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Gene B3GNT6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
54 supporting clones for gene B3GNT6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA439499 tongue, tumor tissue .a 1 to 423 2 to 426   tiling clone, capped   425/442
(96 %)
7 diff
(98.5 %id)
DA448596 tongue, tumor tissue .a 38 to 575 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
NM_138706.3   .a 50 to 2545 1 to 2493 G317E A318R R319A R320G P321L ... RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 2493/2493
(100 %)
3 diff
(99.9 %id)
DA437068 tongue, tumor tissue .a 51 to 647 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
AK292773 trachea .a 57 to 1560 1 to 1501 G317E A318R R319A R320G P321L ... tiling clone,   1501/1501
(100 %)
3 diff
(99.9 %id)
BP220750 colon .a 57 to 615 1 to 559       559/559
(100 %)
3 diff
(99.5 %id)
BP270896 small intestine .a 57 to 638 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DB210253 trachea .a 57 to 575 2 to 520   capped   519/519
(100 %)
0 diff
(100 %id)
DA425986 colon .a 58 to 623 2 to 567   capped   566/570
(99 %)
1 diff
(99.9 %id)
DA428581 colon .a 58 to 886 2 to 563   capped   492/563
(87 %)
13 diff
(97.7 %id)
DA441109 tongue, tumor tissue .a 58 to 628 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA443682 tongue, tumor tissue .a 58 to 632 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA445721 tongue, tumor tissue .a 58 to 625 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB196279 trachea .a 58 to 511 2 to 455   capped   454/454
(100 %)
0 diff
(100 %id)
DB197995 trachea .a 58 to 640 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB202986 trachea .a 58 to 637 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB207217 trachea .a 58 to 575 2 to 520   capped   519/519
(100 %)
1 diff
(99.9 %id)
DB210219 trachea .a 58 to 555 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DB230715 trachea .a 58 to 595 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
AK313682 tongue, tumor tissue .a 69 to 1295 1 to 1224       1224/1224
(100 %)
4 diff
(99.7 %id)
DA441508 tongue, tumor tissue .a 70 to 544 2 to 476   capped   475/475
(100 %)
0 diff
(100 %id)
AK172863 ileal mucosa .a 75 to 2545 1 to 2468 D164N G317E A318R R319A R320G ... tiling clone, available from FLJ,   2468/2468
(100 %)
5 diff
(99.8 %id)
BP383116 ilea mucosa .a 75 to 564 1 to 493       493/715
(68 %)
8 diff
(98.9 %id)
DA766215 tongue .a 76 to 642 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB189640 lung, tumor tissue .a 76 to 570 2 to 496   capped   495/495
(100 %)
0 diff
(100 %id)
DA453715 tongue, tumor tissue .a 77 to 575 2 to 500   capped   499/499
(100 %)
1 diff
(99.8 %id)
DB197923 trachea .a 79 to 654 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DB199975 trachea .a 79 to 632 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA460054 tongue, tumor tissue .a 86 to 644 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DR422565 eye, Pterygium .a 89 to 801 1 to 713       713/713
(100 %)
1 diff
(99.9 %id)
BC103908 PCR rescued clones .a 101 to 1705 1 to 1602 G317E A318R R319A R320G P321L ...     1602/1602
(100 %)
3 diff
(99.9 %id)
BC103909 PCR rescued clones .a 101 to 1705 1 to 1602 G317E A318R R319A R320G P321L ...     1602/1602
(100 %)
3 diff
(99.9 %id)
BC103910 PCR rescued clones .a 101 to 1705 1 to 1602 G317E A318R R319A R320G P321L ...     1602/1602
(100 %)
3 diff
(99.9 %id)
DA447072 tongue, tumor tissue .a 106 to 678 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB234510 trachea .a 112 to 584 2 to 475   capped   474/474
(100 %)
1 diff
(99.8 %id)
AB073740   .a 138 to 1295 1 to 1155       1155/1155
(100 %)
3 diff
(99.8 %id)
BC025357 Pancreas, epithelioid carcinoma .a 459 to 2545 1 to 2084   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 2084/2084
(100 %)
6 diff
(99.8 %id)
AW182889 cervix, tumor .a 517 to 1007 492 to 1       492/492
(100 %)
16 diff
(96.8 %id)
CD636499   .a 836 to 1126 1 to 295   tiling clone,   295/297
(99 %)
17 diff
(94.3 %id)
CD636504   .a 836 to 1245 1 to 392       392/393
(99 %)
13 diff
(96.7 %id)
CD636506   .a 836 to 1245 1 to 406       406/407
(99 %)
11 diff
(97.3 %id)
CD636501   .a 838 to 1245 404 to 1   tiling clone,   404/406
(99 %)
6 diff
(98.6 %id)
CD636503   .a 838 to 1245 406 to 1       406/408
(99 %)
14 diff
(96.6 %id)
CD636505   .a 838 to 1245 404 to 1       404/418
(96 %)
6 diff
(98.6 %id)
CD636507   .a 838 to 1245 402 to 1       402/404
(99 %)
8 diff
(98.1 %id)
CD636502   .a 844 to 1245 1 to 399       399/400
(99 %)
7 diff
(98.3 %id)
CD636508   .a 845 to 1245 1 to 394       394/396
(99 %)
18 diff
(95.5 %id)
CD636500   .a 940 to 1240 301 to 1       301/301
(100 %)
18 diff
(94.1 %id)
BG832315 epithelioid carcinoma cell line, Pancreas .a 975 to 1297 562 to 899   tiling clone, available from MGC,   713/899
(79 %)
93 diff
(89.7 %id)
AW192172 adenocarcinoma, Pancreas .a 1034 to 1423 1 to 387     Submitted on the opposite strand 387/387
(100 %)
3 diff
(99.3 %id)
BX477104   .a 2126 to 2470 1 to 345       345/345
(100 %)
4 diff
(98.9 %id)
DB313016 colon .a 2139 to 2545 407 to 1       407/407
(100 %)
0 diff
(100 %id)
BX480039   .a 2141 to 2638 1 to 497   tiling clone,   497/497
(100 %)
2 diff
(99.6 %id)
BP220415 colon .b 1 to 568 1 to 568 T6A V19A W20C K29E F33S ... tiling clone,   568/568
(100 %)
12 diff
(97.9 %id)
AK127544 colon Gene B3GNT6, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC