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Gene AVILTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
95 supporting clones for gene AVIL back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK314362 brain AVIL.a 1 to 2890 2 to 2891 K204E tiling clone,   2891/2891
(100 %)
2 diff
(100.0 %id)
DA218430 brain AVIL.a 1 to 544 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
AF041449   AVIL.a 402 to 3118 1 to 2718 K204E G445D tiling clone,   2718/2718
(100 %)
4 diff
(99.9 %id)
NM_006576.3   AVIL.a 402 to 3393 1 to 2992 exact RefSeq, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 2992/2992
(100 %)
0 diff
(100 %id)
BE294460 muscle, rhabdomyosarcoma AVIL.a 491 to 1084 1 to 595       595/595
(100 %)
6 diff
(99.0 %id)
BF309044 muscle, rhabdomyosarcoma AVIL.a 495 to 1191 25 to 719       697/755
(92 %)
13 diff
(98.3 %id)
BF309064 muscle, rhabdomyosarcoma AVIL.a 791 to 1565 1 to 773       773/807
(95 %)
32 diff
(96.1 %id)
BI114542 muscle, rhabdomyosarcoma AVIL.a 791 to 1385 1 to 597       597/597
(100 %)
4 diff
(99.4 %id)
FN133892 breast carcinoma AVIL.a 1357 to 1425 70 to 1     Submitted on the opposite strand 70/71
(98 %)
1 diff
(98.6 %id)
BQ720945 sympathetic trunk AVIL.a 1641 to 2342 24 to 733       710/923
(76 %)
21 diff
(97.8 %id)
BQ893208 dorsal root ganglia AVIL.a 1697 to 2394 1 to 699       699/877
(79 %)
2 diff
(99.8 %id)
AA360960   AVIL.a 1754 to 2085 1 to 332       332/332
(100 %)
1 diff
(99.7 %id)
AW900308 nervous_normal AVIL.a 1835 to 2247 446 to 32       415/446
(93 %)
0 diff
(100 %id)
CD709134 normal nasopharynx AVIL.a 1922 to 2481 29 to 588       559/588
(95 %)
9 diff
(98.5 %id)
CD622940   AVIL.a 2111 to 2392 1 to 282       282/300
(94 %)
7 diff
(97.7 %id)
BG433816 Kidney AVIL.a 2347 to 2981 1 to 638       638/1038
(61 %)
14 diff
(98.7 %id)
AA098885 uterus AVIL.a 2572 to 3108 1 to 544       544/544
(100 %)
9 diff
(98.4 %id)
AW081692 colon, moderately differentiated adenocarcinoma AVIL.a 2706 to 3390 697 to 16   tiling clone, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 682/682
(100 %)
8 diff
(98.9 %id)
BC111730 PCR rescued clones AVIL.b 1 to 2735 1 to 2735 K197E tiling clone,   2735/2735
(100 %)
1 diff
(100.0 %id)
AA410633 ovarian tumor, ovary AVIL.b 2475 to 2885 1 to 419   fully sequenced,   419/419
(100 %)
5 diff
(98.9 %id)
AA434298 ovarian tumor, ovary AVIL.b 2475 to 2851 1 to 377   fully sequenced,   377/377
(100 %)
0 diff
(100 %id)
AW150098 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors AVIL.b 2478 to 3099 623 to 3       621/637
(97 %)
0 diff
(100 %id)
AI697610 carcinoid, lung AVIL.b 2480 to 3093 614 to 1       614/614
(100 %)
6 diff
(99.1 %id)
AI765074 Kidney AVIL.b 2481 to 3096 616 to 1       616/623
(98 %)
5 diff
(99.2 %id)
AI458294 carcinoid, lung AVIL.b 2486 to 3093 608 to 1       608/608
(100 %)
0 diff
(100 %id)
AI458701 carcinoid, lung AVIL.b 2486 to 3093 608 to 1       608/608
(100 %)
0 diff
(100 %id)
BU617924 Bone, Subchondral Bone AVIL.b 2499 to 3096 612 to 19   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 594/594
(100 %)
4 diff
(99.4 %id)
AA534371 colon AVIL.b 2510 to 3093 584 to 1       584/584
(100 %)
0 diff
(100 %id)
AI928739 anaplastic oligodendroglioma, brain AVIL.b 2531 to 2863 334 to 1       334/334
(100 %)
3 diff
(99.2 %id)
BQ720095 sympathetic trunk AVIL.b 2608 to 3098 1 to 491       491/1223
(40 %)
1 diff
(100.0 %id)
AW293864   AVIL.b 2615 to 3093 496 to 18   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 479/479
(100 %)
5 diff
(99.0 %id)
BM966946 Islets of Langerhans, Pancreas AVIL.b 2621 to 3089 1 to 469       469/469
(100 %)
2 diff
(99.6 %id)
BE139483 serous papillary carcinoma, high grade, 2pooled tumors, uterus AVIL.b 2680 to 3096 417 to 1       417/417
(100 %)
0 diff
(100 %id)
AI288722 carcinoid, lung AVIL.b 2688 to 3102 415 to 1   tiling clone,   415/415
(100 %)
0 diff
(100 %id)
AI215450 pooled AVIL.b 2755 to 3094 340 to 1       340/340
(100 %)
0 diff
(100 %id)
AA427733 ovarian tumor, ovary AVIL.b 2821 to 3094 274 to 1   fully sequenced,   274/274
(100 %)
0 diff
(100 %id)
AA410634 ovarian tumor, ovary AVIL.b 2855 to 3094 241 to 1   fully sequenced,   241/241
(100 %)
0 diff
(100 %id)
AI468755 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus AVIL.b 2885 to 3099 242 to 28       215/242
(88 %)
0 diff
(100 %id)
DB534209.
matches multiple genes
hippocampus AVIL.b 2890 to 3080 365 to 174     also hits gene FAM119BandTSFM 192/366
(52 %)
6 diff
(98.4 %id)
DB544839.
matches multiple genes
hippocampus AVIL.b 2890 to 3332 443 to 1   tiling clone, also hits gene FAM119BandTSFM 443/444
(99 %)
0 diff
(100 %id)
AI015749   AVIL.b 2910 to 3093 194 to 11   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 184/184
(100 %)
3 diff
(98.4 %id)
AA578783   AVIL.c-u 1 to 328 8 to 334   tiling clone,   327/334
(97 %)
6 diff
(98.3 %id)
BF802237 colon_ins AVIL.c-u 212 to 490 302 to 23     Submitted on the opposite strand 280/314
(89 %)
0 diff
(100 %id)
AI732570 colon, tumor AVIL.c-u 254 to 745 492 to 1   tiling clone,   492/492
(100 %)
0 diff
(100 %id)
AA134460 colon, tumor AVIL.c-u 314 to 746 435 to 1       435/436
(99 %)
2 diff
(99.6 %id)
AI871333 anaplastic oligodendroglioma, brain AVIL.c-u 317 to 737 420 to 1       420/420
(100 %)
4 diff
(99.1 %id)
AI744693 pooled AVIL.c-u 390 to 739 350 to 1       350/350
(100 %)
8 diff
(97.8 %id)
DA619192   AVIL.c-u 432 to 913 2 to 483   tiling clone, capped   482/482
(100 %)
0 diff
(100 %id)
AI563999 anaplastic oligodendroglioma, brain AVIL.c-u 458 to 738 281 to 1       281/281
(100 %)
0 diff
(100 %id)
AI610347 poorly differentiated adenocarcinoma withsignet ring cell features, stomach AVIL.c-u 459 to 754 307 to 12   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 296/311
(95 %)
0 diff
(100 %id)
BF873483 lung_tumor AVIL.c-u 1213 to 1678 1 to 466   tiling clone,   466/466
(100 %)
1 diff
(99.8 %id)
DB320179   AVIL.c-u 1676 to 2232 557 to 1   tiling clone,   557/557
(100 %)
0 diff
(100 %id)
TI_1948238375   AVIL.d 1 to 913 1049 to 129   tiling clone,   921/1258
(73 %)
27 diff
(97.9 %id)
TI_1948238158   AVIL.d 89 to 913 951 to 126   tiling clone,   826/1300
(63 %)
43 diff
(96.7 %id)
TI_1948238612   AVIL.d 89 to 913 963 to 127   tiling clone,   837/1374
(60 %)
31 diff
(97.8 %id)
TI_1948238376   AVIL.d 243 to 913 803 to 133       671/1328
(50 %)
12 diff
(99.1 %id)
TI_1948238840   AVIL.d 243 to 913 793 to 122       672/1282
(52 %)
16 diff
(98.8 %id)
TI_1948238157   AVIL.d 244 to 913 747 to 67       681/1204
(56 %)
42 diff
(96.6 %id)
TI_1948238611   AVIL.d 245 to 913 767 to 94       674/1276
(52 %)
10 diff
(99.3 %id)
AI925174 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus AVIL.d 342 to 1024 688 to 1       688/700
(98 %)
20 diff
(97.2 %id)
TI_1948238841   AVIL.d 343 to 913 697 to 125       573/1372
(41 %)
48 diff
(96.6 %id)
AA034149 liver and spleen AVIL.d 350 to 513 1 to 165   fully sequenced,   165/165
(100 %)
1 diff
(99.4 %id)
BF309923 muscle, rhabdomyosarcoma AVIL.d 430 to 1053 1 to 623   tiling clone,   623/718
(86 %)
12 diff
(98.4 %id)
AA034150 liver and spleen AVIL.d 452 to 1024 571 to 1   fully sequenced,   571/571
(100 %)
2 diff
(99.7 %id)
AW410212 muscle, rhabdomyosarcoma AVIL.d 547 to 1043 497 to 1   tiling clone, available from MGC,   497/497
(100 %)
0 diff
(100 %id)
DA924103 small intestine AVIL.e 1 to 567 2 to 568 exact tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
DA811320 brain AVIL.f-u 1 to 572 2 to 572 L16C L20* tiling clone, capped   571/571
(100 %)
8 diff
(98.6 %id)
CA848547 Pancreas, Purified pancreatic islet AVIL.g 1 to 573 1 to 573 exact tiling clone, fully sequenced,   573/573
(100 %)
0 diff
(100 %id)
CA848258 Pancreas, Purified pancreatic islet AVIL.g 543 to 1020 478 to 1   tiling clone, fully sequenced,   478/478
(100 %)
2 diff
(99.6 %id)
AU122557 mammary gland AVIL.h 1 to 790 2 to 796   tiling clone, capped, AAA   795/807
(98 %)
24 diff
(97.1 %id)
AK022448 mammary gland AVIL.h 16 to 1697 18 to 1701 exact tiling clone, available from FLJ,   1684/1684
(100 %)
6 diff
(99.7 %id)
DB575813.
matches multiple genes
hypothalamus AVIL.h 340 to 830 491 to 1   tiling clone, also hits gene FAM119BandTSFM 491/491
(100 %)
2 diff
(99.6 %id)
AA173779   AVIL.h 341 to 868 1 to 527     Submitted on the opposite strand 527/529
(99 %)
2 diff
(99.7 %id)
AI249122 liver and spleen AVIL.h 1004 to 1401 392 to 1       392/408
(96 %)
11 diff
(97.4 %id)
BI711189 insulinoma, Pancreas AVIL.h 1014 to 1418 405 to 1       405/405
(100 %)
0 diff
(100 %id)
AU148116 mammary gland AVIL.h 1163 to 1697 533 to 1       533/536
(99 %)
17 diff
(96.9 %id)
BX504878   AVIL.i-u -8 to 592 1 to 601 exact tiling clone,   601/601
(100 %)
2 diff
(99.7 %id)
DB327408 brain AVIL.j-u 1 to 533 533 to 1 exact tiling clone,   533/533
(100 %)
0 diff
(100 %id)
BF359766 marrow AVIL.k 1 to 226 210 to 435 N10Y tiling clone,   226/435
(51 %)
7 diff
(98.4 %id)
BG005184 placenta_normal AVIL.l-u 1 to 217 21 to 238 L2T N3D F35L tiling clone,   218/241
(90 %)
6 diff
(97.6 %id)
AA366630 Pancreas Gene AVIL, variant not shown              
AF318328   Gene AVIL, variant not shown              
AW962438   Gene AVIL, variant not shown              
BE706069 head_neck Gene AVIL, variant not shown              
BF841131 head_neck Gene AVIL, variant not shown              
BG996992 head_neck Gene AVIL, variant not shown              
DB299287 cerebellum Gene AVIL, variant not shown              
DA103036 cerebellum Gene AVIL, variant not shown       capped      
BX647344 Liver Gene AVIL, variant not shown       available from DKFZ, AAA This clone was ignored    
AV722292 hypothalamus Gene AVIL, variant not shown              
N51826 multiple sclerosis lesions Gene AVIL, variant not shown              
N54096 multiple sclerosis lesions Gene AVIL, variant not shown              
AA075576   Gene AVIL, variant not shown       fully sequenced,      
AA075612   Gene AVIL, variant not shown       fully sequenced,      
AA134459 colon, tumor Gene AVIL, variant not shown              
AI733862 colon, tumor Gene AVIL, variant not shown              
AA665244 alveolar rhabdomyosarcoma Gene AVIL, variant not shown       AAA      
AW071709 anaplastic oligodendroglioma, brain Gene AVIL, variant not shown              
BE677150 dorsal root ganglia Gene AVIL, variant not shown              
CK820479 insulinoma, Pancreas Gene AVIL, variant not shown              
BM510486 insulinoma, Pancreas Gene AVIL, variant not shown       AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base)    
BM511317 insulinoma, Pancreas Gene AVIL, variant not shown         Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base)    
BU070999 insulinoma, Pancreas Gene AVIL, variant not shown              
BU073013 insulinoma, Pancreas Gene AVIL, variant not shown              
AV749174 Pituitary Gene AVIL, variant not shown              
AV747501 Pituitary Gene AVIL, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f-u, .g, .h, .i-u, .j-u, .k, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI