To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene MAGI1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
308 supporting clones for gene MAGI1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA248854   .a 5724 to 6032 10 to 320       311/323
(96 %)
19 diff
(94.2 %id)
AA331427 Embryo, 8 weeks .a 6247 to 6569 1 to 326       326/332
(98 %)
5 diff
(98.5 %id)
AA332782 Embryo, 8 weeks .a 6247 to 6489 1 to 243       243/253
(96 %)
1 diff
(99.7 %id)
AA332988 Embryo, 8 weeks .a 6247 to 6489 1 to 243       243/243
(100 %)
1 diff
(99.6 %id)
AA333011 Embryo, 8 weeks .a 6247 to 6620 1 to 376       376/382
(98 %)
7 diff
(98.2 %id)
AA385767 thyroid gland .a 6411 to 6709 1 to 299       299/299
(100 %)
0 diff
(100 %id)
AB010894 brain .c 261 to 5051 1 to 4791 S124F tiling clone,   4791/4791
(100 %)
2 diff
(100.0 %id)
BP198883 brain .e 675 to 1262 1 to 592   tiling clone,   592/592
(100 %)
9 diff
(98.5 %id)
AF401654   .b 503 to 5064 1 to 4562 S124F tiling clone,   4562/4562
(100 %)
1 diff
(100.0 %id)
AF401656   .a 503 to 4891 1 to 4389 S124F tiling clone,   4389/4389
(100 %)
2 diff
(100.0 %id)
AK023358 ovary, tumor tissue .a 4538 to 6374 1 to 1837   available from FLJ,   1837/1837
(100 %)
5 diff
(99.8 %id)
AK124433 bladder .q-u 1 to 2180 6 to 2185 exact tiling clone, available from FLJ,   2185/2185
(100 %)
1 diff
(100.0 %id)
AK127518 thalamus .i-u 1 to 3329 1 to 3329 S161P tiling clone, available from FLJ,   3329/3329
(100 %)
2 diff
(100.0 %id)
AK130632 Spleen .q-u 473 to 2180 1 to 1708 exact available from FLJ,   1708/1708
(100 %)
1 diff
(100.0 %id)
AK289803 brain .c 408 to 4587 1 to 4180 D428H I1001T tiling clone,   4180/4180
(100 %)
2 diff
(100.0 %id)
AK307794 amygdala .d 1 to 972 1 to 971   tiling clone,   971/971
(100 %)
1 diff
(99.9 %id)
AL050184 uterus .a 6852 to 7738 1 to 887   available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 887/887
(100 %)
0 diff
(100 %id)
AW377011 colon .a 2384 to 2652 270 to 1       270/270
(100 %)
2 diff
(99.3 %id)
AW497636   .c 5968 to 6064 95 to 1       95/95
(100 %)
2 diff
(97.9 %id)
AW609128 stomach .a 3054 to 3257 212 to 6       207/212
(97 %)
1 diff
(99.6 %id)
AW846037 colon .e 1 to 165 1 to 165       165/165
(100 %)
2 diff
(98.8 %id)
AW846052 colon .e 1 to 165 1 to 165   tiling clone,   165/165
(100 %)
2 diff
(98.8 %id)
AW952520   .a 6248 to 6721 1 to 474       474/485
(97 %)
17 diff
(96.5 %id)
BE000126 breast_normal .a 1211 to 1530 11 to 333       320/333
(96 %)
6 diff
(98.2 %id)
BE077090 breast .a 5448 to 5763 15 to 330       316/330
(95 %)
6 diff
(98.2 %id)
BE178089 head_neck .a 6296 to 6911 643 to 26     Submitted on the opposite strand 618/643
(96 %)
0 diff
(100 %id)
BE178357 head_neck .a 6242 to 6489 8 to 258       251/272
(92 %)
22 diff
(92.0 %id)
BE818804 breast_normal .a 5783 to 6056 280 to 6       275/285
(96 %)
0 diff
(100 %id)
BE818816 breast_normal .a 5783 to 6076 295 to 1       295/300
(98 %)
2 diff
(99.4 %id)
BE833257 ovary .a 5820 to 6195 377 to 4       374/377
(99 %)
0 diff
(100 %id)
BE835921 prostate_normal .a 1207 to 1519 312 to 1       312/323
(96 %)
3 diff
(99.1 %id)
BE840899 stomach_normal .a 2546 to 2765 1 to 221       221/224
(98 %)
4 diff
(98.3 %id)
BE925619 amnion_normal .a 3047 to 3223 178 to 2       177/178
(99 %)
2 diff
(98.9 %id)
BF090013 nervous_normal .a 1183 to 1323 4 to 145       142/145
(97 %)
6 diff
(95.9 %id)
BF329113 breast_normal .a 4778 to 5006 1 to 229       229/239
(95 %)
6 diff
(97.5 %id)
BF736720 bladder_tumor .a 7133 to 7610 478 to 1     Submitted on the opposite strand 478/478
(100 %)
6 diff
(98.8 %id)
BF821548 kidney_tumor .a 5789 to 6084 298 to 4     Submitted on the opposite strand 295/298
(98 %)
0 diff
(100 %id)
BF821632 kidney_tumor .a 5789 to 6079 287 to 1     Submitted on the opposite strand 287/287
(100 %)
3 diff
(99.0 %id)
BF960082 nervous_normal .a 1178 to 1617 446 to 7       440/446
(98 %)
1 diff
(99.8 %id)
BF963945 nervous_normal .a 1097 to 1356 311 to 50       262/311
(84 %)
0 diff
(100 %id)
BF964138 nervous_normal .a 1097 to 1617 15 to 535       521/540
(96 %)
7 diff
(98.8 %id)
BI033821 nervous_normal .a 1097 to 1610 20 to 532       513/532
(96 %)
8 diff
(98.5 %id)
BI033822 nervous_normal .a 1097 to 1577 18 to 498       481/498
(96 %)
7 diff
(98.6 %id)
BI035280 nervous_normal .a 1097 to 1610 515 to 2       514/526
(97 %)
4 diff
(99.3 %id)
BI055044 placenta_normal .a 7271 to 7459 7 to 196       190/199
(95 %)
3 diff
(98.5 %id)
DA045848 bladder .q-u 1 to 454 6 to 459   capped   458/458
(100 %)
0 diff
(100 %id)
DB296155 bladder .q-u 1647 to 2180 534 to 1       534/534
(100 %)
0 diff
(100 %id)
BM505653 insulinoma, Pancreas .d 827 to 1405 579 to 1   tiling clone,   579/582
(99 %)
13 diff
(97.8 %id)
BM509021 insulinoma, Pancreas .a 3260 to 3411 1 to 152       152/152
(100 %)
5 diff
(96.8 %id)
BQ338965 nervous_normal .a 1157 to 1542 481 to 95       387/481
(80 %)
0 diff
(100 %id)
BQ340395 nervous_normal .a 1097 to 1611 1 to 515       515/515
(100 %)
6 diff
(98.9 %id)
BQ340416 nervous_normal .a 1097 to 1612 1 to 516       516/518
(99 %)
14 diff
(97.3 %id)
BQ340507 nervous_normal .a 1115 to 1611 496 to 1       496/496
(100 %)
10 diff
(98.0 %id)
DA099551 cerebellum .a 1880 to 2442 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA110185 cerebellum .a 1 to 498 2 to 500   tiling clone, capped   499/499
(100 %)
1 diff
(99.8 %id)
DC317730 amygdala .d 1 to 573 1 to 572       572/572
(100 %)
1 diff
(99.9 %id)
DA234500 brain .a 409 to 981 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
DA240142 brain .b 2845 to 3427 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA242396 brain .j 28 to 612 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA312768 hippocampus .j 1 to 541 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DC333089 hippocampus .d 62 to 617 1 to 556   tiling clone,   556/556
(100 %)
0 diff
(100 %id)
DA336098 hippocampus .j 1 to 575 2 to 576   tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
DA369173 subthalamic nucleus .c 4443 to 5001 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA390644 thalamus .b 2522 to 3094 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DC341727 thalamus .d 14 to 605 1 to 592       592/592
(100 %)
1 diff
(99.9 %id)
DA410241 thalamus .a 4044 to 4596 2 to 554   capped   553/554
(99 %)
1 diff
(99.9 %id)
DA415713 thalamus .i-u 1 to 559 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
BX089296 placenta .a 7111 to 7738 1 to 629   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 629/629
(100 %)
1 diff
(99.9 %id)
BX280450 heart .p 1 to 435 1 to 435   tiling clone,   435/437
(99 %)
2 diff
(99.6 %id)
BX282162 pooled .a 4852 to 5108 1 to 257   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 257/257
(100 %)
0 diff
(100 %id)
CN292151 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 6244 to 6798 1 to 555       555/555
(100 %)
0 diff
(100 %id)
CN372418 embryonic stem cells, DMSO-treated H9 cellline .a 5830 to 6446 1 to 617   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 617/617
(100 %)
1 diff
(99.9 %id)
CN372419 embryonic stem cells, cell lines H1, H7, andH9 .a 5488 to 6067 1 to 578       578/578
(100 %)
4 diff
(99.4 %id)
CN372420 embryonic stem cells, DMSO-treated H9 cellline .a 4816 to 5257 1 to 442       442/442
(100 %)
4 diff
(99.1 %id)
CN428096 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 707 to 1078 1 to 372       372/372
(100 %)
0 diff
(100 %id)
CN428097 embryonic stem cells, cell lines H1, H7, andH9 .a 1847 to 2382 1 to 536       536/536
(100 %)
1 diff
(99.9 %id)
CN428098 embryonic stem cells, cell lines H1, H7, andH9 .h 1 to 661 1 to 660   tiling clone,   660/661
(99 %)
2 diff
(99.7 %id)
CN428099 embryonic stem cells, DMSO-treated H9 cellline .a 146 to 742 1 to 597       597/597
(100 %)
4 diff
(99.4 %id)
CN428100 embryonic stem cells, DMSO-treated H9 cellline .j 489 to 1002 1 to 514   tiling clone,   514/514
(100 %)
1 diff
(99.9 %id)
CN428101 embryonic stem cells, cell lines H1, H7, andH9 .a 1372 to 1958 1 to 587       587/587
(100 %)
0 diff
(100 %id)
CR738848 pooled germ cell tumors .a 7402 to 7744 1 to 343   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 343/343
(100 %)
0 diff
(100 %id)
CR741647 carcinoid, lung .a 6184 to 6675 1 to 493       493/493
(100 %)
1 diff
(99.8 %id)
CR746237   .f 1276 to 1750 1 to 476       476/476
(100 %)
1 diff
(99.8 %id)
CA393929 eye, RPE/choroid .n 1 to 530 1 to 530 exact tiling clone,   530/530
(100 %)
0 diff
(100 %id)
AL044443.
matches multiple genes
testis .a 4835 to 5108 288 to 15   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base), also hits gene GIT1 274/274
(100 %)
0 diff
(100 %id)
BX509702   .a 4943 to 5109 1 to 167       167/293
(56 %)
1 diff
(99.7 %id)
BX506903 Liver .a 5876 to 6316 1 to 446       446/446
(100 %)
8 diff
(98.3 %id)
BP226418   .s-u 426 to 981 1 to 558 F74S V79L V81L F82S S83F ... tiling clone,   558/558
(100 %)
2 diff
(99.7 %id)
DT219440 brain .a 6496 to 7187 1 to 692       692/692
(100 %)
1 diff
(99.9 %id)
DT220503 brain .a 7301 to 7744 1 to 443       443/450
(98 %)
3 diff
(99.4 %id)
DA505175 brain .a 5127 to 5705 2 to 578   capped   577/577
(100 %)
4 diff
(99.4 %id)
DA530667 brain .a 2269 to 2885 2 to 618   capped   617/617
(100 %)
1 diff
(99.9 %id)
DA535701 heart .a 4790 to 5370 20 to 600   capped   581/599
(96 %)
6 diff
(99.0 %id)
FN046352 breast carcinoma .a 6177 to 6229 53 to 1     Submitted on the opposite strand 53/53
(100 %)
0 diff
(100 %id)
FN050730 breast carcinoma .a 5530 to 5607 78 to 1     Submitted on the opposite strand 78/78
(100 %)
0 diff
(100 %id)
FN067655 breast carcinoma .a 6144 to 6215 1 to 70       70/71
(98 %)
3 diff
(95.8 %id)
FN085437 breast carcinoma .a 5453 to 5551 1 to 96       96/104
(92 %)
7 diff
(93.3 %id)
FN103349 breast carcinoma .a 5659 to 5737 78 to 1     Submitted on the opposite strand 78/94
(82 %)
1 diff
(99.0 %id)
FN137942 breast carcinoma .r-u 573 to 651 78 to 3     Submitted on the opposite strand 76/87
(87 %)
0 diff
(100 %id)
FN148681 breast carcinoma .a 7290 to 7397 1 to 102       102/102
(100 %)
6 diff
(94.2 %id)
FN149622 breast carcinoma .f 1701 to 1803 104 to 1     Submitted on the opposite strand 104/104
(100 %)
2 diff
(98.1 %id)
FN149945 breast carcinoma .f 1725 to 1803 1 to 80       80/80
(100 %)
6 diff
(92.5 %id)
FN165293 breast carcinoma .f 1543 to 1629 1 to 87       87/87
(100 %)
2 diff
(97.8 %id)
FN166109 breast carcinoma .a 5566 to 5661 1 to 95       95/95
(100 %)
1 diff
(99.0 %id)
FN173009 breast carcinoma .a 4011 to 4109 98 to 1     Submitted on the opposite strand 98/98
(100 %)
1 diff
(99.0 %id)
D80397 brain .a 7360 to 7744 385 to 1       385/387
(99 %)
0 diff
(100 %id)
D80398 brain .a 6244 to 6485 1 to 242       242/242
(100 %)
2 diff
(99.2 %id)
D60177 brain .a 7564 to 7744 189 to 1       424/456
(92 %)
25 diff
(94.6 %id)
D80618 brain .a 6244 to 6486 1 to 244       244/244
(100 %)
1 diff
(99.6 %id)
D80856 brain .a 6244 to 6517 1 to 275       275/275
(100 %)
2 diff
(99.3 %id)
D81176 brain .a 6244 to 6473 1 to 231       231/235
(98 %)
2 diff
(99.2 %id)
D60880   .a 6976 to 7325 1 to 351       351/351
(100 %)
2 diff
(99.5 %id)
D81356 brain .a 6976 to 7378 1 to 403       403/403
(100 %)
3 diff
(99.3 %id)
DB463362 hippocampus .a 6152 to 6578 1 to 427       427/432
(98 %)
5 diff
(98.9 %id)
DB529223 hippocampus .a 7522 to 7742 1 to 224     Submitted on the opposite strand 224/224
(100 %)
4 diff
(98.3 %id)
DB484384 hypothalamus .a 6006 to 6440 1 to 435       435/435
(100 %)
2 diff
(99.6 %id)
DB553325 hypothalamus .a 7301 to 7742 1 to 442     Submitted on the opposite strand 442/442
(100 %)
2 diff
(99.6 %id)
BY796708 eye .j 16 to 645 1 to 630       630/630
(100 %)
0 diff
(100 %id)
BY797831 eye .a 505 to 992 1 to 488       488/488
(100 %)
0 diff
(100 %id)
M85829   .e 450 to 689 243 to 1       243/244
(99 %)
4 diff
(98.4 %id)
CD676601 eye, Trabecular meshwork .a 4851 to 5108 1 to 258       258/319
(80 %)
0 diff
(100 %id)
R14359 whole brain .a 5341 to 5704 1 to 378     Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 378/435
(86 %)
26 diff
(94.1 %id)
R40732 whole brain .a 6070 to 6355 314 to 22   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 293/349
(83 %)
14 diff
(96.0 %id)
R15233 whole brain .a 5340 to 5723 1 to 396       396/407
(97 %)
24 diff
(94.2 %id)
R67543 placenta .a 7109 to 7492 1 to 389   fully sequenced,   389/389
(100 %)
3 diff
(99.3 %id)
R67544 placenta .a 7462 to 7738 282 to 1   fully sequenced,   282/282
(100 %)
4 diff
(98.6 %id)
R69868 placenta .a 7381 to 7709 341 to 1   fully sequenced,   341/341
(100 %)
9 diff
(97.4 %id)
R69913 placenta .a 7004 to 7411 1 to 412   fully sequenced,   412/412
(100 %)
4 diff
(99.1 %id)
AF088016   .c 5408 to 6001 1 to 594   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 594/594
(100 %)
1 diff
(99.9 %id)
N47254 multiple sclerosis lesions .c 5461 to 5641 1 to 182       182/187
(97 %)
2 diff
(99.0 %id)
N47255 multiple sclerosis lesions .c 5514 to 5991 482 to 1       482/483
(99 %)
9 diff
(98.2 %id)
N51643 multiple sclerosis lesions .a 7344 to 7742 410 to 2       409/427
(95 %)
0 diff
(100 %id)
W01858 lung .r-u 746 to 1017 1 to 277       277/278
(99 %)
7 diff
(97.5 %id)
W52091 Pancreas, pancreatic islet .a 5315 to 5883 1 to 566       566/569
(99 %)
15 diff
(97.4 %id)
W59969 Pancreas, pancreatic islet .a 5963 to 6375 418 to 1       418/418
(100 %)
8 diff
(98.1 %id)
AA026617 heart .a 5923 to 6355 459 to 29   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 431/432
(99 %)
3 diff
(99.4 %id)
AA026729 heart .a 5746 to 6220 1 to 474       474/474
(100 %)
4 diff
(99.2 %id)
W86970 liver and spleen .a 3253 to 3530 287 to 1     Submitted on the opposite strand 287/291
(98 %)
15 diff
(94.9 %id)
W86971 liver and spleen .q-u 618 to 991 1 to 375     Submitted on the opposite strand 375/375
(100 %)
4 diff
(99.0 %id)
AA777858 liver and spleen .a 5911 to 6352 442 to 1       442/442
(100 %)
1 diff
(99.8 %id)
AA056926 uterus .a 5224 to 5467 1 to 250       250/255
(98 %)
9 diff
(96.5 %id)
AA057071 uterus .a 5974 to 6345 373 to 1       373/373
(100 %)
4 diff
(99.0 %id)
AA099904 uterus .a 5209 to 5818 1 to 605   fully sequenced,   605/605
(100 %)
10 diff
(98.4 %id)
AA102106 uterus .a 5788 to 6371 578 to 1   fully sequenced,   578/578
(100 %)
12 diff
(98.0 %id)
AA668248   .a 6004 to 6375 368 to 1       368/368
(100 %)
10 diff
(97.3 %id)
AA668280   .a 6144 to 6374 230 to 1       230/230
(100 %)
1 diff
(99.6 %id)
AA553519 Schwannoma tumor .s-u 1 to 411 411 to 1   tiling clone,   411/411
(100 %)
0 diff
(100 %id)
AA621788   .a 7301 to 7743 445 to 3       443/445
(99 %)
0 diff
(100 %id)
AA600297   .a 6092 to 6365 281 to 5       277/281
(98 %)
0 diff
(100 %id)
AA931594 carcinoid, lung .c 4647 to 5027 1 to 381     Submitted on the opposite strand 381/381
(100 %)
0 diff
(100 %id)
AA987216 carcinoid, lung .a 5953 to 6367 415 to 1       415/415
(100 %)
1 diff
(99.8 %id)
AI017861 Kidney .a 5933 to 6354 424 to 3       422/424
(99 %)
0 diff
(100 %id)
AI052089 liver and spleen .h 480 to 916 436 to 1   tiling clone,   436/436
(100 %)
3 diff
(99.4 %id)
AI039461   .a 7329 to 7744 425 to 9       417/425
(98 %)
0 diff
(100 %id)
AI052457 liver and spleen .q-u 618 to 938 1 to 321     Submitted on the opposite strand 321/321
(100 %)
1 diff
(99.7 %id)
AI141556 heart .a 7158 to 7742 597 to 13   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 585/585
(100 %)
0 diff
(100 %id)
AI093460 uterus .a 5984 to 6370 387 to 1       387/387
(100 %)
1 diff
(99.8 %id)
AI127033 heart .a 5933 to 6373 443 to 3       441/443
(99 %)
0 diff
(100 %id)
AI130725 heart .p 210 to 746 537 to 1 exact tiling clone,   537/537
(100 %)
0 diff
(100 %id)
AI220065 pooled .a 7395 to 7744 354 to 5       350/354
(98 %)
0 diff
(100 %id)
AI286145 pooled .i-u 2086 to 2454 1 to 369     Submitted on the opposite strand 369/369
(100 %)
23 diff
(93.8 %id)
AI246495 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6126 to 6446 321 to 1       321/321
(100 %)
0 diff
(100 %id)
AI198416 anaplastic oligodendroglioma, brain .a 5890 to 6357 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AI276206 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 7300 to 7738 439 to 1       439/439
(100 %)
0 diff
(100 %id)
AI278486 placenta .a 7291 to 7743 456 to 4       453/456
(99 %)
0 diff
(100 %id)
AI335180 2 pooled tumors (clear cell type), Kidney .a 6400 to 6836 439 to 3       437/439
(99 %)
0 diff
(100 %id)
AI338604   .c 5707 to 6148 458 to 17   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 442/442
(100 %)
3 diff
(99.4 %id)
AI493171 uterus .a 5901 to 6374 474 to 1       474/474
(100 %)
1 diff
(99.8 %id)
AI382726 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 1933 to 2210 280 to 1       280/280
(100 %)
4 diff
(98.6 %id)
AI377837 pooled .a 4884 to 5108 256 to 32   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 225/225
(100 %)
8 diff
(96.5 %id)
AI422365 brain, glioblastoma (pooled) .a 7302 to 7746 446 to 2       445/446
(99 %)
0 diff
(100 %id)
AI424867 pooled .c 4600 to 5056 457 to 1   tiling clone,   457/457
(100 %)
0 diff
(100 %id)
AI580392 Kidney .f 1818 to 2209 392 to 1       392/392
(100 %)
1 diff
(99.8 %id)
AI918266 anaplastic oligodendroglioma, brain .a 7529 to 7744 216 to 1       216/216
(100 %)
2 diff
(99.1 %id)
AI621236 pooled germ cell tumors .a 7435 to 7744 319 to 10       310/319
(97 %)
0 diff
(100 %id)
AI655720 pooled germ cell tumors .a 7435 to 7736 320 to 19   AAA   302/310
(97 %)
0 diff
(100 %id)
AI637778 pooled germ cell tumors .c 5705 to 6148 464 to 21   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 444/444
(100 %)
1 diff
(99.8 %id)
AI636113 Kidney .a 5828 to 6354 526 to 1       526/526
(100 %)
2 diff
(99.7 %id)
AI631935 Kidney .a 5849 to 6374 525 to 1       525/525
(100 %)
2 diff
(99.7 %id)
AI650422 pooled germ cell tumors .a 5988 to 6446 460 to 1       460/460
(100 %)
2 diff
(99.6 %id)
AI807328 carcinoid, lung .a 6025 to 6371 347 to 1       347/347
(100 %)
4 diff
(98.9 %id)
AI912777 carcinoid, lung .a 7163 to 7746 584 to 2       583/584
(99 %)
0 diff
(100 %id)
AI807209 pooled .e 1505 to 2187 684 to 1   tiling clone,   684/684
(100 %)
10 diff
(98.6 %id)
AI807740 pooled .c 4558 to 4980 423 to 1       423/423
(100 %)
3 diff
(99.3 %id)
AI769071 pooled .a 7294 to 7743 457 to 8       450/457
(98 %)
0 diff
(100 %id)
AI817202 pooled .a 7214 to 7698 521 to 38       484/521
(92 %)
0 diff
(100 %id)
AI738738 colon, colon tumor, RER+ .a 5880 to 6355 476 to 1       476/476
(100 %)
3 diff
(99.4 %id)
AI962678 pooled germ cell tumors .a 7331 to 7742 423 to 12   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 412/412
(100 %)
0 diff
(100 %id)
AI985308 Kidney .a 7340 to 7743 404 to 1       404/404
(100 %)
0 diff
(100 %id)
AW003653 brain, four pooled pituitary adenomas .a 7163 to 7746 587 to 4   tiling clone,   584/587
(99 %)
0 diff
(100 %id)
AW149694 brain, medulloblastoma .a 5902 to 6376 477 to 1       477/477
(100 %)
3 diff
(99.4 %id)
AW151967 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 7601 to 7742 169 to 28   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 142/142
(100 %)
0 diff
(100 %id)
AW190746 adenocarcinoma, Pancreas .c 4557 to 4854 298 to 1       298/298
(100 %)
1 diff
(99.7 %id)
AW589353 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5937 to 6358 422 to 1       422/422
(100 %)
2 diff
(99.6 %id)
AW274910 pooled germ cell tumors .a 7368 to 7743 381 to 6       376/381
(98 %)
0 diff
(100 %id)
AW241675 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 7329 to 7742 414 to 1       414/414
(100 %)
0 diff
(100 %id)
AW136937   .a 6338 to 6462 125 to 1       125/125
(100 %)
4 diff
(96.8 %id)
AW204457   .a 6145 to 6446 314 to 13   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 302/305
(99 %)
2 diff
(99.4 %id)
AW517940 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 5975 to 6359 385 to 1       385/385
(100 %)
1 diff
(99.8 %id)
BE049355 adenocarcinoma, Pancreas .a 7413 to 7743 336 to 6       331/336
(98 %)
0 diff
(100 %id)
AW339107 adenocarcinoma, Pancreas .a 7271 to 7743 474 to 2       473/474
(99 %)
0 diff
(100 %id)
AW615204 Kidney .a 7294 to 7744 463 to 13   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 451/451
(100 %)
0 diff
(100 %id)
BE044270 pooled .a 5880 to 6338 459 to 1       459/459
(100 %)
3 diff
(99.4 %id)
BE048457 Kidney .a 6077 to 6355 279 to 1       279/279
(100 %)
0 diff
(100 %id)
BE222391 carcinoid, lung .a 7541 to 7743 209 to 7       203/209
(97 %)
0 diff
(100 %id)
BE219421 carcinoid, lung .a 3699 to 4036 337 to 1       337/411
(81 %)
15 diff
(96.4 %id)
BE552301 pooled germ cell tumors .a 5924 to 6446 523 to 1       523/523
(100 %)
1 diff
(99.9 %id)
CB048164 Prostate .a 7423 to 7742 344 to 24   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 321/321
(100 %)
1 diff
(99.7 %id)
CB048165 Prostate .a 7300 to 7453 1 to 154   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 154/154
(100 %)
0 diff
(100 %id)
BE671509 carcinoid, lung .a 7250 to 7736 504 to 18   AAA   487/493
(98 %)
0 diff
(100 %id)
BE646018 Prostate .a 7333 to 7742 410 to 1       410/410
(100 %)
0 diff
(100 %id)
BF111565 pooled .a 7341 to 7743 406 to 4       403/406
(99 %)
0 diff
(100 %id)
BF109225 pooled .a 7185 to 7743 565 to 6       560/565
(99 %)
0 diff
(100 %id)
BF437003 Prostate .a 6124 to 6305 1 to 182     Submitted on the opposite strand 182/182
(100 %)
0 diff
(100 %id)
BE562771 endometrium, adenocarcinoma cell line, uterus .a 5570 to 6302 1 to 731       731/731
(100 %)
10 diff
(98.7 %id)
BF222939 pooled germ cell tumors .a 7285 to 7744 461 to 2       460/461
(99 %)
0 diff
(100 %id)
BF337236 brain, glioblastoma with EGFR amplification .r-u 457 to 1252 1 to 822   tiling clone,   822/1082
(75 %)
69 diff
(93.7 %id)
BF340916 brain, glioblastoma with EGFR amplification .a 5169 to 5814 27 to 668       642/668
(96 %)
6 diff
(99.2 %id)
BF576579 muscle (skeletal) .a 6768 to 7398 1 to 628       628/803
(78 %)
12 diff
(98.6 %id)
BF670286 muscle (skeletal) .a 6460 to 7128 1 to 664       664/693
(95 %)
13 diff
(98.2 %id)
BG403259 bladder, transitional cell papilloma, cell line .a 6049 to 6537 1 to 489       489/490
(99 %)
12 diff
(97.6 %id)
BG393077 embryonal carcinoma, cell line, testis .a 2401 to 2839 30 to 478       427/478
(89 %)
30 diff
(93.8 %id)
BG426447 Kidney .a 6629 to 7434 1 to 807       807/811
(99 %)
16 diff
(98.1 %id)
BI831278 brain, medulla .k 25 to 587 1 to 564   tiling clone,   564/690
(81 %)
7 diff
(99.0 %id)
BM479650 embryonal carcinoma, cell line, testis .a 5275 to 6270 1 to 998       998/1032
(96 %)
28 diff
(97.3 %id)
CK905364 insulinoma, Pancreas .d 818 to 1397 1 to 580       580/580
(100 %)
9 diff
(98.5 %id)
BQ020028 Chondrosarcoma, Left Pubic Bone .a 7093 to 7744 668 to 17   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 652/652
(100 %)
4 diff
(99.4 %id)
BM998333 lung, Metastatic Chondrosarcoma .a 7158 to 7742 604 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 586/586
(100 %)
1 diff
(99.9 %id)
CB216524 normal endometrium, mid-secretory phase,cycle day 23, uterus .a 6671 to 7305 1 to 635       635/635
(100 %)
0 diff
(100 %id)
BU153099 embryonal carcinoma, cell line, testis .a 2302 to 2913 1 to 625       625/890
(70 %)
22 diff
(97.6 %id)
BQ889468 dorsal root ganglia .a 1771 to 2623 9 to 869       861/910
(94 %)
19 diff
(98.0 %id)
BQ938948 sciatic nerve .a 4948 to 5813 1 to 870   tiling clone,   870/871
(99 %)
12 diff
(98.7 %id)
BC062367 Spleen .f 816 to 2209 840 to 2233 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 2233/2233
(100 %)
0 diff
(100 %id)
BQ877145 epidermoid carcinoma, cell line, lung .a 4046 to 4823 1 to 789       789/1001
(78 %)
30 diff
(97.1 %id)
BU554129 ovary, teratocarcinoma, cell line .g 1 to 848 1 to 853 Y12I Y13M T15H K17S P18L ... tiling clone,   853/892
(95 %)
9 diff
(99.0 %id)
BU556664 ovary, teratocarcinoma, cell line .a 4645 to 5467 1 to 833       833/973
(85 %)
17 diff
(98.3 %id)
CX870322 embryonic stem .a 6949 to 7744 814 to 19   tiling clone, AAA Submitted on the opposite strand 796/796
(100 %)
0 diff
(100 %id)
CX870332 embryonic stem .a 4277 to 5142 1 to 866   tiling clone,   866/866
(100 %)
0 diff
(100 %id)
CX783802 human embryonic stem cells .r-u 687 to 1006 1 to 320       320/320
(100 %)
2 diff
(99.4 %id)
CX753748 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .e 1081 to 1731 91 to 739   tiling clone, Submitted on the opposite strand 619/741
(83 %)
70 diff
(90.6 %id)
CD643150 Embryonic Stem cells .l 371 to 1152 1 to 773   tiling clone,   773/816
(94 %)
21 diff
(97.5 %id)
CF146379 CNCAP(3)T-225 cell line, Prostate .a 6366 to 7038 8 to 679   tiling clone,   672/679
(98 %)
2 diff
(99.8 %id)
TI_57176956   .k 25 to 689 68 to 740 V134S N135K G136W C137M S138F ... tiling clone,   673/757
(88 %)
32 diff
(95.8 %id)
BP281753 bone marrow .l 1 to 581 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
BP282317 bone marrow .l 1 to 589 1 to 589   tiling clone,   589/589
(100 %)
0 diff
(100 %id)
CB143636 Liver .r-u 669 to 1007 1 to 339       339/339
(100 %)
2 diff
(99.5 %id)
BP289722 lung .d 637 to 1217 1 to 582   tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
DA646855 mammary gland .q-u 1 to 380 2 to 381   capped   380/380
(100 %)
0 diff
(100 %id)
DB361627 mammary gland .q-u 1616 to 2180 568 to 1       568/571
(99 %)
10 diff
(98.3 %id)
DA649493   .a 3725 to 4256 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
CD579546 brain .a 2112 to 2670 1 to 559       559/715
(78 %)
6 diff
(99.2 %id)
NM_004742.2   .c 816 to 6154 840 to 6178 exact RefSeq,   6178/6178
(100 %)
0 diff
(100 %id)
NM_015520.1   .b 816 to 7211 840 to 7235 exact RefSeq,   7235/7235
(100 %)
0 diff
(100 %id)
NM_001033057.1   .a 816 to 7038 840 to 7062 exact RefSeq,   7062/7062
(100 %)
0 diff
(100 %id)
DA714603   .a 4066 to 4476 2 to 413   capped   412/412
(100 %)
1 diff
(99.8 %id)
DA789152 brain .a 2183 to 2760 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
CV574828 cornea, eye .i-u 2031 to 2625 1 to 595       595/595
(100 %)
0 diff
(100 %id)
CD721895 eye, lacrimal gland .e 116 to 740 1 to 623   tiling clone,   623/623
(100 %)
1 diff
(99.9 %id)
CK430330 eye, lacrimal gland .a 6004 to 6593 1 to 591   tiling clone,   591/591
(100 %)
2 diff
(99.7 %id)
AU134100 ovary, tumor tissue .a 4539 to 5309 2 to 774   capped   773/773
(100 %)
4 diff
(99.5 %id)
AU155206 ovary, tumor tissue .a 5851 to 6374 523 to 1       523/525
(99 %)
5 diff
(99.1 %id)
BM789196 stomach .a 5363 to 6055 1 to 693   tiling clone,   693/693
(100 %)
0 diff
(100 %id)
BM763095 myeloma .a 3613 to 4281 1 to 669       669/669
(100 %)
0 diff
(100 %id)
BM847101 myeloma .a 3613 to 4135 1 to 522       522/522
(100 %)
2 diff
(99.7 %id)
BM848545 myeloma .a 3613 to 4008 1 to 396       396/396
(100 %)
0 diff
(100 %id)
BM848605 myeloma .a 3613 to 4085 1 to 471       471/471
(100 %)
2 diff
(99.6 %id)
BM849220 myeloma .a 3613 to 4270 1 to 658       658/658
(100 %)
0 diff
(100 %id)
BM850899 stomach .a 5636 to 6083 1 to 448       448/448
(100 %)
2 diff
(99.6 %id)
DA897844 skeletal muscle .r-u 514 to 1072 2 to 560   tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
DA945283 Spleen .s-u 24 to 580 2 to 558   tiling clone, capped   557/558
(99 %)
1 diff
(99.9 %id)
DA953750 Spleen .a 5352 to 5904 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DA962238 stomach .r-u 1 to 854 2 to 854   tiling clone, capped   853/853
(100 %)
10 diff
(98.9 %id)
DB334309 stomach .r-u 1323 to 1828 506 to 1 P28X tiling clone,   506/506
(100 %)
4 diff
(99.3 %id)
DR003592 hippocampus .a 392 to 806 9 to 423       415/423
(98 %)
6 diff
(98.6 %id)
DB025577 testis .k 24 to 570 2 to 548   tiling clone, capped   547/547
(100 %)
1 diff
(99.9 %id)
DB033065 testis .o 1 to 572 2 to 573 exact tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DB053457 testis .k 1 to 567 2 to 568   tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DB057823 testis .a 4458 to 4981 2 to 528   capped   527/527
(100 %)
3 diff
(99.5 %id)
DB075350 testis .m 1 to 555 2 to 559 Q39R T164Q E165T W167E T168W ... tiling clone, capped   558/558
(100 %)
6 diff
(99.0 %id)
DB081147 testis .a 1850 to 2407 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BP361317 thalamus .d 16 to 596 1 to 581       581/583
(99 %)
2 diff
(99.7 %id)
DB118296 thymus .a 4013 to 4577 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
TI_149286260   .a 6995 to 7742 822 to 79   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 744/800
(93 %)
27 diff
(96.7 %id)
TI_149293644   .a 5466 to 6378 971 to 69       903/1083
(83 %)
0 diff
(100 %id)
TI_149293839   .a 7168 to 7742 665 to 87   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 579/938
(61 %)
65 diff
(93.1 %id)
TI_154020244   .a 5663 to 6378 777 to 61       717/777
(92 %)
0 diff
(100 %id)
TI_154178810   .a 6366 to 7225 76 to 938       863/863
(100 %)
10 diff
(98.9 %id)
U80754   .b 950 to 2980 1 to 2031       2031/2031
(100 %)
1 diff
(100.0 %id)
U96115   .a 956 to 1614 1 to 659       659/673
(97 %)
1 diff
(99.9 %id)
BM971888 lung .a 7154 to 7742 607 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 589/589
(100 %)
5 diff
(99.2 %id)
BU682672 lung .a 5727 to 6355 644 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 629/629
(100 %)
2 diff
(99.7 %id)
CB241134 Human Lung Epithelial cells, lung .a 7015 to 7742 747 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 729/729
(100 %)
3 diff
(99.6 %id)
BM717629 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4050 to 4478 1 to 429   fully sequenced,   429/429
(100 %)
0 diff
(100 %id)
BU739191 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4448 to 5071 624 to 1   tiling clone, fully sequenced,   624/624
(100 %)
3 diff
(99.6 %id)
BM716032 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4088 to 4492 1 to 405   fully sequenced,   405/405
(100 %)
0 diff
(100 %id)
BU739777 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4462 to 5071 610 to 1   fully sequenced,   610/610
(100 %)
2 diff
(99.7 %id)
BM930454 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7042 to 7303 1 to 262       262/266
(98 %)
1 diff
(99.7 %id)
BQ187224 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6752 to 7199 1 to 448   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 448/448
(100 %)
0 diff
(100 %id)
CK300559 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7169 to 7736 582 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 564/564
(100 %)
1 diff
(99.9 %id)
BQ187397 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 5800 to 6148 1 to 349   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 349/349
(100 %)
0 diff
(100 %id)
CA436947 Bone, Subchondral Bone .a 7326 to 7744 437 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 419/419
(100 %)
0 diff
(100 %id)
CA438356 lung, Metastatic Chondrosarcoma .a 5840 to 6355 531 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 516/516
(100 %)
1 diff
(99.9 %id)
BQ576182 Chondrosarcoma Grade II, Left Pelvis .a 7015 to 7744 747 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 729/729
(100 %)
1 diff
(99.9 %id)
TI_151734192   .a 6901 to 7736 916 to 89   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 828/929
(89 %)
16 diff
(98.3 %id)
TI_151734382   .c 5800 to 6148 435 to 87   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 349/934
(37 %)
0 diff
(100 %id)
DB256356 uterus .a 5370 to 5948 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DB265275 uterus .a 5372 to 5934 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB278926 uterus .a 1225 to 1765 2 to 542   capped   541/542
(99 %)
1 diff
(99.9 %id)
DB280347 uterus .a 78 to 623 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
W26805 eye, retina .t-u 1 to 234 27 to 260 exact tiling clone,   234/281
(83 %)
2 diff
(99.3 %id)
AF401655.
matches multiple genes
  .a 4539 to 5309 2 to 774     This clone was ignored, also hits gene gleenobo 773/773
(100 %)
4 diff
(99.5 %id)
AF401655.
matches multiple genes
  .a 5851 to 6374 523 to 1     This clone was ignored, also hits gene gleenobo 523/525
(99 %)
5 diff
(99.1 %id)
AK024170.
matches multiple genes
mammary gland .a 5363 to 6055 1 to 693   tiling clone, available from FLJ, This clone was ignored, also hits gene donarbo, royura 693/693
(100 %)
0 diff
(100 %id)
AK024170.
matches multiple genes
mammary gland .a 3613 to 4281 1 to 669   available from FLJ, This clone was ignored, also hits gene donarbo, royura 669/669
(100 %)
0 diff
(100 %id)
AK024170.
matches multiple genes
mammary gland .a 3613 to 4135 1 to 522   available from FLJ, This clone was ignored, also hits gene donarbo, royura 522/522
(100 %)
2 diff
(99.7 %id)
AK310365.
matches multiple genes
testis .a 3613 to 4008 1 to 396     This clone was ignored, also hits gene royura, skeynobo 396/396
(100 %)
0 diff
(100 %id)
AK310365.
matches multiple genes
testis .a 3613 to 4085 1 to 471     This clone was ignored, also hits gene royura, skeynobo 471/471
(100 %)
2 diff
(99.6 %id)
AK310365.
matches multiple genes
testis .a 3613 to 4270 1 to 658     This clone was ignored, also hits gene royura, skeynobo 658/658
(100 %)
0 diff
(100 %id)
BI430544.
matches multiple genes
endometrium .a 5636 to 6083 1 to 448   AAA Suspected internal deletion, this clone was ignored, also hits gene jorsweyby 448/448
(100 %)
2 diff
(99.6 %id)
BI430544.
matches multiple genes
endometrium .r-u 514 to 1072 2 to 560   tiling clone, AAA Suspected internal deletion, this clone was ignored, also hits gene jorsweyby 559/559
(100 %)
1 diff
(99.9 %id)
BI430553.
matches multiple genes
endometrium .s-u 24 to 580 2 to 558   tiling clone, AAA Suspected internal deletion, this clone was ignored, also hits gene jorsweyby 557/558
(99 %)
1 diff
(99.9 %id)
BI430553.
matches multiple genes
endometrium .a 5352 to 5904 2 to 555   AAA Suspected internal deletion, this clone was ignored, also hits gene jorsweyby 554/554
(100 %)
2 diff
(99.7 %id)
DA105353 cerebellum .r-u 1 to 854 2 to 854   tiling clone, capped   853/853
(100 %)
10 diff
(98.9 %id)
T69604 Liver .r-u 1323 to 1828 506 to 1   tiling clone,   506/506
(100 %)
4 diff
(99.3 %id)
T69677 Liver .a 392 to 806 9 to 423       415/423
(98 %)
6 diff
(98.6 %id)
BG399078 Kidney .k 24 to 570 2 to 548   tiling clone,   547/547
(100 %)
1 diff
(99.9 %id)
BU159638 eye, retinoblastoma .o 1 to 572 2 to 573   tiling clone,   572/572
(100 %)
0 diff
(100 %id)
BQ706291 Spleen .k 1 to 567 2 to 568   tiling clone, available from MGC,   567/567
(100 %)
1 diff
(99.9 %id)
BM762845 lymph node, stomach .a 4458 to 4981 2 to 528       527/527
(100 %)
3 diff
(99.5 %id)
BM844027 lymph node, stomach .m 1 to 555 2 to 559   tiling clone,   558/558
(100 %)
6 diff
(99.0 %id)
BM843919 lymph node, stomach .a 1850 to 2407 2 to 559       558/558
(100 %)
0 diff
(100 %id)
BQ446527.
matches multiple genes
Knee, Osteoarthritic Cartilage .d 16 to 596 1 to 581     This clone was ignored, also hits gene jarbarbo, royura 581/583
(99 %)
2 diff
(99.7 %id)
BQ446527.
matches multiple genes
Knee, Osteoarthritic Cartilage .a 4013 to 4577 2 to 566     This clone was ignored, also hits gene jarbarbo, royura 565/565
(100 %)
0 diff
(100 %id)
BQ446527.
matches multiple genes
Knee, Osteoarthritic Cartilage .a 6995 to 7742 822 to 79     This clone was ignored, also hits gene jarbarbo, royura 744/800
(93 %)
27 diff
(96.7 %id)
TI_149293644   .a 5466 to 6378 971 to 69       903/1083
(83 %)
0 diff
(100 %id)
TI_149293839   .a 7168 to 7742 665 to 87   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 579/938
(61 %)
65 diff
(93.1 %id)
TI_154020244   .a 5663 to 6378 777 to 61       717/777
(92 %)
0 diff
(100 %id)
TI_154178810   .a 6366 to 7225 76 to 938       863/863
(100 %)
10 diff
(98.9 %id)
U80754   .b 950 to 2980 1 to 2031       2031/2031
(100 %)
1 diff
(100.0 %id)
U96115   .a 956 to 1614 1 to 659       659/673
(97 %)
1 diff
(99.9 %id)
BM971888 lung .a 7154 to 7742 607 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 589/589
(100 %)
5 diff
(99.2 %id)
BU682672 lung .a 5727 to 6355 644 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 629/629
(100 %)
2 diff
(99.7 %id)
CB241134 Human Lung Epithelial cells, lung .a 7015 to 7742 747 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 729/729
(100 %)
3 diff
(99.6 %id)
CB241134 Human Lung Epithelial cells, lung .a 7015 to 7742 747 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 729/729
(100 %)
3 diff
(99.6 %id)
BM717629 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4050 to 4478 1 to 429   fully sequenced,   429/429
(100 %)
0 diff
(100 %id)
BM717629 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4050 to 4478 1 to 429   fully sequenced,   429/429
(100 %)
0 diff
(100 %id)
BU739191 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4448 to 5071 624 to 1   tiling clone, fully sequenced,   624/624
(100 %)
3 diff
(99.6 %id)
BU739191 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4448 to 5071 624 to 1   tiling clone, fully sequenced,   624/624
(100 %)
3 diff
(99.6 %id)
BM716032 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4088 to 4492 1 to 405   fully sequenced,   405/405
(100 %)
0 diff
(100 %id)
BM716032 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4088 to 4492 1 to 405   fully sequenced,   405/405
(100 %)
0 diff
(100 %id)
BU739777 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4462 to 5071 610 to 1   fully sequenced,   610/610
(100 %)
2 diff
(99.7 %id)
BU739777 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 4462 to 5071 610 to 1   fully sequenced,   610/610
(100 %)
2 diff
(99.7 %id)
BM930454 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7042 to 7303 1 to 262       262/266
(98 %)
1 diff
(99.7 %id)
BM930454 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7042 to 7303 1 to 262       262/266
(98 %)
1 diff
(99.7 %id)
BQ187224 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6752 to 7199 1 to 448   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 448/448
(100 %)
0 diff
(100 %id)
BQ187224 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6752 to 7199 1 to 448   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 448/448
(100 %)
0 diff
(100 %id)
CK300559 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7169 to 7736 582 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 564/564
(100 %)
1 diff
(99.9 %id)
CK300559 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 7169 to 7736 582 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 564/564
(100 %)
1 diff
(99.9 %id)
BQ187397 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 5800 to 6148 1 to 349   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 349/349
(100 %)
0 diff
(100 %id)
BQ187397 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 5800 to 6148 1 to 349   tiling clone, AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 349/349
(100 %)
0 diff
(100 %id)
CA436947 Bone, Subchondral Bone .a 7326 to 7744 437 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 419/419
(100 %)
0 diff
(100 %id)
CA436947 Bone, Subchondral Bone .a 7326 to 7744 437 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 419/419
(100 %)
0 diff
(100 %id)
CA438356 lung, Metastatic Chondrosarcoma .a 5840 to 6355 531 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 516/516
(100 %)
1 diff
(99.9 %id)
CA438356 lung, Metastatic Chondrosarcoma .a 5840 to 6355 531 to 16   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 516/516
(100 %)
1 diff
(99.9 %id)
BQ576182 Chondrosarcoma Grade II, Left Pelvis .a 7015 to 7744 747 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 729/729
(100 %)
1 diff
(99.9 %id)
BQ576182 Chondrosarcoma Grade II, Left Pelvis .a 7015 to 7744 747 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 729/729
(100 %)
1 diff
(99.9 %id)
TI_151734192   .a 6901 to 7736 916 to 89   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 828/929
(89 %)
16 diff
(98.3 %id)
TI_151734382   .c 5800 to 6148 435 to 87   AAA Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base) 349/934
(37 %)
0 diff
(100 %id)
DB256356 uterus .a 5370 to 5948 2 to 581   capped   580/580
(100 %)
2 diff
(99.7 %id)
DB265275 uterus .a 5372 to 5934 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB278926 uterus .a 1225 to 1765 2 to 542   capped   541/542
(99 %)
1 diff
(99.9 %id)
DB280347 uterus .a 78 to 623 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
W26805 eye, retina .t-u 1 to 234 27 to 260 exact tiling clone,   234/281
(83 %)
2 diff
(99.3 %id)
W26805 eye, retina .t-u 1 to 234 27 to 260 exact tiling clone,   234/281
(83 %)
2 diff
(99.3 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k, .l, .m, .n, .o, .p, .q-u, .r-u, .s-u, .t-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI