterus .d 866 to 1592 1 to 708 I26M G27V E28K V29S L30W ... AAA   708/708
(100 %)
21 diff
(97.1 %id)
CF129231 Chondrosarcoma Lung Metastasis cell lines, lung .d 866 to 1503 1 to 638 exact     638/638
(100 %)
0 diff
(100 %id)
CB112276 Liver .d 866 to 1434 1 to 569 T3A     569/569
(100 %)
1 diff
(99.9 %id)
TI_154190907   .d 866 to 1592 51 to 776 exact AAA   726/726
(100 %)
6 diff
(99.2 %id)
BF800552 colon_ins .d 867 to 1035 15 to 183       169/183
(92 %)
6 diff
(96.8 %id)
BU599391 mixed (pool of 40 RNAs) .d 867 to 1592 1 to 728 exact     728/823
(88 %)
20 diff
(97.6 %id)
BM700228.
matches multiple genes
eye, lens .d 867 to 1441 1 to 575 exact   also hits gene bawswoby 575/575
(100 %)
0 diff
(100 %id)
BG169451 hypernephroma, cell line, Kidney .d 868 to 1491 1 to 624 I26M G27V E28K V29S L30W ...     624/755
(82 %)
20 diff
(97.4 %id)
BU538710 adenocarcinoma, cell line, breast .d 868 to 1593 1 to 726 exact     726/733
(99 %)
1 diff
(99.9 %id)
AV761956 bone marrow .d 868 to 1336 1 to 460 K64D D65T T66C C67G G68A ...     460/462
(99 %)
9 diff
(98.1 %id)
BP197772 adrenal gland .d 869 to 1450 1 to 582 exact     582/582
(100 %)
0 diff
(100 %id)
CD688567 normal nasopharynx .d 869 to 1471 23 to 625 exact     603/625
(96 %)
6 diff
(99.1 %id)
CD706498 normal nasopharynx .d 869 to 1466 45 to 639 exact     595/639
(93 %)
7 diff
(99.0 %id)
CD710438 normal nasopharynx .d 869 to 989 23 to 143       121/143
(84 %)
6 diff
(95.9 %id)
D30956   .d 869 to 1168 1 to 304       304/311
(97 %)
10 diff
(96.8 %id)
D31446   .d 869 to 1145 1 to 277       277/279
(99 %)
4 diff
(98.6 %id)
BY800431 eye .d 869 to 1508 1 to 640 exact     640/640
(100 %)
0 diff
(100 %id)
BF540736 hypernephroma, Kidney .d 869 to 1463 1 to 591 A24V     591/604
(97 %)
12 diff
(98.1 %id)
BM012991 brain, neuroblastoma, cell line .d 869 to 1591 1 to 726 F39L D40T K41R A42P Y43M ...     726/923
(78 %)
12 diff
(98.7 %id)
TI_59382229   .d 869 to 1591 97 to 822 F39L D40T K41R A42P Y43M ...     726/923
(78 %)
12 diff
(98.7 %id)
TI_149291605   .d 869 to 1592 853 to 132 T3P AAA   722/862
(83 %)
15 diff
(98.3 %id)
R71144 placenta .d 870 to 1307 1 to 442 M15W E17R K18S P19Q V20W ...     442/443
(99 %)
21 diff
(95.3 %id)
BQ649646 hepatocellular carcinoma, cell line, Liver .d 870 to 1592 1 to 734 exact     734/941
(78 %)
28 diff
(97.1 %id)
BU849930 ovary, teratocarcinoma, cell line .d 870 to 1592 1 to 723 exact     723/723
(100 %)
2 diff
(99.8 %id)
AV764510 bone marrow .d 870 to 1393 1 to 515 K64D D65T T66C C67G G68A ...     515/517
(99 %)
12 diff
(97.7 %id)
BM823482 Ascites, stomach .d 870 to 1408 1 to 539 exact     539/539
(100 %)
1 diff
(99.9 %id)
BU598247 mixed (pool of 40 RNAs) .d 871 to 1587 1 to 719 exact     719/803
(89 %)
25 diff
(96.9 %id)
CA453241 mixed (pool of 40 RNAs) .d 873 to 1590 1 to 725 exact     725/731
(99 %)
13 diff
(98.3 %id)
CD696210 normal nasopharynx .d 874 to 1305 38 to 470 K6N H7A R8P D9R F10L ...     433/470
(92 %)
14 diff
(97.1 %id)
BG025832 lymph, lymphoma, cell line .d 874 to 1351 7 to 487 L89F     481/550
(87 %)
13 diff
(97.7 %id)
TI_57189983   .d 874 to 1593 51 to 768 exact     718/727
(98 %)
13 diff
(98.3 %id)
BM700431.
matches multiple genes
eye, lens .d 874 to 1390 1 to 517 exact   also hits gene bawswoby 517/517
(100 %)
1 diff
(99.9 %id)
AK311961 brain .d 875 to 1219 1 to 345 V11G     345/345
(100 %)
1 diff
(99.8 %id)
CD176713 embryonic trophoblasts, made from WA01 stemcells .d 875 to 1592 10 to 727 exact AAA   718/727
(98 %)
6 diff
(99.2 %id)
CD249474 embryonic stem cells, WA01, passage 38 .d 875 to 1592 17 to 733 exact AAA   717/733
(97 %)
7 diff
(99.1 %id)
BI860154 breast, mammary adenocarcinoma, cell line .d 875 to 1593 1 to 717 exact     717/726
(98 %)
13 diff
(98.3 %id)
DA198972 brain .d 876 to 1436 2 to 562 V11G capped   561/561
(100 %)
1 diff
(99.9 %id)
CD700273 normal nasopharynx .d 876 to 1484 29 to 637 exact     609/637
(95 %)
6 diff
(99.1 %id)
CN400288 embryonic stem cells, DMSO-treated H9 cellline .d 876 to 1538 9 to 671 exact     663/671
(98 %)
6 diff
(99.2 %id)
AA507296 Prostate .d 876 to 1130 259 to 6       254/267
(95 %)
2 diff
(99.3 %id)
AW247610.
matches multiple genes
lung, small cell carcinoma .d 876 to 1414 9 to 547 exact   also hits gene bawswoby 539/547
(98 %)
6 diff
(99.0 %id)
BC008705 Muscle, rhabdomyosarcoma .d 876 to 1592 1 to 716 G68A A69P N70T A71P K72S ... available from MGC, AAA   716/716
(100 %)
1 diff
(99.9 %id)
BE887335 leiomyosarcoma, uterus .d 876 to 1587 1 to 713 exact     713/714
(99 %)
12 diff
(98.4 %id)
BF338064 brain, glioblastoma with EGFR amplification .d 876 to 1491 18 to 625 P14S V20G S22A L23W A24L ...     608/628
(96 %)
17 diff
(97.3 %id)
CN400278 embryonic stem cells, cell lines H1, H7, andH9 .d 877 to 1536 7 to 667 exact     661/667
(99 %)
7 diff
(99.0 %id)
CR740861   .d 877 to 1342 1 to 467 exact     467/471
(99 %)
2 diff
(99.6 %id)
BI199133 brain, neuroblastoma .d 877 to 1569 1 to 695 exact     695/943
(73 %)
10 diff
(99.0 %id)
BM543097 embryonal carcinoma, cell line, testis .d 877 to 1587 1 to 720 exact     720/1082
(66 %)
27 diff
(97.6 %id)
BQ893554 epidermoid carcinoma, cell line, salivary gland .d 877 to 1596 1 to 721 exact     721/721
(100 %)
3 diff
(99.6 %id)
AA736559 Ewing's sarcoma .d 878 to 1303 1 to 424 M15W E17R K18S P19Q V20W ...     424/425
(99 %)
12 diff
(97.2 %id)
BU187632 eye, retinoblastoma .d 878 to 1596 1 to 719 exact     719/779
(92 %)
1 diff
(99.9 %id)
CD174332 embryonic stem cells, WA01, passage 38 .d 879 to 1592 26 to 739 exact AAA   714/739
(96 %)
7 diff
(99.1 %id)
CD386154 embryonic trophoblasts, made from WA01 stemcells .d 879 to 1592 17 to 729 exact AAA   713/729
(97 %)
9 diff
(98.8 %id)
EL952936 eyeball .d 879 to 1426 21 to 568 exact     548/568
(96 %)
7 diff
(98.8 %id)
BE885124 leiomyosarcoma, uterus .d 879 to 1479 1 to 601 exact     601/908
(66 %)
13 diff
(98.6 %id)
BF669461 brain, primitive neuroectoderm .d 879 to 1464 1 to 599 E13D P14A M15H E17G K18R ...     599/870
(68 %)
51 diff
(94.2 %id)
BF668220 brain, primitive neuroectoderm .d 879 to 1429 1 to 549 I26M G27V E28K V29S L30W ...     549/549
(100 %)
6 diff
(99.0 %id)
BQ227241 melanotic melanoma, skin .d 879 to 1594 12 to 727 exact     716/733
(97 %)
8 diff
(99.0 %id)
CB112104 Liver .d 879 to 1328 1 to 451 T2S G79V     451/451
(100 %)
2 diff
(99.6 %id)
CB139223 Liver .d 879 to 1361 1 to 483 exact     483/483
(100 %)
0 diff
(100 %id)
TI_149293276   .d 879 to 1595 815 to 99 exact AAA   717/981
(73 %)
9 diff
(99.1 %id)
BX282475 epithelioid carcinoma, Pancreas .d 880 to 1336 1 to 457 exact     457/457
(100 %)
0 diff
(100 %id)
AJ713525 bone marrow .d 881 to 1133 1 to 253       253/253
(100 %)
2 diff
(99.3 %id)
AW881164 ovary .d 881 to 1219 1 to 339 exact     339/339
(100 %)
1 diff
(99.8 %id)
BG329273 eye, retinoblastoma .d 881 to 1593 1 to 705 exact     705/724
(97 %)
14 diff
(98.1 %id)
BF768790 epid_tumor .d 882 to 1256 10 to 385 E35D G38R D40A K41T Y43L ...     376/385
(97 %)
16 diff
(95.9 %id)
BF768800 epid_tumor .d 882 to 1287 10 to 416 exact     407/416
(97 %)
7 diff
(98.4 %id)
BF769691 epid_tumor .d 882 to 1299 9 to 427 exact     419/427
(98 %)
6 diff
(98.6 %id)
BQ638113 eye, retina .d 882 to 1469 1 to 589 exact     589/589
(100 %)
2 diff
(99.7 %id)
W65380 heart .d 882 to 1230 1 to 349 M15W E17R K18S P19Q V20W ... fully sequenced,   349/349
(100 %)
8 diff
(97.8 %id)
BI193346 epithelioid carcinoma cell line, Pancreas .d 882 to 1468 1 to 587 exact     587/590
(99 %)
2 diff
(99.7 %id)
BU595308 mixed (pool of 40 RNAs) .d 882 to 1535 1 to 672 exact     672/769
(87 %)
44 diff
(94.3 %id)
BU858371 mixed (pool of 40 RNAs) .d 882 to 1552 1 to 681 exact     681/821
(82 %)
30 diff
(96.4 %id)
BU934984 mixed (pool of 40 RNAs) .d 882 to 1503 1 to 627 exact     627/813
(77 %)
8 diff
(99.1 %id)
BG924824 cartilage .d 883 to 1474 86 to 677 exact     592/609
(97 %)
11 diff
(98.2 %id)
BX355199 Neuroblastoma Cot 50-normalized .d 883 to 1593 1 to 711 E17X S22X E36X E61G K64X ...     711/711
(100 %)
3 diff
(99.6 %id)
CD675061 eye, lens .d 883 to 1406 1 to 524 exact     524/524
(100 %)
0 diff
(100 %id)
BM083870 choriocarcinoma, placenta .d 883 to 1556 1 to 675 exact     675/675
(100 %)
1 diff
(99.9 %id)
BM479700 eye, retinoblastoma .d 883 to 1595 13 to 726 exact AAA   714/726
(98 %)
7 diff
(99.1 %id)
BU166600 melanotic melanoma, cell line, skin .d 883 to 1593 35 to 745 exact AAA   711/769
(92 %)
7 diff
(99.1 %id)
TI_227713762   .d 883 to 1592 799 to 91 exact AAA   709/1010
(70 %)
4 diff
(99.7 %id)
AA506331 Prostate .d 884 to 1136 253 to 1       253/268
(94 %)
5 diff
(98.2 %id)
BF214803.
matches multiple genes
bone marrow, from acute myelogenous leukemia .d 884 to 1538 1 to 652 I26M G27V E28K V29S L30W ...   also hits gene bawswoby 652/853
(76 %)
49 diff
(94.3 %id)
BF685000 leiomyosarcoma cell line, uterus .d 886 to 1593 1 to 706 exact     706/981
(71 %)
18 diff
(98.2 %id)
BQ278974 adenocarcinoma, cell line, breast .d 886 to 1592 1 to 707 exact AAA   707/707
(100 %)
0 diff
(100 %id)
BU161002 adenocarcinoma, Pancreas .d 886 to 1476 1 to 599 exact     599/1156
(51 %)
20 diff
(98.3 %id)
TI_149295158   .d 886 to 1595 793 to 84 exact AAA   710/965
(73 %)
3 diff
(99.7 %id)
BE563345 adenocarcinoma, Pancreas .d 887 to 1593 1 to 705 exact     705/770
(91 %)
7 diff
(99.1 %id)
BM462179 eye, retinoblastoma .d 887 to 1592 1 to 706 exact     706/1115
(63 %)
5 diff
(99.6 %id)
BE905176 epithelioid carcinoma, Pancreas .d 888 to 1593 1 to 708 E83A W84V C85V D86R A87R ... AAA   708/738
(95 %)
13 diff
(98.3 %id)
BQ431717 leiomyosarcoma, uterus .d 888 to 1593 1 to 706 exact     706/711
(99 %)
7 diff
(99.1 %id)
BU942303 mixed (pool of 40 RNAs) .d 888 to 1568 1 to 689 exact AAA   689/729
(94 %)
10 diff
(98.7 %id)
BG576097 breast, mammary adenocarcinoma, cell line .d 889 to 1574 1 to 684 exact     684/685
(99 %)
8 diff
(98.9 %id)
BQ219359 leiomyosarcoma, uterus .d 889 to 1592 1 to 704 exact AAA   704/704
(100 %)
0 diff
(100 %id)
BQ423545 embryonal carcinoma, cell line, testis .d 889 to 1592 1 to 708 exact     708/896
(79 %)
8 diff
(99.2 %id)
BY996465   .d 889 to 1532 18 to 661 exact     644/661
(97 %)
6 diff
(99.1 %id)
BF768932 epid_tumor .d 890 to 1257 1 to 368 exact     368/368
(100 %)
0 diff
(100 %id)
BF770066 epid_tumor .d 890 to 1119 1 to 230       230/230
(100 %)
0 diff
(100 %id)
BF771934 epid_tumor .d 890 to 1191 1 to 302       302/302
(100 %)
0 diff
(100 %id)
H87324.
matches multiple genes
eye, retina .d 890 to 1301 1 to 420 M15W E17R K18S P19Q V20W ... fully sequenced, also hits gene bawswoby 420/420
(100 %)
24 diff
(94.3 %id)
BF674377 Prostate .d 890 to 1565 1 to 671 exact AAA   671/692
(96 %)
34 diff
(95.1 %id)
AA037254.
matches multiple genes
senescent fibroblast .d 891 to 1490 1 to 595 M15W E17R K18S P19Q V20W ...   also hits gene bawswoby 595/595
(100 %)
17 diff
(97.2 %id)
BF686475 leiomyosarcoma cell line, uterus .d 891 to 1591 1 to 700 I26X AAA   700/700
(100 %)
11 diff
(98.5 %id)
BG337696 leiomyosarcoma cell line, uterus .d 891 to 1593 1 to 703 exact     703/1045
(67 %)
9 diff
(99.2 %id)
BM044333 carcinoma, cell line, Prostate .d 891 to 1593 1 to 708 G31V K32Q K33E L34A E35G ...     708/894
(79 %)
33 diff
(96.4 %id)
BQ430476 melanotic melanoma, skin .d 891 to 1591 1 to 708 exact     708/883
(80 %)
17 diff
(98.1 %id)
DN995461 breast cancer, Mammary gland (cancer tissue) .d 891 to 1537 8 to 654 exact     647/654
(98 %)
6 diff
(99.1 %id)
BQ345837.
matches multiple genes
nervous_tumor .d 892 to 1141 1 to 255     also hits gene bawswoby 255/256
(99 %)
15 diff
(94.2 %id)
AW404764 lymph .d 892 to 1493 1 to 602 exact     602/602
(100 %)
6 diff
(99.1 %id)
BM424106 amelanotic melanoma, cell line, skin .d 892 to 1592 1 to 701 exact     701/701
(100 %)
0 diff
(100 %id)
BU165841 melanotic melanoma, skin .d 892 to 1593 1 to 705 exact     705/916
(76 %)
6 diff
(99.4 %id)
N55921   .d 892 to 1305 1 to 410 M15W E17R K18S P19Q V20W ...     410/413
(99 %)
12 diff
(97.1 %id)
BE298232 muscle, rhabdomyosarcoma .d 893 to 1387 1 to 522 V11C A12G E13R P14A M15H ... available from MGC,   522/858
(60 %)
33 diff
(96.2 %id)
BM908301 astrocytoma grade IV, cell line, brain .d 893 to 1595 1 to 703 exact AAA   703/703
(100 %)
3 diff
(99.6 %id)
BM045070 carcinoma, cell line, Prostate .d 893 to 1597 1 to 705 exact     705/719
(98 %)
4 diff
(99.5 %id)
BM914834 amelanotic melanoma, cell line, skin .d 893 to 1568 1 to 681 exact     681/1185
(57 %)
7 diff
(99.5 %id)
BU542937 carcinoma, cell line, Prostate .d 893 to 1269 1 to 381 E61G W62M L63A K64X D65R ...     381/891
(42 %)
11 diff
(98.8 %id)
BM450478 eye, retinoblastoma .d 894 to 1592 13 to 711 exact     699/711
(98 %)
0 diff
(100 %id)
BF360560.
matches multiple genes
ovary .d 896 to 1253 38 to 392 exact   also hits gene bawswoby 355/392
(90 %)
7 diff
(98.3 %id)
CD674447.
matches multiple genes
eye, lens .d 896 to 1456 1 to 561 exact   Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base), also hits gene bawswoby 561/561
(100 %)
0 diff
(100 %id)
AA244342   .d 896 to 1318 1 to 422 M15W E17R K18S P19Q V20W ...     422/422
(100 %)
7 diff
(98.4 %id)
CB987511 Pooled-Glandular .d 896 to 1535 1 to 644 exact AAA   644/714
(90 %)
11 diff
(98.5 %id)
CD250786 Blood vessels - aorta, basilar and artery .d 896 to 1568 1 to 695 exact     695/785
(88 %)
39 diff
(95.1 %id)
BG105558 adrenal cortex carcinoma, cell line, adrenal gland .d 898 to 1472 1 to 573 I26M G27V E28K V29S L30W ...     573/573
(100 %)
2 diff
(99.7 %id)
BG779948 adenocarcinoma, Prostate .d 898 to 1566 1 to 666 exact     666/672
(99 %)
7 diff
(99.0 %id)
BQ684886 ductal carcinoma, cell line, Pancreas .d 898 to 1592 1 to 695 exact     695/696
(99 %)
1 diff
(99.9 %id)
AV761301 bone marrow .d 898 to 1298 1 to 398 K64D D65T T66C C67G G68A ...     398/405
(98 %)
3 diff
(99.3 %id)
BF879216 lung_tumor .d 899 to 1413 5 to 519 exact     515/533
(96 %)
9 diff
(98.4 %id)
CN400282 embryonic stem cells, DMSO-treated H9 cellline .d 899 to 1564 1 to 666 exact     666/666
(100 %)
0 diff
(100 %id)
BE292726 adenocarcinoma cell line, colon .d 899 to 1528 1 to 630 exact     630/631
(99 %)
8 diff
(98.8 %id)
AW407445 lymph .d 899 to 1192 1 to 294       294/294
(100 %)
4 diff
(98.7 %id)
BE732009 choriocarcinoma, placenta .d 899 to 1520 1 to 618 exact     618/618
(100 %)
4 diff
(99.4 %id)
BU596277 mixed (pool of 40 RNAs) .d 899 to 1592 1 to 698 exact     698/837
(83 %)
15 diff
(98.3 %id)
BU959786 mixed (pool of 40 RNAs) .d 899 to 1593 1 to 700 exact     700/870
(80 %)
11 diff
(98.8 %id)
TI_154141771   .d 899 to 1564 81 to 746 exact     666/666
(100 %)
2 diff
(99.7 %id)
CR736582 pooled .d 900 to 1377 1 to 478 exact     478/478
(100 %)
0 diff
(100 %id)
BQ436766 embryonal carcinoma, cell line, testis .d 902 to 1543 1 to 645 exact     645/929
(69 %)
12 diff
(98.8 %id)
BF978450 melanotic melanoma, high MDR, skin .d 903 to 1490 1 to 587 exact     587/590
(99 %)
7 diff
(98.9 %id)
AA375768 lung .d 905 to 1215 1 to 312       312/312
(100 %)
1 diff
(99.7 %id)
EC541991.
matches multiple genes
Prostate .d 905 to 1016 1 to 112     also hits gene bawswoby 112/112
(100 %)
0 diff
(100 %id)
AV660803 corresponding non cancerous liver tissue .d 905 to 1302 1 to 398 exact   Submitted on the opposite strand 398/398
(100 %)
0 diff
(100 %id)
BF185152 bone marrow, from chronic myelogenous leukemia .d 905 to 1380 1 to 481 K33Q L34A E35G E36G R37Q ...     481/906
(53 %)
24 diff
(97.4 %id)
BG533502 Liver .d 905 to 1587 1 to 683 exact     683/941
(72 %)
14 diff
(98.6 %id)
BF218394 brain, glioblastoma .d 905 to 1544 1 to 635 exact     635/812
(78 %)
15 diff
(98.2 %id)
BG987776 head_neck .d 906 to 1119 1 to 214       214/214
(100 %)
0 diff
(100 %id)
TI_154145664   .d 906 to 1535 77 to 710 exact     634/835
(75 %)
60 diff
(92.9 %id)
TI_154146816   .d 906 to 1334 82 to 510 exact     429/429
(100 %)
1 diff
(99.8 %id)
BF309938 muscle, rhabdomyosarcoma .d 907 to 1592 1 to 684 exact AAA   684/684
(100 %)
3 diff
(99.6 %id)
BQ002672 Chondrosarcoma, Left Pelvis .d 907 to 1592 704 to 19 exact AAA   686/686
(100 %)
2 diff
(99.8 %id)
CA417499 Chondrosarcoma Cell line .d 907 to 1592 703 to 19 exact AAA   685/685
(100 %)
3 diff
(99.6 %id)
AW802123 uterus .d 908 to 1330 1 to 423 F10L V11G V20A G31V D55V ...     423/423
(100 %)
8 diff
(98.2 %id)
BF346899 anaplastic oligodendroglioma with 1p/19qloss, brain .d 908 to 1591 1 to 680 I26T V45S G47A Q48S L50W ...     680/697
(97 %)
8 diff
(98.9 %id)
AW161592 brain, frontal lobe .d 909 to 1266 1 to 358 exact     358/358
(100 %)
0 diff
(100 %id)
BF035806 adenocarcinoma, ovary .d 910 to 1590 1 to 679 F39L D40T K41R A42P Y43M ...     679/797
(85 %)
22 diff
(97.3 %id)
BG028162 Bone, osteosarcoma, cell line .d 910 to 1593 1 to 681 exact     681/715
(95 %)
14 diff
(98.1 %id)
AW802153 uterus .d 911 to 1255 18 to 362 F10L V20A A24S G31A     345/366
(94 %)
11 diff
(97.0 %id)
AW406459 lymph .d 911 to 1431 1 to 521 exact     521/521
(100 %)
4 diff
(99.3 %id)
AW939133 denis_drash .d 912 to 1469 1 to 560 G47A     560/567
(98 %)
6 diff
(99.0 %id)
AW939184 denis_drash .d 912 to 1469 1 to 560 G47A     560/567
(98 %)
6 diff
(99.0 %id)
BG249709 hypernephroma, cell line, Kidney .d 912 to 1593 1 to 672 I26M G27V E28K V29S L30W ...     672/698
(96 %)
14 diff
(98.0 %id)
BI517783 pooled colon, kidney, stomach .d 912 to 1593 1 to 679 F39L D40T K41R A42P Y43M ... fully sequenced,   679/679
(100 %)
8 diff
(98.9 %id)
TI_45236194.
matches multiple genes
  .d 912 to 1593 70 to 748 F39L D40T K41R A42P Y43M ...   also hits gene bawswoby 679/1008
(67 %)
14 diff
(98.7 %id)
AW605534 denis_drash .d 913 to 1466 1 to 553 exact     553/553
(100 %)
4 diff
(99.3 %id)
BE907669 epithelioid carcinoma, Pancreas .d 913 to 1587 1 to 677 exact     677/762
(88 %)
10 diff
(98.7 %id)
BG253332 adenocarcinoma, cell line, Liver .d 913 to 1582 1 to 667 exact     667/953
(69 %)
12 diff
(98.8 %id)
BI518208 pooled colon, kidney, stomach .d 913 to 1518 620 to 21 exact fully sequenced,   600/620
(96 %)
0 diff
(100 %id)
BQ052922 blood, natural killer cells, cell line .d 913 to 1593 1 to 682 exact AAA   682/682
(100 %)
3 diff
(99.6 %id)
R58135   .d 914 to 1119 1 to 206       206/206
(100 %)
9 diff
(95.7 %id)
BE735421 adenocarcinoma, Pancreas .d 914 to 1509 1 to 595 exact     595/691
(86 %)
9 diff
(98.7 %id)
EC561538 Prostate .d 915 to 999 6 to 92       87/103
(84 %)
6 diff
(94.2 %id)
BM471231 melanotic melanoma, skin .d 915 to 1592 1 to 678 exact     678/678
(100 %)
1 diff
(99.9 %id)
BF346627 anaplastic oligodendroglioma with 1p/19qloss, brain .d 916 to 1540 1 to 624 exact     624/720
(86 %)
8 diff
(98.9 %id)
CA430868 cell lines, Chondrosarcoma .d 916 to 1592 695 to 19 D76E AAA   677/677
(100 %)
3 diff
(99.6 %id)
TI_154144086   .d 917 to 1451 79 to 613 exact     535/535
(100 %)
0 diff
(100 %id)
BE568100 bladder, carcinoma, cell line .d 918 to 1272 1 to 354 F39L D40T K41R A42P Y43M ...     354/712
(49 %)
3 diff
(99.6 %id)
BQ054044 blood, natural killer cells, cell line .d 918 to 1592 1 to 675 exact AAA   675/675
(100 %)
0 diff
(100 %id)
BM799343 Ascites, stomach .d 918 to 1366 1 to 449 E35D K53G     449/449
(100 %)
5 diff
(98.9 %id)
AA371719 pituitary gland .d 920 to 1196 1 to 279       279/279
(100 %)
4 diff
(98.6 %id)
BM985277 lung .d 920 to 1595 694 to 19 exact AAA   676/676
(100 %)
0 diff
(100 %id)
BG987845 head_neck .d 921 to 1262 355 to 14 exact     342/355
(96 %)
0 diff
(100 %id)
BU191640 epidermoid carcinoma, cell line, salivary gland .d 922 to 1592 1 to 671 exact AAA   671/671
(100 %)
0 diff
(100 %id)
CN400281 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 924 to 1592 1 to 670 exact     670/670
(100 %)
1 diff
(99.9 %id)
CN400277 embryonic stem cells, DMSO-treated H9 cellline .d 930 to 1523 1 to 596 exact     596/596
(100 %)
3 diff
(99.5 %id)
BM975025 lung .d 931 to 1595 683 to 19 exact AAA   665/665
(100 %)
2 diff
(99.7 %id)
BF879284 lung_tumor .d 933 to 1378 13 to 455 K6A H7R R8D D9F F10V ...     441/455
(96 %)
6 diff
(98.7 %id)
BG992734 head_neck .d 933 to 1269 32 to 371 S4L Q5P K6T H7C R8T ...     338/372
(90 %)
20 diff
(94.7 %id)
BI045463 prostate_normal .d 933 to 1377 444 to 1 P19X A24X     444/460
(96 %)
3 diff
(99.4 %id)
CN400279 embryonic stem cells, cell lines H1, H7, andH9 .d 933 to 1578 13 to 659 exact     645/659
(97 %)
8 diff
(98.8 %id)
BE275820 melanotic melanoma, skin .d 933 to 1596 1 to 656 exact     654/693
(94 %)
17 diff
(97.6 %id)
BE547194 cervical carcinoma cell line, cervix .d 933 to 1590 7 to 657 F39L D40T K41R A42P Y43M ...     651/657
(99 %)
14 diff
(97.9 %id)
BM800168 leiomyosarcoma, uterus .d 933 to 1596 15 to 678 exact     662/679
(97 %)
1 diff
(99.9 %id)
BE895300 melanotic melanoma, skin .d 934 to 1469 1 to 538 exact     538/539
(99 %)
2 diff
(99.7 %id)
AV694334 hepatocellular carcinoma .d 935 to 1498 130 to 697 T2S Q5H K6M R8L D9V ...     568/699
(81 %)
78 diff
(88.9 %id)
CN400289 embryonic stem cells, DMSO-treated H9 cellline .d 936 to 1502 1 to 567 exact     567/567
(100 %)
0 diff
(100 %id)
BF794947 lymph, lymphoma, cell line .d 936 to 1562 1 to 632 exact     630/1110
(56 %)
11 diff
(99.1 %id)
BG980000 colon_normal .d 938 to 1465 526 to 1 N70X     526/526
(100 %)
5 diff
(99.1 %id)
BE747475 adenocarcinoma cell line, ovary .d 938 to 1484 1 to 570 G79A C80M L81P R82S E83R ...     518/805
(64 %)
28 diff
(96.6 %id)
BP422973 small intestine .d 940 to 1443 1 to 504 exact   Submitted on the opposite strand 504/504
(100 %)
0 diff
(100 %id)
CD742600 Alveolar Macrophage, lung .d 942 to 1592 669 to 19 exact AAA   651/651
(100 %)
0 diff
(100 %id)
AF070447   .d 950 to 1219 1 to 270 exact     270/270
(100 %)
1 diff
(99.7 %id)
CR542140   .d 950 to 1216 1 to 267       267/267
(100 %)
0 diff
(100 %id)
CV027502 mixed .d 950 to 1225 1 to 276 exact     276/436
(63 %)
5 diff
(98.9 %id)
AI033692 parathyroid gland, parathyroid tumor .d 950 to 1592 657 to 15 Q5K R8E G16R E17K G25R ... AAA   643/643
(100 %)
16 diff
(97.6 %id)
AW157339.
matches multiple genes
brain, frontal lobe .d 950 to 1440 488 to 1 T3P S4T Q5I K6T H7P ...   also hits gene bawswoby 488/488
(100 %)
11 diff
(97.8 %id)
AA055386 heart .d 952 to 1072 1 to 121       121/121
(100 %)
2 diff
(98.4 %id)
BQ777023.
matches multiple genes
Pancreas, Purified pancreatic islet .d 952 to 1105 1 to 154     also hits gene bawswoby 154/154
(100 %)
6 diff
(96.2 %id)
BE795747 lung, small cell carcinoma .d 957 to 1593 1 to 637       637/637
(100 %)
2 diff
(99.7 %id)
BE082886 breast .d 958 to 1324 1 to 372       370/372
(99 %)
19 diff
(94.9 %id)
BE832841 ovary .d 958 to 1324 367 to 1       367/367
(100 %)
1 diff
(99.8 %id)
AA082301 heart .d 958 to 1070 1 to 112   fully sequenced,   112/112
(100 %)
1 diff
(99.2 %id)
AI805149 B-cell, chronic lymphotic leukemia .d 959 to 1593 638 to 4       635/638
(99 %)
0 diff
(100 %id)
AI718292 aorta .d 959 to 1592 632 to 1       632/632
(100 %)
9 diff
(98.6 %id)
TI_59380946   .d 960 to 1593 98 to 733       636/927
(68 %)
12 diff
(98.8 %id)
BU623714 cell lines, Enchondroma .d 960 to 1596 663 to 27       637/663
(96 %)
0 diff
(100 %id)
BM011771 brain, neuroblastoma, cell line .d 961 to 1593 1 to 637       635/928
(68 %)
16 diff
(98.3 %id)
AW057902 fibrotheoma, ovary .d 963 to 1593 630 to 3       626/631
(99 %)
11 diff
(98.3 %id)
BQ421905 epithelioid carcinoma, Pancreas .d 963 to 1596 1 to 638       636/884
(71 %)
6 diff
(99.4 %id)
AI801068 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 964 to 1440 477 to 1       477/485
(98 %)
4 diff
(99.2 %id)
BM708772.
matches multiple genes
eye, RPE and Choroid .d 966 to 1423 1 to 458     also hits gene bawswoby 458/458
(100 %)
0 diff
(100 %id)
R62329 placenta .d 971 to 1274 1 to 309   fully sequenced,   309/309
(100 %)
4 diff
(98.8 %id)
R66651 placenta .d 971 to 1323 1 to 360   fully sequenced,   360/360
(100 %)
6 diff
(98.4 %id)
R82676 placenta .d 971 to 1284 1 to 316   fully sequenced,   316/316
(100 %)
6 diff
(98.2 %id)
BF343157 brain, glioblastoma with EGFR amplification .d 972 to 1592 1 to 620   AAA   620/620
(100 %)
8 diff
(98.8 %id)
TI_57181330   .d 982 to 1594 66 to 675   AAA   608/704
(86 %)
12 diff
(98.3 %id)
BU624777 cell lines, Enchondroma .d 983 to 1592 629 to 19   AAA   611/611
(100 %)
8 diff
(98.7 %id)
BM510056 Pancreas, Purified pancreatic islet .d 986 to 1592 617 to 11   AAA   605/607
(99 %)
32 diff
(94.8 %id)
BI767390 pooled lung and spleen .d 986 to 1594 1 to 606       606/651
(93 %)
7 diff
(99.0 %id)
BX364122   .d 988 to 1562 577 to 1   fully sequenced,   577/577
(100 %)
9 diff
(98.5 %id)
BF738806 bladder_tumor .d 989 to 1412 436 to 14     Submitted on the opposite strand 423/436
(97 %)
1 diff
(99.8 %id)
CN400280 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 994 to 1438 1 to 445       445/445
(100 %)
0 diff
(100 %id)
AA308978 colon .d 997 to 1394 1 to 401       401/401
(100 %)
3 diff
(99.3 %id)
AW845333 colon .d 999 to 1191 1 to 193       191/204
(93 %)
9 diff
(95.6 %id)
AW802172 uterus .d 1010 to 1385 377 to 1       377/377
(100 %)
3 diff
(99.3 %id)
BM804115 eye, retinoblastoma .d 1012 to 1592 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
AW902974 nervous_normal .d 1022 to 1245 15 to 236       220/242
(90 %)
8 diff
(96.7 %id)
BF929293 nervous_tumor .d 1022 to 1489 1 to 468       468/473
(98 %)
17 diff
(96.5 %id)
AW802110 uterus .d 1024 to 1415 16 to 408       391/418
(93 %)
21 diff
(95.0 %id)
AW340164 pooled .d 1028 to 1588 561 to 4       558/561
(99 %)
5 diff
(99.2 %id)
BE170840 head_neck .d 1030 to 1247 231 to 14     Submitted on the opposite strand 218/235
(92 %)
1 diff
(99.6 %id)
CB218931.
matches multiple genes
mandible, pooled .d 1030 to 1592 611 to 49   AAA also hits gene bawswoby 563/563
(100 %)
25 diff
(95.6 %id)
AW802147 uterus .d 1031 to 1371 342 to 3       340/342
(99 %)
1 diff
(99.8 %id)
BF879276 lung_tumor .d 1033 to 1496 476 to 16     Submitted on the opposite strand 461/476
(96 %)
0 diff
(100 %id)
BE560575 Burkitt lymphoma, lymph .d 1036 to 1592 1 to 556   AAA   554/556
(99 %)
9 diff
(98.4 %id)
AW794316 uterus .d 1040 to 1308 14 to 283       268/283
(94 %)
8 diff
(97.2 %id)
BU588143 mixed (pool of 40 RNAs) .d 1040 to 1597 1 to 559       559/587
(95 %)
1 diff
(99.9 %id)
AW802168 uterus .d 1041 to 1378 1 to 338       338/340
(99 %)
15 diff
(95.6 %id)
BQ940051 leiomyosarcoma, uterus .d 1045 to 1591 1 to 547       547/986
(55 %)
9 diff
(99.1 %id)
BF376632 testis_normal .d 1050 to 1390 1 to 345       343/388
(88 %)
12 diff
(97.0 %id)
AA374912 lung .d 1052 to 1318 1 to 270       270/270
(100 %)
3 diff
(98.9 %id)
AA062973 heart .d 1057 to 1516 456 to 1   fully sequenced,   456/456
(100 %)
6 diff
(98.7 %id)
BG058508 blood, lymphocyte .d 1058 to 1596 542 to 4       539/542
(99 %)
0 diff
(100 %id)
BG171644 hypernephroma, cell line, Kidney .d 1058 to 1592 1 to 536   AAA   536/536
(100 %)
1 diff
(99.9 %id)
BM704569.
matches multiple genes
eye, optic nerve .d 1059 to 1583 1 to 525     also hits gene bawswoby 525/525
(100 %)
0 diff
(100 %id)
R53482 breast .d 1061 to 1388 1 to 337   fully sequenced,   337/337
(100 %)
8 diff
(97.7 %id)
AW878956 ovary .d 1064 to 1261 42 to 238       197/238
(82 %)
6 diff
(97.5 %id)
BE077392 breast .d 1064 to 1415 20 to 371       352/374
(94 %)
7 diff
(98.2 %id)
BI045900 prostate_normal .d 1064 to 1480 25 to 439       415/454
(91 %)
9 diff
(98.1 %id)
AW080994 colon, moderately differentiated adenocarcinoma .d 1064 to 1592 574 to 49   AAA   526/620
(84 %)
42 diff
(93.3 %id)
TI_154051507   .d 1064 to 1592 647 to 119   AAA   529/861
(61 %)
9 diff
(99.0 %id)
H42936.
matches multiple genes
breast .d 1065 to 1552 5 to 500     also hits gene bawswoby 496/503
(98 %)
23 diff
(95.5 %id)
BE077328 breast .d 1070 to 1414 1 to 344       344/350
(98 %)
8 diff
(97.8 %id)
TI_159696570   .d 1071 to 1592 616 to 93   AAA   524/1052
(49 %)
16 diff
(98.5 %id)
H15764 breast .d 1073 to 1340 13 to 296   fully sequenced,   284/296
(95 %)
4 diff
(98.7 %id)
AW262017 lung, two pooled squamous cell carcinomas .d 1073 to 1592 563 to 45   AAA   519/534
(97 %)
68 diff
(87.3 %id)
AW802114 uterus .d 1075 to 1500 428 to 2       427/428
(99 %)
0 diff
(100 %id)
AA405848   .d 1083 to 1577 1 to 493     Submitted on the opposite strand 493/493
(100 %)
2 diff
(99.6 %id)
BF771933 epid_tumor .d 1091 to 1459 368 to 1     Submitted on the opposite strand 368/369
(99 %)
5 diff
(98.7 %id)
AI377826 pooled .d 1093 to 1593 508 to 8       501/508
(98 %)
0 diff
(100 %id)
BF376838 testis_normal .d 1097 to 1349 257 to 5       253/261
(96 %)
0 diff
(100 %id)
AA877781 colon, colon tumor RER+ .d 1098 to 1593 500 to 7       494/500
(98 %)
0 diff
(100 %id)
TI_57182255   .d 1101 to 1592 29 to 519   AAA   491/519
(94 %)
6 diff
(98.9 %id)
BI771588 pooled lung and spleen .d 1102 to 1592 1 to 490   AAA   490/490
(100 %)
1 diff
(99.8 %id)
N22675 melanocyte .d 1103 to 1596 498 to 2       497/498
(99 %)
0 diff
(100 %id)
FN079907 breast carcinoma .d 1106 to 1192 85 to 1     Submitted on the opposite strand 85/91
(93 %)
2 diff
(97.9 %id)
BU955226 mixed (pool of 40 RNAs) .d 1106 to 1590 1 to 487       487/879
(55 %)
20 diff
(97.8 %id)
AA508010 Prostate .d 1108 to 1441 1 to 334       334/334
(100 %)
8 diff
(97.7 %id)
CB140772.
matches multiple genes
Liver .d 1108 to 1593 1 to 486     also hits gene bawswoby 486/494
(98 %)
1 diff
(99.8 %id)
AA405806   .d 1120 to 1593 476 to 4     Submitted on the opposite strand 473/476
(99 %)
0 diff
(100 %id)
AW361732 colon .d 1121 to 1480 360 to 1       360/360
(100 %)
4 diff
(98.9 %id)
AI870352 anaplastic oligodendroglioma, brain .d 1121 to 1592 484 to 13   AAA   472/472
(100 %)
9 diff
(98.1 %id)
BE694496 breast .d 1122 to 1395 275 to 5       271/280
(96 %)
0 diff
(100 %id)
AI245944 adenocarcinoma, colon .d 1123 to 1593 475 to 5       471/480
(98 %)
0 diff
(100 %id)
BM830857 stomach .d 1123 to 1592 1 to 470   AAA   470/470
(100 %)
0 diff
(100 %id)
AA309983   .d 1127 to 1396 1 to 270       270/270
(100 %)
0 diff
(100 %id)
AW804272 uterus .d 1127 to 1416 14 to 307       294/334
(88 %)
8 diff
(97.7 %id)
T12479   .d 1127 to 1245 124 to 4       121/125
(96 %)
0 diff
(100 %id)
AA132472 colon, tumor .d 1134 to 1440 308 to 1       308/308
(100 %)
4 diff
(98.8 %id)
AI376668 pooled .d 1136 to 1593 460 to 3       458/460
(99 %)
0 diff
(100 %id)
CA433023 mixed .d 1138 to 1592 473 to 19   AAA   455/455
(100 %)
0 diff
(100 %id)
BG283343 adenocarcinoma, cell line, Prostate .d 1139 to 1593 1 to 456   AAA   456/805
(56 %)
3 diff
(99.7 %id)
AJ706988 heart .d 1141 to 1371 1 to 231       231/231
(100 %)
4 diff
(98.3 %id)
N92574 parathyroid gland, parathyroid tumor .d 1142 to 1592 460 to 12   fully sequenced, AAA   449/449
(100 %)
5 diff
(98.9 %id)
BF349383 head_neck .d 1146 to 1374 229 to 1       229/231
(99 %)
3 diff
(98.8 %id)
BQ307932 breast .d 1146 to 1420 1 to 277       277/278
(99 %)
13 diff
(95.4 %id)
AI023505   .d 1149 to 1593 441 to 4       438/441
(99 %)
0 diff
(100 %id)
BQ438561 testis .d 1150 to 1592 1 to 443       443/477
(92 %)
1 diff
(99.8 %id)
AI871454 anaplastic oligodendroglioma, brain .d 1151 to 1592 453 to 12   AAA   442/442
(100 %)
4 diff
(99.1 %id)
AI753821 bone marrow stroma .d 1152 to 1592 460 to 20   AAA   441/441
(100 %)
0 diff
(100 %id)
AA502629 colon .d 1152 to 1593 444 to 3       442/446
(99 %)
0 diff
(100 %id)
AA843958 parathyroid gland, parathyroid tumor .d 1152 to 1592 452 to 12   AAA   441/441
(100 %)
0 diff
(100 %id)
H96667 melanocyte .d 1154 to 1593 446 to 5       442/449
(98 %)
0 diff
(100 %id)
AI818859 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .d 1154 to 1596 451 to 9       443/451
(98 %)
0 diff
(100 %id)
AA890261 parathyroid gland, parathyroid tumor .d 1157 to 1600 458 to 19   tiling clone, AAA   440/440
(100 %)
15 diff
(96.6 %id)
BQ308488 breast .d 1158 to 1420 12 to 273       262/274
(95 %)
6 diff
(97.9 %id)
AA968888 Kidney, kidney tumor .d 1164 to 1440 277 to 1       277/277
(100 %)
0 diff
(100 %id)
AI200846   .d 1164 to 1592 445 to 17   AAA   429/429
(100 %)
0 diff
(100 %id)
AI368783 lung .d 1166 to 1593 433 to 6       428/433
(98 %)
0 diff
(100 %id)
AW800153 uterus .d 1168 to 1482 319 to 8       312/326
(95 %)
0 diff
(100 %id)
BG014993 placenta_normal .d 1169 to 1478 1 to 311       311/311
(100 %)
8 diff
(97.5 %id)
AA844075 parathyroid gland, parathyroid tumor .d 1169 to 1593 429 to 6       424/429
(98 %)
0 diff
(100 %id)
BF807373 colon_ins .d 1170 to 1483 345 to 27     Submitted on the opposite strand 319/350
(91 %)
0 diff
(100 %id)
BF868465 lung_tumor .d 1170 to 1483 10 to 324       315/337
(93 %)
6 diff
(98.3 %id)
BF868597 lung_tumor .d 1170 to 1478 11 to 321       311/321
(96 %)
6 diff
(98.2 %id)
BF868605 lung_tumor .d 1170 to 1478 9 to 318       310/318
(97 %)
6 diff
(98.2 %id)
BF869189 lung_tumor .d 1170 to 1478 1 to 309       309/309
(100 %)
13 diff
(95.8 %id)
AI094436 pooled .d 1170 to 1592 423 to 1       423/423
(100 %)
1 diff
(99.8 %id)
AI222362 pooled .d 1170 to 1591 422 to 1       422/422
(100 %)
0 diff
(100 %id)
CD172055 White Matter .d 1172 to 1592 28 to 448   AAA   421/448
(93 %)
6 diff
(98.7 %id)
H27898 brain .d 1173 to 1569 399 to 1       399/403
(99 %)
10 diff
(97.6 %id)
BF806186 colon_ins .d 1175 to 1478 1 to 302       302/302
(100 %)
4 diff
(98.7 %id)
BF868549 lung_tumor .d 1175 to 1478 1 to 304       304/304
(100 %)
22 diff
(92.8 %id)
BF806191 colon_ins .d 1176 to 1483 321 to 15     Submitted on the opposite strand 307/326
(94 %)
0 diff
(100 %id)
AA035095 uterus .d 1176 to 1592 417 to 1       417/417
(100 %)
0 diff
(100 %id)
BF811195 colon_ins .d 1177 to 1475 1 to 299       299/302
(99 %)
14 diff
(95.4 %id)
BF806789 colon_ins .d 1178 to 1478 1 to 298       298/298
(100 %)
6 diff
(98.0 %id)
BE832465 marrow .d 1183 to 1386 214 to 3       212/214
(99 %)
0 diff
(100 %id)
BQ324352 colon_ins .d 1183 to 1483 312 to 9       304/312
(97 %)
0 diff
(100 %id)
BF804838.
matches multiple genes
colon_ins .d 1189 to 1483 315 to 24     Submitted on the opposite strand, also hits gene bawswoby 292/315
(92 %)
0 diff
(100 %id)
BF804841 colon_ins .d 1189 to 1483 300 to 9     Submitted on the opposite strand 292/300
(97 %)
0 diff
(100 %id)
BF804849 colon_ins .d 1189 to 1478 289 to 1     Submitted on the opposite strand 289/289
(100 %)
2 diff
(99.4 %id)
BF806177 colon_ins .d 1189 to 1483 324 to 32     Submitted on the opposite strand 293/324
(90 %)
0 diff
(100 %id)
BF806189 colon_ins .d 1189 to 1487 303 to 5     Submitted on the opposite strand 299/303
(98 %)
7 diff
(97.7 %id)
BF806190 colon_ins .d 1189 to 1483 304 to 10     Submitted on the opposite strand 295/304
(97 %)
0 diff
(100 %id)
BF806661 colon_ins .d 1189 to 1483 319 to 27     Submitted on the opposite strand 293/319
(91 %)
0 diff
(100 %id)
BF806669.
matches multiple genes
colon_ins .d 1189 to 1477 308 to 18     Submitted on the opposite strand, also hits gene bawswoby 291/308
(94 %)
0 diff
(100 %id)
BF806782 colon_ins .d 1189 to 1487 308 to 8     Submitted on the opposite strand 301/308
(97 %)
0 diff
(100 %id)
BF806786 colon_ins .d 1189 to 1483 312 to 20     Submitted on the opposite strand 293/312
(93 %)
0 diff
(100 %id)
BF806845 colon_ins .d 1189 to 1419 232 to 1     Submitted on the opposite strand 232/232
(100 %)
8 diff
(96.6 %id)
BF806849 colon_ins .d 1189 to 1483 301 to 7     Submitted on the opposite strand 295/301
(98 %)
0 diff
(100 %id)
BF809997 colon_ins .d 1189 to 1483 298 to 5     Submitted on the opposite strand 294/298
(98 %)
0 diff
(100 %id)
BF809998 colon_ins .d 1189 to 1483 325 to 32     Submitted on the opposite strand 294/325
(90 %)
0 diff
(100 %id)
BF810002 colon_ins .d 1189 to 1483 306 to 14     Submitted on the opposite strand 293/306
(95 %)
0 diff
(100 %id)
BF810004 colon_ins .d 1189 to 1478 289 to 1     Submitted on the opposite strand 289/289
(100 %)
2 diff
(99.4 %id)
BF868506 lung_tumor .d 1189 to 1478 290 to 1     Submitted on the opposite strand 290/290
(100 %)
0 diff
(100 %id)
BF868510 lung_tumor .d 1189 to 1478 1 to 290       290/290
(100 %)
0 diff
(100 %id)
BF868551 lung_tumor .d 1189 to 1478 1 to 290       290/290
(100 %)
1 diff
(99.7 %id)
BF868596 lung_tumor .d 1189 to 1478 290 to 1     Submitted on the opposite strand 290/290
(100 %)
4 diff
(98.7 %id)
BF868598 lung_tumor .d 1189 to 1478 1 to 290       290/290
(100 %)
14 diff
(95.2 %id)
BF869183 lung_tumor .d 1189 to 1478 290 to 1     Submitted on the opposite strand 290/290
(100 %)
1 diff
(99.7 %id)
BF869185 lung_tumor .d 1189 to 1478 1 to 290       290/290
(100 %)
2 diff
(99.4 %id)
BF869218 lung_tumor .d 1189 to 1488 312 to 13     Submitted on the opposite strand 300/312
(96 %)
0 diff
(100 %id)
BF869227 lung_tumor .d 1189 to 1478 290 to 1     Submitted on the opposite strand 290/290
(100 %)
15 diff
(94.9 %id)
BF947111 nervous_normal .d 1189 to 1459 277 to 9       269/277
(97 %)
0 diff
(100 %id)
H49330 brain .d 1191 to 1585 402 to 10   fully sequenced,   393/402
(97 %)
3 diff
(99.3 %id)
BF807371 colon_ins .d 1192 to 1483 298 to 9     Submitted on the opposite strand 290/298
(97 %)
0 diff
(100 %id)
BE698939 nervous_normal .d 1193 to 1413 234 to 15       220/234
(94 %)
0 diff
(100 %id)
BG015028 placenta_normal .d 1193 to 1413 1 to 220       220/220
(100 %)
7 diff
(96.9 %id)
F18900 pectoral muscle (after mastectomy) .d 1195 to 1593 1 to 399       399/399
(100 %)
0 diff
(100 %id)
AI090016 uterus .d 1199 to 1596 403 to 6       398/403
(98 %)
0 diff
(100 %id)
W61119 heart .d 1200 to 1593 396 to 1   fully sequenced,   396/396
(100 %)
2 diff
(99.5 %id)
BG171420 hypernephroma, cell line, Kidney .d 1204 to 1592 1 to 389   AAA   389/389
(100 %)
0 diff
(100 %id)
BG576395 breast, mammary adenocarcinoma, cell line .d 1205 to 1593 1 to 390       390/850
(45 %)
2 diff
(99.8 %id)
AI192414 uterus .d 1206 to 1388 183 to 1       183/183
(100 %)
0 diff
(100 %id)
R69095 placenta .d 1208 to 1595 391 to 1       391/391
(100 %)
9 diff
(97.7 %id)
BE968715 heart .d 1212 to 1591 1 to 375   AAA   375/375
(100 %)
6 diff
(98.4 %id)
BF815512 colon_ins .d 1213 to 1360 1 to 147       147/147
(100 %)
15 diff
(89.8 %id)
BF816256 colon_ins .d 1213 to 1360 1 to 147       147/147
(100 %)
15 diff
(89.8 %id)
AA782629 parathyroid gland, parathyroid tumor .d 1218 to 1592 385 to 12   AAA   374/374
(100 %)
1 diff
(99.8 %id)
BF807396.
matches multiple genes
colon_ins .d 1218 to 1483 283 to 16     Submitted on the opposite strand, also hits gene bawswoby 268/285
(94 %)
0 diff
(100 %id)
AA054951 heart .d 1219 to 1592 377 to 1       377/377
(100 %)
3 diff
(99.3 %id)
BF868499 lung_tumor .d 1222 to 1478 9 to 266       258/266
(96 %)
6 diff
(97.8 %id)
AA994346 pooled .d 1222 to 1593 371 to 1       371/371
(100 %)
1 diff
(99.8 %id)
AA609713   .d 1223 to 1595 404 to 32   AAA   373/373
(100 %)
0 diff
(100 %id)
AV758686 bone marrow .d 1226 to 1593 1 to 356   AAA   356/356
(100 %)
11 diff
(97.0 %id)
AI084898 anaplastic oligodendroglioma, brain .d 1227 to 1592 394 to 29   AAA   366/366
(100 %)
1 diff
(99.8 %id)
AA576464 breast, breast tumor .d 1230 to 1440 211 to 1       211/211
(100 %)
0 diff
(100 %id)
AI266154 lung .d 1237 to 1591 359 to 5       355/359
(98 %)
0 diff
(100 %id)
AA588580 colon, colon tumor RER+ .d 1241 to 1595 387 to 33   AAA   355/355
(100 %)
1 diff
(99.8 %id)
R62330 placenta .d 1244 to 1596 357 to 1   fully sequenced,   357/357
(100 %)
5 diff
(98.6 %id)
BE831342.
matches multiple genes
marrow .d 1245 to 1512 279 to 11     also hits gene bawswoby 269/279
(96 %)
0 diff
(100 %id)
R82632 placenta .d 1254 to 1599 350 to 1   fully sequenced,   350/350
(100 %)
8 diff
(97.8 %id)
BU536750 mixed (pool of 40 RNAs) .d 1254 to 1590 1 to 337       337/374
(90 %)
6 diff
(98.4 %id)
CK819864 Islets of Langerhans, Pancreas .d 1258 to 1592 1 to 335       335/335
(100 %)
0 diff
(100 %id)
AW602726 breast .d 1259 to 1459 1 to 201       201/201
(100 %)
0 diff
(100 %id)
BQ369300 placenta_normal .d 1265 to 1463 210 to 12       199/210
(94 %)
0 diff
(100 %id)
H19518 brain .d 1266 to 1592 332 to 1   fully sequenced,   332/332
(100 %)
6 diff
(98.2 %id)
EC556758 Prostate .d 1267 to 1399 1 to 133       133/133
(100 %)
0 diff
(100 %id)
H50062 brain .d 1269 to 1580 325 to 14       312/325
(96 %)
0 diff
(100 %id)
AW879938 ovary .d 1271 to 1520 280 to 31       250/280
(89 %)
0 diff
(100 %id)
AW750252 breast .d 1273 to 1459 40 to 226       187/226
(82 %)
6 diff
(97.4 %id)
AI192338 uterus .d 1273 to 1388 116 to 1       116/116
(100 %)
0 diff
(100 %id)
BM142056 Islets of Langerhans, Pancreas .d 1274 to 1441 1 to 168       168/168
(100 %)
0 diff
(100 %id)
F37941 pectoral muscle (after mastectomy) .d 1275 to 1593 1 to 319       319/319
(100 %)
0 diff
(100 %id)
AV734243 pheochromocytoma .d 1278 to 1592 1 to 315   AAA   315/315
(100 %)
1 diff
(99.7 %id)
AA576285 breast, breast tumor .d 1279 to 1440 162 to 1       162/162
(100 %)
0 diff
(100 %id)
AA897573 pooled .d 1283 to 1547 265 to 1       265/265
(100 %)
0 diff
(100 %id)
BX388551 Neuroblastoma Cot 50-normalized .d 1284 to 1593 1 to 310       310/310
(100 %)
6 diff
(98.1 %id)
H87268.
matches multiple genes
eye, retina .d 1285 to 1519 236 to 1   fully sequenced, also hits gene bawswoby 236/236
(100 %)
3 diff
(98.8 %id)
BU536416 mixed (pool of 40 RNAs) .d 1287 to 1595 1 to 309   AAA   309/309
(100 %)
3 diff
(99.1 %id)
AI128602 heart .d 1291 to 1592 302 to 1       302/302
(100 %)
0 diff
(100 %id)
R67372 placenta .d 1293 to 1599 312 to 3   fully sequenced,   310/312
(99 %)
4 diff
(98.8 %id)
BF807398 colon_ins .d 1298 to 1484 192 to 1     Submitted on the opposite strand 192/192
(100 %)
18 diff
(90.7 %id)
H15765 breast .d 1310 to 1592 287 to 1   fully sequenced,   287/287
(100 %)
4 diff
(98.7 %id)
AA887850.
matches multiple genes
colon, colon tumor RER+ .d 1320 to 1592 273 to 1     also hits gene bawswoby 273/273
(100 %)
1 diff
(99.7 %id)
BF806788.
matches multiple genes
colon_ins .d 1325 to 1483 174 to 11     Submitted on the opposite strand, also hits gene bawswoby 164/174
(94 %)
0 diff
(100 %id)
BI056573.
matches multiple genes
placenta_normal .d 1328 to 1515 187 to 1     also hits gene bawswoby 187/187
(100 %)
2 diff
(99.0 %id)
AI282424.
matches multiple genes
poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 1331 to 1440 110 to 1     also hits gene bawswoby 110/110
(100 %)
0 diff
(100 %id)
AW662240.
matches multiple genes
2 pooled high-grade transitional celltumors, genitourinary tract .d 1335 to 1440 106 to 1     also hits gene bawswoby 106/106
(100 %)
1 diff
(99.1 %id)
F18436 pectoral muscle (after mastectomy) .d 1335 to 1596 1 to 261       261/261
(100 %)
7 diff
(97.4 %id)
R53483 breast .d 1358 to 1591 234 to 1   fully sequenced,   234/234
(100 %)
3 diff
(98.8 %id)
AW084379.
matches multiple genes
esophagus, squamous cell carcinoma .d 1378 to 1440 64 to 1     also hits gene bawswoby 64/64
(100 %)
1 diff
(98.5 %id)
R48576 breast .d 1392 to 1591 205 to 5       201/205
(98 %)
0 diff
(100 %id)
F16282 pectoral muscle (after mastectomy) .d 1414 to 1593 1 to 180       180/182
(98 %)
6 diff
(96.8 %id)
AA884769 pooled .d 1419 to 1565 147 to 1       147/147
(100 %)
0 diff
(100 %id)
AW243709 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 1455 to 1590 1 to 136     Submitted on the opposite strand 136/136
(100 %)
0 diff
(100 %id)
EC456106 Prostate .d 1507 to 1591 1 to 83       83/87
(95 %)
7 diff
(92.0 %id)
NM_001143985.1   .e 1 to 1094 1 to 1094 exact RefSeq, AAA   1094/1094
(100 %)
0 diff
(100 %id)
CD700906 normal nasopharynx .e 154 to 653 35 to 530   tiling clone,   496/530
(93 %)
7 diff
(98.7 %id)
BU940708 mixed (pool of 40 RNAs) .e 184 to 1006 1 to 828 exact     828/828
(100 %)
14 diff
(98.4 %id)
CD388397 embryonic trophoblasts, made from WA01 stemcells .e 186 to 994 24 to 837 exact     814/867
(93 %)
18 diff
(98.0 %id)
BG687220 lung, mucoepidermoid carcinoma .e 186 to 898 1 to 709 T3X W84V C85V D86R A87S ... tiling clone,   709/729
(97 %)
28 diff
(96.2 %id)
AV716780   .e 187 to 804 1 to 618 exact     618/618
(100 %)
1 diff
(99.9 %id)
BQ212064 melanotic melanoma, skin .e 187 to 1055 1 to 875 exact     875/876
(99 %)
16 diff
(98.2 %id)
CD249725 embryonic stem cells, WA01, passage 38 .e 189 to 940 16 to 778 K41E V44A     763/841
(90 %)
33 diff
(96.1 %id)
BM800049 leiomyosarcoma, uterus .e 196 to 1089 1 to 904 exact tiling clone,   904/1006
(89 %)
13 diff
(98.8 %id)
BM006302 ductal carcinoma, cell line, Pancreas .e 197 to 747 1 to 556 K33T L34A E35G E36G R37Q ...     556/892
(62 %)
13 diff
(98.6 %id)
TI_59394930   .e 198 to 747 111 to 665 K33T L34A E35G E36G R37Q ...     555/891
(62 %)
12 diff
(98.7 %id)
BM017683 astrocytoma grade IV, cell line, brain .e 200 to 851 1 to 675 K33N L34A E35G E36G R37T ...     675/682
(98 %)
29 diff
(95.8 %id)
BM017734 astrocytoma grade IV, cell line, brain .e 200 to 749 1 to 561 F39K A42G Y43L V44C V45R ...     561/561
(100 %)
25 diff
(95.6 %id)
BU192951 epithelioid carcinoma, Pancreas .e 200 to 1044 1 to 860 exact     860/908
(94 %)
35 diff
(96.2 %id)
TI_59388254   .e 201 to 851 111 to 784 K33N L34A E35G E36G R37T ...     674/681
(98 %)
28 diff
(95.9 %id)
TI_59388305   .e 201 to 749 113 to 672 F39K A42G Y43L V44C V45R ...     560/560
(100 %)
24 diff
(95.8 %id)
TI_153959272   .e 203 to 723 86 to 607 A12V P19S G21R G31S K41Q ...     522/522
(100 %)
35 diff
(93.3 %id)
BE617459 adenocarcinoma, colon .e 216 to 965 1 to 753 I26M G27V E28K V29S L30W ...     753/753
(100 %)
29 diff
(96.2 %id)
BG484880 lung .e 216 to 965 1 to 749 F39L D40T K41R A42P Y43M ...     749/750
(99 %)
16 diff
(97.9 %id)
BF794548 lymph, lymphoma, cell line .e 228 to 982 1 to 761 exact     761/908
(83 %)
15 diff
(98.4 %id)
BQ425103 eye, retinoblastoma .e 230 to 790 1 to 571 W62M L63A K64E N70X A71R ...     571/813
(70 %)
23 diff
(97.2 %id)
BQ434664 eye, retinoblastoma .e 230 to 1053 1 to 837 exact     837/879
(95 %)
17 diff
(98.1 %id)
BM046963 carcinoma, cell line, Prostate .e 231 to 1056 1 to 826 exact     826/826
(100 %)
20 diff
(97.6 %id)
BG114919 duodenal adenocarcinoma, cell line, small intestine .e 238 to 980 1 to 740 exact     740/1087
(68 %)
10 diff
(99.1 %id)
BE905962 epithelioid carcinoma, Pancreas .e 259 to 822 1 to 564 exact     564/564
(100 %)
1 diff
(99.9 %id)
CD710497 normal nasopharynx .e 268 to 837 16 to 585 exact     570/585
(97 %)
6 diff
(99.0 %id)
BC107702 Pooled, 40 cell lines .e 269 to 1094 1 to 827 exact AAA   827/827
(100 %)
6 diff
(99.3 %id)
AW583591 Islets of Langerhans, Pancreas .e 269 to 699 1 to 431       431/432
(99 %)
8 diff
(98.2 %id)
BU601321 mixed (pool of 40 RNAs) .e 270 to 1037 1 to 782 exact     782/862
(90 %)
18 diff
(98.0 %id)
CD385862 embryonic trophoblasts, made from WA01 stemcells .e 276 to 889 1 to 623 exact     623/785
(79 %)
22 diff
(97.2 %id)
T67565 Liver .e 284 to 650 1 to 375       375/381
(98 %)
17 diff
(95.6 %id)
BE891041 melanotic melanoma, skin .e 297 to 960 1 to 664 exact     664/917
(72 %)
6 diff
(99.4 %id)
ES313606 beard hair, skin .e 301 to 714 1 to 414       414/414
(100 %)
0 diff
(100 %id)
AW973531   .e 306 to 605 299 to 1     Submitted on the opposite strand 299/428
(69 %)
2 diff
(99.6 %id)
CN400285 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 306 to 797 1 to 493 exact     493/493
(100 %)
4 diff
(99.2 %id)
CN400284 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 329 to 867 1 to 540 exact     540/540
(100 %)
1 diff
(99.9 %id)
BE790011 large cell carcinoma, lung .e 330 to 1068 1 to 724 exact AAA   724/745
(97 %)
22 diff
(97.1 %id)
AA576753 colon, colon tumor RER+ .e 340 to 605 264 to 1       264/264
(100 %)
2 diff
(99.3 %id)
AF044773 Uterine .e 348 to 1094 1 to 744 A87P F88S L89C tiling clone, AAA   744/744
(100 %)
4 diff
(99.5 %id)
BG032966 breast, mammary adenocarcinoma, cell line .e 352 to 1036 1 to 677 exact     677/899
(75 %)
15 diff
(98.4 %id)
BE769829 prostate_tumor .e 357 to 897 549 to 10 exact     540/549
(98 %)
0 diff
(100 %id)
BE769830 prostate_tumor .e 357 to 897 548 to 9 F59L     540/548
(98 %)
0 diff
(100 %id)
AW796437 uterus .e 405 to 779 10 to 383 exact     374/383
(97 %)
6 diff
(98.5 %id)
BG260576 bladder, transitional cell papilloma, cell line .e 415 to 1097 1 to 674 exact AAA   674/674
(100 %)
12 diff
(98.3 %id)
BX464311 fetal liver, Liver .f 1 to 520 1 to 516   tiling clone,   516/516
(100 %)
7 diff
(98.7 %id)
AL045311 testis .f 199 to 602 1 to 404       404/404
(100 %)
1 diff
(99.8 %id)
BU502248 mixed (pool of 40 RNAs) .f 206 to 762 1 to 564       564/926
(60 %)
25 diff
(97.4 %id)
BU602507 mixed (pool of 40 RNAs) .f 206 to 747 1 to 544       544/696
(78 %)
16 diff
(97.8 %id)
BF675937 Prostate .f 229 to 942 1 to 713 S4P Q5K K6S H7T R8E ... tiling clone,   713/878
(81 %)
58 diff
(93.4 %id)
BM835022 stomach .f 242 to 734 1 to 493       493/493
(100 %)
0 diff
(100 %id)
BG829864 epithelioid carcinoma cell line, Pancreas .f 245 to 1047 1 to 796 exact tiling clone,   796/870
(91 %)
10 diff
(98.9 %id)
AA354553   .f 256 to 568 1 to 315       315/323
(97 %)
4 diff
(98.8 %id)
CN400287 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .g 1 to 670 1 to 672 exact tiling clone,   672/672
(100 %)
3 diff
(99.6 %id)
BU657104 blood .g 21 to 326 4 to 309       306/309
(99 %)
6 diff
(98.1 %id)
BU849409 mixed (pool of 40 RNAs) .h 1 to 645 8 to 664 exact tiling clone,   664/810
(81 %)
40 diff
(95.1 %id)
CD176390 embryonic trophoblasts, made from WA01 stemcells .i 1 to 611 22 to 632 exact tiling clone, AAA   611/632
(96 %)
7 diff
(98.9 %id)
BU600394 mixed (pool of 40 RNAs) .i 21 to 615 1 to 595 exact     595/628
(94 %)
6 diff
(99.1 %id)
BP319707 pericardium .i 24 to 606 1 to 583 exact     583/583
(100 %)
3 diff
(99.5 %id)
CF129460 Chondrosarcoma Lung Metastasis cell lines, lung .i 27 to 611 1 to 585 exact     585/585
(100 %)
0 diff
(100 %id)
TI_154191168   .i 27 to 612 51 to 636 exact tiling clone,   586/1012
(57 %)
1 diff
(100.0 %id)
BG254986 adenocarcinoma, cell line, Prostate .i 34 to 611 1 to 577 exact AAA   577/577
(100 %)
6 diff
(99.0 %id)
AA063466 heart .i 47 to 347 1 to 301 Q11K A12Q V13S P14R G15D ...     301/311
(96 %)
8 diff
(97.5 %id)
R81889 placenta .i 65 to 378 1 to 319 Q11K A12Q V13S P14R G15D ... fully sequenced,   319/319
(100 %)
2 diff
(99.4 %id)
AA400061   .i 65 to 138 1 to 74       74/74
(100 %)
0 diff
(100 %id)
CR744883   .i 67 to 611 1 to 545 exact AAA   545/545
(100 %)
0 diff
(100 %id)
CN400286 embryonic stem cells, DMSO-treated H9 cellline .i 77 to 583 7 to 513 exact     507/513
(98 %)
0 diff
(100 %id)
AA401366   .i 204 to 612 411 to 3       409/411
(99 %)
0 diff
(100 %id)
R81787 placenta .i 348 to 611 269 to 1   fully sequenced,   269/269
(100 %)
1 diff
(99.7 %id)
AA035635 heart .i 446 to 611 166 to 1       166/172
(96 %)
0 diff
(100 %id)
BE263724 lung, small cell carcinoma .j 1 to 562 1 to 565 G20R tiling clone,   565/565
(100 %)
7 diff
(98.8 %id)
AA339550 brain Gene BANF1, variant not shown         This clone was ignored    
AV655875 corresponding non cancerous liver tissue Gene BANF1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BJ994959 hepatoblastoma Gene BANF1, variant not shown         Suspected internal deletion, this clone was ignored    
BF237719 leiomyosarcoma cell line, uterus Gene BANF1, variant not shown         Suspected internal deletion, this clone was ignored    
BU587756 mixed (pool of 40 RNAs) Gene BANF1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d, .e, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI