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Gene ATXN3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
697 supporting clones for gene ATXN3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
GQ176512   .a 1 to 1005 3 to 1028   tiling clone,   1028/1028
(100 %)
12 diff
(98.9 %id)
GQ176660   .a 82 to 1005 1 to 960   tiling clone,   957/960
(99 %)
14 diff
(98.6 %id)
CT002681 T-Lymphocytes .a 868 to 1776 1 to 937   tiling clone,   937/937
(100 %)
15 diff
(98.4 %id)
AI090577 heart .a 1611 to 1794 184 to 1   tiling clone,   184/190
(96 %)
2 diff
(99.0 %id)
U64821   .b 1 to 1180 1 to 1180 A252T tiling clone, AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 1180/1180
(100 %)
2 diff
(99.9 %id)
T61453 lung .b 776 to 1182 473 to 1       446/473
(94 %)
17 diff
(96.5 %id)
CX163819 human embryonic stem cells differentiated toan early endodermal cell type .b 982 to 1652 1 to 672   tiling clone,   672/672
(100 %)
19 diff
(97.2 %id)
FN109368 breast carcinoma .b 1010 to 1085 1 to 77       77/81
(95 %)
2 diff
(97.6 %id)
BF904937 marrow .b 1472 to 1831 1 to 360   tiling clone,   360/360
(100 %)
13 diff
(96.4 %id)
AW817173 stomach .b 1639 to 1946 321 to 14       308/321
(95 %)
0 diff
(100 %id)
AW817241 stomach .b 1639 to 1942 304 to 1       304/304
(100 %)
0 diff
(100 %id)
AW846617 colon .b 1641 to 2080 462 to 25       438/462
(94 %)
0 diff
(100 %id)
AW846618 colon .b 1641 to 2074 1 to 433       433/433
(100 %)
4 diff
(99.1 %id)
DN913505   .b 1728 to 2220 493 to 1   tiling clone,   493/493
(100 %)
0 diff
(100 %id)
DN913506   .b 1743 to 2177 17 to 451       435/451
(96 %)
6 diff
(98.7 %id)
DN920036   .b 1750 to 2125 1 to 376       376/376
(100 %)
7 diff
(98.2 %id)
FN075896 breast carcinoma .b 1756 to 1846 1 to 90       90/90
(100 %)
1 diff
(98.9 %id)
NM_004993.5   .c 1 to 6922 2 to 6923 exact RefSeq,   6923/6923
(100 %)
0 diff
(100 %id)
U64820   .c 11 to 1888 1 to 1877 A252T tiling clone, AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 1877/1877
(100 %)
2 diff
(99.9 %id)
BC095402 Placenta, normal .c 40 to 4721 1 to 4710 G306Q D307Q L308Q S309Q G310Q ... AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 4710/4712
(99 %)
16 diff
(99.7 %id)
GQ176433   .c 47 to 1056 1 to 1034       1034/1034
(100 %)
12 diff
(98.9 %id)
GQ176434   .c 47 to 1056 1 to 1036       1036/1036
(100 %)
21 diff
(98.0 %id)
GQ176435   .c 47 to 1056 1 to 1034       1034/1034
(100 %)
9 diff
(99.2 %id)
GQ176448   .c 47 to 1056 1 to 1046       1046/1046
(100 %)
22 diff
(97.9 %id)
GQ176454   .c 47 to 1056 1 to 1037       1037/1037
(100 %)
11 diff
(99.0 %id)
GQ176462   .c 47 to 1056 1 to 1037       1037/1037
(100 %)
9 diff
(99.2 %id)
GQ176488   .c 47 to 1056 1 to 1037       1037/1037
(100 %)
13 diff
(98.8 %id)
GQ176499   .c 47 to 1056 1 to 1046       1046/1046
(100 %)
15 diff
(98.6 %id)
GQ176504   .c 47 to 1056 1 to 1049       1049/1049
(100 %)
19 diff
(98.2 %id)
GQ176508   .c 47 to 1056 1 to 1049       1049/1049
(100 %)
21 diff
(98.0 %id)
GQ176510   .c 47 to 1056 1 to 1031       1031/1031
(100 %)
13 diff
(98.8 %id)
GQ176516   .c 47 to 1056 1 to 1031       1031/1031
(100 %)
12 diff
(98.9 %id)
GQ176523   .c 47 to 1056 1 to 1031       1031/1031
(100 %)
14 diff
(98.7 %id)
GQ176533   .c 47 to 1056 1 to 1037       1037/1037
(100 %)
12 diff
(98.9 %id)
GQ176548   .c 47 to 1056 1 to 1040       1040/1040
(100 %)
12 diff
(98.9 %id)
GQ176551   .c 47 to 1056 1 to 1035       1035/1035
(100 %)
13 diff
(98.8 %id)
GQ176552   .c 47 to 1056 1 to 1033       1033/1033
(100 %)
13 diff
(98.8 %id)
GQ176560   .c 47 to 1031 1 to 1012       1012/1012
(100 %)
12 diff
(98.9 %id)
GQ176563   .c 47 to 1056 1 to 1037       1037/1037
(100 %)
7 diff
(99.4 %id)
GQ176564   .c 47 to 1056 1 to 1031       976/1031
(94 %)
21 diff
(98.0 %id)
GQ176568   .c 47 to 1056 1 to 1049       1049/1049
(100 %)
20 diff
(98.1 %id)
GQ176578   .c 47 to 1056 1 to 1049       1049/1049
(100 %)
13 diff
(98.8 %id)
GQ176589   .c 47 to 1056 1 to 1034       1034/1034
(100 %)
14 diff
(98.7 %id)
GQ176594   .c 47 to 1056 1 to 1028       1028/1028
(100 %)
10 diff
(99.1 %id)
GQ176597   .c 47 to 1056 1 to 1031       1031/1031
(100 %)
15 diff
(98.6 %id)
GQ176612   .c 47 to 1056 1 to 1028       1028/1028
(100 %)
19 diff
(98.2 %id)
GQ176621   .c 47 to 1056 1 to 1028       1028/1028
(100 %)
19 diff
(98.2 %id)
GQ176632   .c 47 to 1056 1 to 1010       1010/1010
(100 %)
3 diff
(99.8 %id)
GQ176640   .c 47 to 1056 1 to 1025       1022/1025
(99 %)
15 diff
(98.6 %id)
GQ176642   .c 47 to 1056 1 to 1028       1028/1028
(100 %)
12 diff
(98.9 %id)
GQ176645   .c 47 to 1038 1 to 1007       1007/1007
(100 %)
18 diff
(98.3 %id)
GQ176646   .c 47 to 1056 1 to 1028       1028/1028
(100 %)
14 diff
(98.7 %id)
GQ176658   .c 47 to 1056 1 to 1046       1046/1046
(100 %)
19 diff
(98.2 %id)
GQ176668   .c 47 to 1056 1 to 1046       1050/1046
(100 %)
21 diff
(98.0 %id)
GQ176674   .c 47 to 1056 1 to 1049       1049/1049
(100 %)
16 diff
(98.5 %id)
GQ176677   .c 47 to 1056 1 to 1049       1049/1049
(100 %)
18 diff
(98.3 %id)
GQ176680   .c 47 to 1056 1 to 1010       1010/1010
(100 %)
3 diff
(99.8 %id)
GQ176684   .c 47 to 1056 1 to 1009       1009/1009
(100 %)
3 diff
(99.8 %id)
GQ176685   .c 47 to 1056 1 to 1009       1009/1009
(100 %)
5 diff
(99.6 %id)
GQ176687   .c 47 to 1056 1 to 1010       1010/1010
(100 %)
4 diff
(99.7 %id)
GQ176692   .c 47 to 1056 1 to 1010       1010/1010
(100 %)
5 diff
(99.6 %id)
GQ176697   .c 47 to 1056 1 to 1043       1043/1043
(100 %)
11 diff
(99.0 %id)
GQ176703   .c 47 to 1056 1 to 1040       1040/1040
(100 %)
11 diff
(99.0 %id)
GQ176714   .c 47 to 1056 1 to 1010       1010/1010
(100 %)
5 diff
(99.6 %id)
GQ176719   .c 47 to 983 1 to 985       985/1181
(83 %)
17 diff
(98.6 %id)
GQ176721   .c 47 to 989 1 to 943       943/943
(100 %)
1 diff
(99.9 %id)
GQ176725   .c 47 to 1056 1 to 1010       1010/1010
(100 %)
1 diff
(100.0 %id)
GQ176735   .c 47 to 1056 1 to 1055       1055/1055
(100 %)
20 diff
(98.2 %id)
GQ176737   .c 47 to 1056 1 to 1052       1052/1052
(100 %)
18 diff
(98.3 %id)
GQ176746   .c 47 to 1056 1 to 1010       1010/1010
(100 %)
8 diff
(99.3 %id)
GQ176749   .c 47 to 1056 1 to 1010       1010/1010
(100 %)
2 diff
(99.9 %id)
GQ176756   .c 47 to 1056 1 to 1037       1037/1037
(100 %)
11 diff
(99.0 %id)
GQ176759   .c 47 to 1056 1 to 1034       1034/1034
(100 %)
13 diff
(98.8 %id)
GQ176763   .c 47 to 1056 1 to 1037       1037/1037
(100 %)
11 diff
(99.0 %id)
GQ176766   .c 47 to 1056 1 to 1037       1037/1037
(100 %)
9 diff
(99.2 %id)
GQ176771   .c 47 to 983 1 to 955       955/1020
(93 %)
17 diff
(98.4 %id)
GQ176776   .c 47 to 983 1 to 949       949/1161
(81 %)
17 diff
(98.6 %id)
GQ176791   .c 47 to 1056 1 to 1031       1028/1031
(99 %)
16 diff
(98.5 %id)
GQ176820   .c 47 to 983 1 to 955       955/975
(97 %)
16 diff
(98.4 %id)
GQ176824   .c 47 to 1056 1 to 1031       1028/1031
(99 %)
15 diff
(98.6 %id)
GQ176827   .c 47 to 1056 1 to 1031       1028/1031
(99 %)
19 diff
(98.2 %id)
GQ176838   .c 47 to 1056 1 to 1031       1031/1031
(100 %)
14 diff
(98.7 %id)
GQ176841   .c 47 to 1056 1 to 1028       1028/1028
(100 %)
13 diff
(98.8 %id)
GQ176846   .c 47 to 1056 1 to 1031       1031/1031
(100 %)
11 diff
(99.0 %id)
AK314919 corpus callosum .c 48 to 1154 1 to 1134 G306Q D307Q L308Q S309Q G310Q ...     1134/1134
(100 %)
8 diff
(99.3 %id)
GQ176550   .c 48 to 1056 1 to 1010       1010/1010
(100 %)
10 diff
(99.1 %id)
GQ176806   .c 48 to 1056 1 to 1018       1018/1018
(100 %)
15 diff
(98.6 %id)
GQ176644   .c 52 to 1056 1 to 1023       1023/1023
(100 %)
13 diff
(98.8 %id)
TI_1948092572   .c 61 to 625 123 to 687   fully sequenced,   565/687
(82 %)
7 diff
(99.0 %id)
TI_1948092723   .c 61 to 574 179 to 692   fully sequenced,   514/640
(80 %)
7 diff
(99.0 %id)
BC033711 Breast, mammary adenocarcinoma. .c 68 to 1387 12 to 1358 G306Q D307Q L308Q S309Q G310Q ... available from MGC, AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 1347/1347
(100 %)
8 diff
(99.5 %id)
TI_1948092878   .c 68 to 676 126 to 734       609/1290
(47 %)
11 diff
(99.2 %id)
GQ176805   .c 71 to 1056 1 to 1013       1013/1013
(100 %)
10 diff
(99.1 %id)
U64822   .c 72 to 1383 1 to 1351   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 1351/1351
(100 %)
11 diff
(99.2 %id)
CR602562 placenta .c 93 to 1892 1 to 1800   tiling clone,   1800/1800
(100 %)
0 diff
(100 %id)
BX439196 placenta .c 93 to 1200 1 to 1102       1102/1102
(100 %)
10 diff
(99.1 %id)
GQ176540   .c 159 to 1056 1 to 925       925/925
(100 %)
14 diff
(98.5 %id)
TI_1948092724   .c 513 to 1161 795 to 120   fully sequenced,   676/795
(85 %)
11 diff
(98.7 %id)
TI_1948092573   .c 595 to 1161 713 to 120   fully sequenced,   594/713
(83 %)
12 diff
(98.4 %id)
TI_1948092879   .c 675 to 1150 632 to 129       504/1355
(37 %)
12 diff
(99.2 %id)
DA412130 thalamus .c 1421 to 1980 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
BP389850 pancreatic islet .c 1424 to 1887 1 to 464     Submitted on the opposite strand 464/464
(100 %)
1 diff
(99.8 %id)
AA768286 germinal center B cell .c 1487 to 1888 432 to 31   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 402/402
(100 %)
0 diff
(100 %id)
AI292001 carcinoid, lung .c 1505 to 1888 410 to 27   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 384/384
(100 %)
0 diff
(100 %id)
AA907480 colon, colon tumor .c 1523 to 1888 366 to 1       366/366
(100 %)
0 diff
(100 %id)
AA642481 germinal center B cell .c 1595 to 1785 191 to 1       191/191
(100 %)
0 diff
(100 %id)
BX476929   .c 1626 to 2275 1 to 650   tiling clone,   650/650
(100 %)
2 diff
(99.7 %id)
AW193582 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 1672 to 1892 225 to 5       221/225
(98 %)
0 diff
(100 %id)
AI269566 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 1679 to 1888 250 to 41   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 210/210
(100 %)
14 diff
(93.4 %id)
FN055653 breast carcinoma .c 1763 to 1838 74 to 1     Submitted on the opposite strand 74/74
(100 %)
2 diff
(97.3 %id)
D20589   .c 1808 to 1891 1 to 84     Submitted on the opposite strand 84/84
(100 %)
0 diff
(100 %id)
CX164855 human embryonic stem cells differentiated toan early endodermal cell type .c 2346 to 3083 8 to 745   tiling clone,   738/745
(99 %)
6 diff
(99.2 %id)
DB507012 testis .c 2611 to 3085 1 to 472     Submitted on the opposite strand 472/472
(100 %)
7 diff
(98.6 %id)
CF134530 CNCAP(3)T-225 cell line, Prostate .c 2901 to 3288 8 to 395       388/395
(98 %)
8 diff
(98.0 %id)
TI_154162535   .c 2901 to 3479 79 to 663       585/1179
(49 %)
19 diff
(98.4 %id)
CN369411 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 3047 to 3546 9 to 507   tiling clone,   499/507
(98 %)
6 diff
(98.9 %id)
BF215616 brain, glioblastoma .c 3112 to 3667 1 to 550   tiling clone,   550/873
(63 %)
16 diff
(98.2 %id)
AI733912   .c 3510 to 3912 9 to 411   tiling clone,   403/411
(98 %)
6 diff
(98.6 %id)
AA164664   .c 3511 to 3748 1 to 239       239/239
(100 %)
5 diff
(98.0 %id)
BF529626 anaplastic oligodendroglioma with 1p/19qloss, brain .c 3519 to 4223 1 to 695       695/985
(70 %)
24 diff
(97.6 %id)
CN401993 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 3540 to 4225 1 to 686   tiling clone,   686/686
(100 %)
4 diff
(99.5 %id)
AV710381 adrenal cortico adenoma for Cushing'ssyndrome .c 3962 to 4357 1 to 395       395/395
(100 %)
1 diff
(99.8 %id)
AW001014 Kidney .c 4095 to 4388 297 to 4   tiling clone,   294/297
(98 %)
0 diff
(100 %id)
T47185 ovary .c 4284 to 4538 1 to 261       261/261
(100 %)
13 diff
(95.1 %id)
AA164665   .c 4309 to 4727 420 to 1       420/420
(100 %)
8 diff
(98.1 %id)
AI821319 ovary .c 4315 to 4723 409 to 1   tiling clone,   409/409
(100 %)
5 diff
(98.8 %id)
AI821031 ovary .c 4316 to 4697 1 to 382       382/382
(100 %)
2 diff
(99.5 %id)
AW083849 esophagus, squamous cell carcinoma .c 4317 to 4734 419 to 1   tiling clone,   419/419
(100 %)
13 diff
(96.9 %id)
AI732622   .c 4318 to 4727 411 to 1   tiling clone,   411/413
(99 %)
4 diff
(99.1 %id)
AA971389 carcinoid, lung .c 4733 to 5191 458 to 1   tiling clone,   458/458
(100 %)
7 diff
(98.5 %id)
AW167081 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 4761 to 5193 433 to 1   tiling clone,   433/433
(100 %)
3 diff
(99.4 %id)
EL954232 eyeball .c 5941 to 6346 30 to 436   tiling clone,   407/436
(93 %)
6 diff
(98.7 %id)
AV730771 hypothalamus .c 6143 to 6811 28 to 696   tiling clone,   669/728
(91 %)
24 diff
(96.8 %id)
TI_154025075   .c 6242 to 6921 777 to 99   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 679/799
(84 %)
13 diff
(98.4 %id)
FN104195 breast carcinoma .c 6244 to 6320 76 to 1     Submitted on the opposite strand 76/77
(98 %)
1 diff
(98.8 %id)
W72774 heart .c 6264 to 6802 1 to 533       533/535
(99 %)
10 diff
(98.2 %id)
BX102064 multiple sclerosis lesions .c 6266 to 6958 1 to 693       693/693
(100 %)
10 diff
(98.6 %id)
TI_149279798   .c 6272 to 6922 108 to 758   AAA Submitted on the opposite strand 651/1154
(56 %)
11 diff
(99.1 %id)
AA076186   .c 6290 to 6649 1 to 360       360/360
(100 %)
1 diff
(99.8 %id)
CA439789 lung, Lung Focal Fibrosis .c 6305 to 6921 634 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 616/616
(100 %)
5 diff
(99.2 %id)
N53622 multiple sclerosis lesions .c 6351 to 6498 1 to 148       148/148
(100 %)
0 diff
(100 %id)
BE217844 carcinoid, lung .c 6408 to 6920 513 to 1       513/513
(100 %)
0 diff
(100 %id)
EL952471 eyeball .c 6427 to 6921 50 to 542   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 493/542
(90 %)
6 diff
(98.9 %id)
AI961188 pooled germ cell tumors .c 6429 to 6920 505 to 13   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 493/493
(100 %)
5 diff
(99.0 %id)
AA985560 carcinoid, lung .c 6462 to 6920 459 to 1       459/459
(100 %)
0 diff
(100 %id)
BE327404 carcinoid, lung .c 6528 to 6917 393 to 4       390/393
(99 %)
0 diff
(100 %id)
AW991239   .c 6530 to 6726 197 to 1     Submitted on the opposite strand 197/197
(100 %)
0 diff
(100 %id)
AI269056 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 6548 to 6920 388 to 16   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 373/373
(100 %)
1 diff
(99.8 %id)
AW970490   .c 6596 to 6921 35 to 360   tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 326/360
(90 %)
6 diff
(98.4 %id)
N51479 multiple sclerosis lesions .c 6629 to 7105 483 to 1   tiling clone,   483/484
(99 %)
8 diff
(98.4 %id)
AA541279 colon .c 6629 to 6921 293 to 1       293/293
(100 %)
0 diff
(100 %id)
N46999 multiple sclerosis lesions .c 6676 to 7106 433 to 1   tiling clone,   433/433
(100 %)
4 diff
(99.1 %id)
NM_001127696.1   .d 1 to 6877 2 to 6878 exact RefSeq,   6878/6878
(100 %)
0 diff
(100 %id)
BU190081 eye, retinoblastoma .d 21 to 931 1 to 911   tiling clone,   911/911
(100 %)
2 diff
(99.8 %id)
GQ176486   .d 47 to 1011 1 to 992       992/992
(100 %)
11 diff
(98.9 %id)
GQ176489   .d 47 to 1011 1 to 989       989/989
(100 %)
10 diff
(99.0 %id)
GQ176744   .d 47 to 1011 1 to 965   tiling clone,   965/965
(100 %)
5 diff
(99.5 %id)
BF698895 brain, primitive neuroectoderm .d 65 to 638 1 to 569       569/1117
(50 %)
15 diff
(98.7 %id)
AA232917.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 121 to 448 1 to 328     also hits gene RAB23 328/332
(98 %)
2 diff
(99.4 %id)
DA347629 substantia nigra .e 1 to 572 2 to 573   tiling clone, to resequence, capped   572/572
(100 %)
0 diff
(100 %id)
CN287557 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 74 to 340 1 to 266       266/266
(100 %)
1 diff
(99.7 %id)
DB310281 substantia nigra .e 1254 to 1800 547 to 1   tiling clone, to resequence,   547/547
(100 %)
1 diff
(99.9 %id)
NM_001127697.2   .f 1 to 6769 2 to 6770 exact RefSeq,   6770/6770
(100 %)
0 diff
(100 %id)
GQ176436   .f 47 to 903 1 to 887       887/887
(100 %)
7 diff
(99.3 %id)
GQ176437   .f 47 to 903 1 to 884       884/884
(100 %)
7 diff
(99.3 %id)
GQ176457   .f 47 to 903 1 to 884       884/884
(100 %)
7 diff
(99.3 %id)
GQ176474   .f 47 to 903 1 to 884       884/884
(100 %)
13 diff
(98.6 %id)
GQ176485   .f 47 to 903 1 to 883       883/883
(100 %)
10 diff
(98.9 %id)
GQ176487   .f 47 to 903 1 to 884       884/884
(100 %)
13 diff
(98.6 %id)
GQ176493   .f 47 to 903 1 to 883       883/883
(100 %)
10 diff
(98.9 %id)
GQ176495   .f 47 to 903 1 to 878       878/878
(100 %)
11 diff
(98.8 %id)
GQ176511   .f 47 to 903 1 to 878       875/878
(99 %)
20 diff
(97.8 %id)
GQ176639   .f 47 to 903 1 to 874       875/874
(100 %)
19 diff
(97.9 %id)
GQ176663   .f 47 to 903 1 to 893       894/893
(100 %)
24 diff
(97.4 %id)
GQ176688   .f 47 to 903 1 to 857   tiling clone,   857/857
(100 %)
3 diff
(99.7 %id)
GQ176695   .f 47 to 903 1 to 890       891/890
(100 %)
18 diff
(98.0 %id)
GQ176724   .f 47 to 903 1 to 856   tiling clone,   856/856
(100 %)
2 diff
(99.8 %id)
GQ176757   .f 47 to 903 1 to 884       884/884
(100 %)
9 diff
(99.0 %id)
GQ176772   .f 47 to 903 1 to 881       881/881
(100 %)
8 diff
(99.1 %id)
GQ176773   .f 47 to 903 1 to 881       881/881
(100 %)
12 diff
(98.7 %id)
GQ176781   .f 47 to 903 1 to 884       884/884
(100 %)
10 diff
(98.9 %id)
GQ176782   .f 47 to 903 1 to 884       884/884
(100 %)
9 diff
(99.0 %id)
GQ176790   .f 47 to 902 1 to 878       874/878
(99 %)
21 diff
(97.7 %id)
GQ176812   .f 47 to 903 1 to 884       884/884
(100 %)
8 diff
(99.1 %id)
GQ176815   .f 47 to 902 1 to 884       884/884
(100 %)
11 diff
(98.8 %id)
NM_030660.4   .g 1 to 6757 2 to 6758 exact RefSeq,   6758/6758
(100 %)
0 diff
(100 %id)
AB050194   .g 11 to 1215 1 to 1205 exact tiling clone,   1205/1211
(99 %)
1 diff
(100.0 %id)
GQ176440   .g 47 to 891 1 to 884       855/884
(96 %)
13 diff
(98.6 %id)
GQ176455   .g 47 to 891 1 to 872       872/872
(100 %)
9 diff
(99.0 %id)
GQ176467   .g 47 to 891 1 to 872       872/872
(100 %)
10 diff
(98.9 %id)
GQ176498   .g 47 to 891 1 to 884       855/884
(96 %)
16 diff
(98.2 %id)
GQ176536   .g 47 to 891 1 to 893       893/893
(100 %)
10 diff
(98.9 %id)
GQ176539   .g 47 to 891 1 to 890       890/890
(100 %)
13 diff
(98.6 %id)
GQ176566   .g 47 to 891 1 to 881       855/881
(97 %)
12 diff
(98.7 %id)
GQ176665   .g 47 to 891 1 to 881       855/881
(97 %)
13 diff
(98.6 %id)
GQ176675   .g 47 to 891 1 to 884       855/884
(96 %)
12 diff
(98.7 %id)
GQ176679   .g 47 to 891 1 to 845       845/845
(100 %)
0 diff
(100 %id)
GQ176700   .g 47 to 891 1 to 878       855/878
(97 %)
12 diff
(98.7 %id)
GQ176750   .g 47 to 891 1 to 845       845/845
(100 %)
5 diff
(99.5 %id)
GQ176813   .g 47 to 891 1 to 872       872/872
(100 %)
10 diff
(98.9 %id)
GQ176822   .g 47 to 891 1 to 884       881/884
(99 %)
13 diff
(98.6 %id)
GQ176836   .g 47 to 891 1 to 865       865/865
(100 %)
14 diff
(98.4 %id)
GQ176835   .g 48 to 818 1 to 774       776/805
(96 %)
12 diff
(98.6 %id)
NR_028459.1   .h 1 to 6976 2 to 6977 exact RefSeq, tiling clone,   6977/6977
(100 %)
0 diff
(100 %id)
DA827537 pericardium .h 1 to 534 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
BQ269281 Pancreas, Purified pancreatic islet .h 7 to 561 1 to 554       554/554
(100 %)
3 diff
(99.5 %id)
BX483954   .h 30 to 607 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DA800361 brain .h 32 to 540 2 to 512   capped   511/516
(99 %)
3 diff
(99.5 %id)
BG434106 placenta .h 35 to 785 1 to 746       746/747
(99 %)
18 diff
(97.6 %id)
BM851671 myeloma .h 35 to 468 1 to 434       434/434
(100 %)
15 diff
(96.6 %id)
CD109565 Human Placenta, placenta .h 41 to 791 29 to 780       752/780
(96 %)
10 diff
(98.8 %id)
BU944245 adenocarcinoma, cell line, breast .h 44 to 552 156 to 664       509/810
(62 %)
45 diff
(94.5 %id)
CA395670 eye, RPE/choroid .h 45 to 533 1 to 489       489/489
(100 %)
1 diff
(99.8 %id)
GQ176476   .h 47 to 1110 1 to 1088 F5X K8N Q9K E10K I181V ...     1088/1088
(100 %)
12 diff
(98.9 %id)
GQ176531   .h 47 to 1110 1 to 1091 I92T N95D K166M I240V     1091/1091
(100 %)
14 diff
(98.8 %id)
GQ176532   .h 47 to 1110 1 to 1091 E2X F5X E10Q G11X C14X ...     1091/1091
(100 %)
17 diff
(98.5 %id)
GQ176565   .h 47 to 1110 1 to 1055       1020/1055
(96 %)
14 diff
(98.7 %id)
GQ176567   .h 47 to 1110 1 to 1112 R103G V204A     1112/1112
(100 %)
11 diff
(99.1 %id)
GQ176570   .h 47 to 1110 1 to 1057       1019/1057
(96 %)
12 diff
(98.9 %id)
GQ176577   .h 47 to 1110 1 to 1112 E32K E195X Q198X K200X R203X ...     1071/1112
(96 %)
13 diff
(98.9 %id)
GQ176580   .h 47 to 1110 1 to 1058       1020/1058
(96 %)
13 diff
(98.8 %id)
GQ176609   .h 47 to 994 1 to 948 Q24E M221T L235P G273A D297E ...     948/1247
(76 %)
12 diff
(99.1 %id)
GQ176622   .h 47 to 1110 1 to 1088 exact     1085/1088
(99 %)
16 diff
(98.6 %id)
GQ176628   .h 47 to 1110 1 to 1166       1047/1166
(89 %)
17 diff
(98.6 %id)
GQ176671   .h 47 to 1110 1 to 1184       1020/1184
(86 %)
14 diff
(98.9 %id)
GQ176686   .h 47 to 1110 1 to 1208       1020/1208
(84 %)
24 diff
(98.1 %id)
GQ176693   .h 47 to 1110 1 to 1211       1050/1211
(86 %)
22 diff
(98.2 %id)
GQ176698   .h 47 to 1110 1 to 1166       1047/1166
(89 %)
18 diff
(98.5 %id)
GQ176699   .h 47 to 1110 1 to 1175       1050/1175
(89 %)
18 diff
(98.5 %id)
GQ176701   .h 47 to 1110 1 to 1043       1038/1043
(99 %)
15 diff
(98.6 %id)
GQ176728   .h 47 to 1110 1 to 1064 K8E E109G L177P     1064/1064
(100 %)
6 diff
(99.5 %id)
GQ176741   .h 47 to 1110 1 to 1157       1020/1157
(88 %)
14 diff
(98.8 %id)
GQ176745   .h 47 to 1110 1 to 1184       1020/1184
(86 %)
16 diff
(98.7 %id)
GQ176747   .h 47 to 1110 1 to 1178       1020/1178
(86 %)
19 diff
(98.4 %id)
GQ176762   .h 47 to 1110 1 to 1208       1020/1208
(84 %)
20 diff
(98.4 %id)
GQ176800   .h 47 to 1110 1 to 1172       1047/1172
(89 %)
23 diff
(98.1 %id)
GQ176831   .h 47 to 1103 1 to 1159       1040/1166
(89 %)
15 diff
(98.8 %id)
DA287943 corpus callosum .h 49 to 534 2 to 487   capped   486/486
(100 %)
0 diff
(100 %id)
DB039197 testis .h 49 to 595 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
CK825711 Pancreas, Purified pancreatic islet .h 52 to 623 1 to 572     Submitted on the opposite strand 572/572
(100 %)
0 diff
(100 %id)
DR423238 eye, Pterygium .h 56 to 676 1 to 620       620/627
(98 %)
3 diff
(99.6 %id)
AL709144 human skeletal muscle .h 57 to 567 1 to 511       511/511
(100 %)
0 diff
(100 %id)
DA702792   .h 58 to 562 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
DA754206   .h 58 to 560 2 to 504   capped   503/503
(100 %)
2 diff
(99.7 %id)
DB272942 uterus .h 58 to 559 2 to 504   capped   503/505
(99 %)
2 diff
(99.7 %id)
DA513286 brain .h 60 to 631 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DB260093 uterus .h 60 to 635 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DB064747 testis .h 61 to 581 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DB239465 trachea .h 62 to 644 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
BM848444 myeloma .h 63 to 525 1 to 462       462/462
(100 %)
3 diff
(99.4 %id)
DA255490 caudate nucleus .h 65 to 629 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA028790   .h 66 to 632 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
BG031529 breast, mammary adenocarcinoma, cell line .h 68 to 788 1 to 725       725/964
(75 %)
18 diff
(98.2 %id)
CV030600 mixed .h 69 to 637 1 to 570       570/570
(100 %)
3 diff
(99.5 %id)
CD643024 Embryonic Stem cells .h 69 to 865 8 to 805       798/808
(98 %)
11 diff
(98.7 %id)
CN395583 embryonic stem cells, DMSO-treated H9 cellline .h 74 to 655 1 to 582       582/582
(100 %)
0 diff
(100 %id)
CX759719 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .h 75 to 803 1 to 719     Submitted on the opposite strand 719/816
(88 %)
11 diff
(98.7 %id)
GQ176830   .h 76 to 1110 1 to 1152       991/1152
(86 %)
17 diff
(98.6 %id)
BE866648 bladder, carcinoma, cell line .h 79 to 748 1 to 656       656/656
(100 %)
23 diff
(96.5 %id)
GQ176615   .h 88 to 1110 42 to 1187       979/1187
(82 %)
22 diff
(98.2 %id)
GQ176808   .h 88 to 1096 42 to 1161       995/1161
(85 %)
23 diff
(98.1 %id)
CR999213 T-Lymphocytes .h 90 to 862 1 to 774       774/774
(100 %)
3 diff
(99.7 %id)
GQ176452   .h 93 to 1110 47 to 1049       976/1049
(93 %)
24 diff
(97.8 %id)
CN395584 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 95 to 719 8 to 632       625/632
(98 %)
1 diff
(99.9 %id)
GQ176672   .h 96 to 1110 49 to 1197       997/1197
(83 %)
27 diff
(97.8 %id)
AA746358 germinal center B cell .h 150 to 738 1 to 587       587/587
(100 %)
5 diff
(99.2 %id)
AW957304   .h 154 to 527 14 to 389       376/389
(96 %)
23 diff
(94.1 %id)
CK002042 brain/CNS, Bulk tissue from Human Spinal cord .h 189 to 804 1 to 615       615/615
(100 %)
4 diff
(99.4 %id)
GQ176618   .h 221 to 1110 1 to 1046       927/1046
(88 %)
21 diff
(98.0 %id)
BF916771 uterus_tumor .h 276 to 520 253 to 9     Submitted on the opposite strand 245/253
(96 %)
0 diff
(100 %id)
GQ176599   .i 1 to 994 3 to 999 G139D V212M tiling clone,   999/999
(100 %)
18 diff
(98.2 %id)
GQ176616   .i 1 to 1020 3 to 1031 C18R T269A G273R     1035/1031
(100 %)
19 diff
(98.2 %id)
GQ176619   .i 1 to 1020 3 to 1031 exact tiling clone,   1031/1031
(100 %)
17 diff
(98.4 %id)
GQ176673   .i 1 to 1020 3 to 1058 exact tiling clone,   1034/1058
(97 %)
11 diff
(99.0 %id)
GQ176704   .i 1 to 1020 3 to 1037 D57N S261X N263X Q266X N275X ...     1037/1037
(100 %)
25 diff
(97.6 %id)
GQ176787   .i 1 to 1020 3 to 1034 S66T     1034/1034
(100 %)
24 diff
(97.7 %id)
GQ176829   .i 1 to 1020 3 to 1034 I143M Q238R E239K     1034/1034
(100 %)
30 diff
(97.1 %id)
BG028112 Bone, osteosarcoma, cell line .i 312 to 1024 1 to 720   tiling clone,   721/890
(81 %)
39 diff
(95.7 %id)
NM_001164781.1   .j 1 to 6712 2 to 6713 exact RefSeq,   6713/6713
(100 %)
0 diff
(100 %id)
GQ176526   .j 47 to 846 1 to 818   tiling clone,   818/818
(100 %)
15 diff
(98.2 %id)
GQ176636   .j 85 to 846 69 to 831   tiling clone,   766/831
(92 %)
10 diff
(98.8 %id)
AI953521 Kidney .j 118 to 923 827 to 1   tiling clone,   748/828
(90 %)
38 diff
(95.5 %id)
GQ176792   .k 1 to 852 3 to 893 M46T M48K V160M M216I G254Q ... tiling clone,   864/893
(96 %)
17 diff
(98.1 %id)
GQ176712   .l 1 to 975 3 to 977 Q223* tiling clone,   981/977
(100 %)
16 diff
(98.4 %id)
NR_028453.1   .m 1 to 6836 2 to 6837 exact RefSeq, tiling clone,   6837/6837
(100 %)
0 diff
(100 %id)
BC022245 lung .m 31 to 2598 1 to 2568 exact available from MGC, AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 2568/2568
(100 %)
0 diff
(100 %id)
GQ176441   .m 47 to 970 1 to 960       960/960
(100 %)
13 diff
(98.7 %id)
GQ176458   .m 47 to 970 1 to 942       942/942
(100 %)
15 diff
(98.5 %id)
GQ176464   .m 47 to 970 1 to 951       951/951
(100 %)
8 diff
(99.2 %id)
GQ176477   .m 47 to 970 1 to 948       948/948
(100 %)
12 diff
(98.8 %id)
GQ176479   .m 47 to 970 1 to 951       951/951
(100 %)
11 diff
(98.9 %id)
GQ176481   .m 47 to 970 1 to 948       948/948
(100 %)
10 diff
(99.0 %id)
GQ176483   .m 47 to 970 1 to 948       948/948
(100 %)
9 diff
(99.1 %id)
GQ176492   .m 47 to 970 1 to 951       951/951
(100 %)
10 diff
(99.0 %id)
GQ176507   .m 47 to 970 1 to 959       959/959
(100 %)
16 diff
(98.4 %id)
GQ176513   .m 47 to 970 1 to 945       945/945
(100 %)
14 diff
(98.6 %id)
GQ176524   .m 47 to 970 1 to 945       945/945
(100 %)
12 diff
(98.8 %id)
GQ176537   .m 47 to 970 1 to 966       966/966
(100 %)
13 diff
(98.7 %id)
GQ176546   .m 47 to 970 1 to 948       948/948
(100 %)
12 diff
(98.8 %id)
GQ176569   .m 47 to 970 1 to 960       960/960
(100 %)
12 diff
(98.8 %id)
GQ176586   .m 47 to 970 1 to 945       945/945
(100 %)
13 diff
(98.7 %id)
GQ176588   .m 47 to 970 1 to 945       945/945
(100 %)
11 diff
(98.9 %id)
GQ176596   .m 47 to 970 1 to 945       945/945
(100 %)
12 diff
(98.8 %id)
GQ176600   .m 47 to 970 1 to 945       945/945
(100 %)
15 diff
(98.5 %id)
GQ176605   .m 47 to 970 1 to 945       945/945
(100 %)
13 diff
(98.7 %id)
GQ176607   .m 47 to 970 1 to 945       945/945
(100 %)
13 diff
(98.7 %id)
GQ176610   .m 47 to 970 1 to 948       948/948
(100 %)
12 diff
(98.8 %id)
GQ176611   .m 47 to 970 1 to 945       945/945
(100 %)
11 diff
(98.9 %id)
GQ176617   .m 47 to 970 1 to 942       942/942
(100 %)
20 diff
(97.9 %id)
GQ176620   .m 47 to 970 1 to 945       945/945
(100 %)
11 diff
(98.9 %id)
GQ176630   .m 47 to 970 1 to 924       924/924
(100 %)
0 diff
(100 %id)
GQ176649   .m 47 to 970 1 to 942       942/942
(100 %)
12 diff
(98.8 %id)
GQ176662   .m 47 to 970 1 to 954       954/954
(100 %)
12 diff
(98.8 %id)
GQ176664   .m 47 to 970 1 to 963       963/963
(100 %)
8 diff
(99.2 %id)
GQ176678   .m 47 to 970 1 to 963       963/963
(100 %)
10 diff
(99.0 %id)
GQ176682   .m 47 to 970 1 to 924       924/924
(100 %)
1 diff
(99.9 %id)
GQ176690   .m 47 to 970 1 to 921       921/921
(100 %)
2 diff
(99.8 %id)
GQ176696   .m 47 to 970 1 to 957       957/957
(100 %)
10 diff
(99.0 %id)
GQ176706   .m 47 to 970 1 to 933       933/933
(100 %)
19 diff
(98.0 %id)
GQ176722   .m 47 to 970 1 to 924       924/924
(100 %)
3 diff
(99.7 %id)
GQ176738   .m 47 to 970 1 to 963       963/963
(100 %)
11 diff
(98.9 %id)
GQ176755   .m 47 to 970 1 to 924       924/924
(100 %)
3 diff
(99.7 %id)
GQ176760   .m 47 to 970 1 to 951       951/951
(100 %)
10 diff
(99.0 %id)
GQ176767   .m 47 to 970 1 to 951       951/951
(100 %)
10 diff
(99.0 %id)
GQ176796   .m 47 to 897 1 to 896       896/1034
(86 %)
17 diff
(98.4 %id)
GQ176797   .m 47 to 970 1 to 963       963/963
(100 %)
15 diff
(98.5 %id)
GQ176801   .m 47 to 897 1 to 895       895/1088
(82 %)
16 diff
(98.6 %id)
GQ176803   .m 47 to 897 1 to 896       896/1098
(81 %)
16 diff
(98.6 %id)
GQ176807   .m 47 to 970 1 to 948       948/948
(100 %)
10 diff
(99.0 %id)
GQ176819   .m 47 to 970 1 to 951       951/951
(100 %)
12 diff
(98.8 %id)
GQ176845   .m 47 to 970 1 to 938       938/938
(100 %)
14 diff
(98.6 %id)
GQ176810   .m 49 to 970 1 to 949       949/949
(100 %)
13 diff
(98.7 %id)
BM541541 leiomyosarcoma, uterus .m 76 to 974 1 to 926       926/1092
(84 %)
11 diff
(99.0 %id)
GQ176490   .m 80 to 970 1 to 916       916/916
(100 %)
12 diff
(98.7 %id)
GQ176659   .m 88 to 897 42 to 896       857/1089
(78 %)
17 diff
(98.5 %id)
NR_028454.1   .n 1 to 6671 2 to 6672 exact RefSeq, tiling clone,   6672/6672
(100 %)
0 diff
(100 %id)
GQ176456   .n 47 to 805 1 to 786       786/786
(100 %)
11 diff
(98.7 %id)
GQ176475   .n 47 to 805 1 to 786       786/786
(100 %)
12 diff
(98.5 %id)
GQ176496   .n 47 to 805 1 to 786       786/786
(100 %)
10 diff
(98.8 %id)
GQ176503   .n 47 to 805 1 to 800       800/800
(100 %)
11 diff
(98.7 %id)
GQ176521   .n 47 to 805 1 to 780       780/780
(100 %)
10 diff
(98.8 %id)
GQ176535   .n 47 to 805 1 to 807       807/807
(100 %)
12 diff
(98.6 %id)
GQ176543   .n 47 to 805 1 to 759       759/759
(100 %)
6 diff
(99.3 %id)
GQ176544   .n 47 to 792 1 to 779       776/779
(99 %)
12 diff
(98.5 %id)
GQ176547   .n 47 to 805 1 to 786       786/786
(100 %)
12 diff
(98.5 %id)
GQ176549   .n 47 to 805 1 to 798       795/798
(99 %)
11 diff
(98.7 %id)
GQ176554   .n 47 to 805 1 to 785       785/785
(100 %)
10 diff
(98.8 %id)
GQ176556   .n 47 to 805 1 to 783       783/783
(100 %)
10 diff
(98.8 %id)
GQ176559   .n 47 to 805 1 to 786       786/786
(100 %)
11 diff
(98.7 %id)
GQ176585   .n 47 to 805 1 to 779       779/779
(100 %)
14 diff
(98.3 %id)
GQ176587   .n 47 to 805 1 to 783       783/783
(100 %)
10 diff
(98.8 %id)
GQ176591   .n 47 to 805 1 to 780       780/780
(100 %)
11 diff
(98.6 %id)
GQ176598   .n 47 to 805 1 to 780       780/780
(100 %)
13 diff
(98.4 %id)
GQ176601   .n 47 to 805 1 to 780       780/780
(100 %)
12 diff
(98.5 %id)
GQ176604   .n 47 to 805 1 to 765       765/765
(100 %)
8 diff
(99.0 %id)
GQ176623   .n 47 to 805 1 to 783       783/783
(100 %)
13 diff
(98.4 %id)
GQ176626   .n 47 to 805 1 to 783       783/783
(100 %)
11 diff
(98.6 %id)
GQ176637   .n 47 to 805 1 to 774       774/774
(100 %)
12 diff
(98.5 %id)
GQ176638   .n 47 to 805 1 to 777       777/777
(100 %)
14 diff
(98.2 %id)
GQ176657   .n 47 to 805 1 to 795       795/795
(100 %)
11 diff
(98.7 %id)
GQ176676   .n 47 to 805 1 to 765       765/765
(100 %)
6 diff
(99.3 %id)
GQ176691   .n 47 to 805 1 to 759       759/759
(100 %)
1 diff
(99.9 %id)
GQ176716   .n 47 to 805 1 to 759       759/759
(100 %)
3 diff
(99.7 %id)
GQ176720   .n 47 to 805 1 to 759       759/759
(100 %)
3 diff
(99.7 %id)
GQ176726   .n 47 to 805 1 to 759       759/759
(100 %)
0 diff
(100 %id)
GQ176731   .n 47 to 805 1 to 801       801/801
(100 %)
14 diff
(98.3 %id)
GQ176743   .n 47 to 805 1 to 759       759/759
(100 %)
1 diff
(99.9 %id)
GQ176748   .n 47 to 805 1 to 759       759/759
(100 %)
4 diff
(99.5 %id)
GQ176758   .n 47 to 805 1 to 786       786/786
(100 %)
9 diff
(98.9 %id)
GQ176765   .n 47 to 803 1 to 778       778/778
(100 %)
8 diff
(99.0 %id)
GQ176774   .n 47 to 805 1 to 785       785/785
(100 %)
10 diff
(98.8 %id)
GQ176780   .n 47 to 805 1 to 786       786/786
(100 %)
8 diff
(99.0 %id)
GQ176788   .n 47 to 805 1 to 780       780/780
(100 %)
13 diff
(98.4 %id)
GQ176795   .n 47 to 805 1 to 813       810/813
(99 %)
13 diff
(98.5 %id)
GQ176821   .n 47 to 805 1 to 782       782/782
(100 %)
8 diff
(99.0 %id)
GQ176828   .n 47 to 805 1 to 783       783/783
(100 %)
11 diff
(98.6 %id)
GQ176832   .n 47 to 805 1 to 783       783/783
(100 %)
10 diff
(98.8 %id)
GQ176840   .n 47 to 805 1 to 780       780/780
(100 %)
11 diff
(98.6 %id)
GQ176843   .n 47 to 805 1 to 779       779/779
(100 %)
13 diff
(98.4 %id)
GQ176641   .n 76 to 732 1 to 714       714/877
(81 %)
9 diff
(99.0 %id)
CN395585 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .n 186 to 756 7 to 604       598/604
(99 %)
13 diff
(97.9 %id)
TI_1948092443   .n 203 to 910 860 to 121       740/1409
(52 %)
24 diff
(98.3 %id)
BE537913 cervix .n 216 to 938 1 to 728       728/948
(76 %)
37 diff
(96.1 %id)
BM713352 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .n 282 to 806 1 to 525       525/525
(100 %)
3 diff
(99.5 %id)
GQ176670   .o 1 to 810 3 to 848 Y27F G240Q D241R L242Q S243Q ... tiling clone,   822/848
(96 %)
15 diff
(98.3 %id)
GQ176769   .o 1 to 810 3 to 839 G73D G240Q D241Q L242Q S243Q ... tiling clone,   839/839
(100 %)
10 diff
(98.9 %id)
BU663113 blood .o 1 to 636 2 to 637   tiling clone,   637/637
(100 %)
0 diff
(100 %id)
NR_028464.1   .p 1 to 6823 2 to 6824 exact RefSeq, tiling clone,   6824/6824
(100 %)
0 diff
(100 %id)
GQ176469   .p 47 to 957 1 to 938 exact     942/938
(100 %)
14 diff
(98.6 %id)
GQ176779   .p 47 to 937 1 to 918 N240D E244Q     918/918
(100 %)
13 diff
(98.6 %id)
GQ176608   .q 1 to 867 3 to 881 E7K     881/881
(100 %)
23 diff
(97.4 %id)
GQ176631   .q 1 to 867 3 to 870 S35P E195G D197G tiling clone,   870/870
(100 %)
5 diff
(99.5 %id)
GQ176734   .q 1 to 848 3 to 1006 I4V H6D M46V L126H tiling clone,   878/1006
(87 %)
23 diff
(97.8 %id)
GQ176784   .q 1 to 867 3 to 881 Q64R M135L M191V tiling clone,   881/881
(100 %)
26 diff
(97.1 %id)
GQ176786   .q 1 to 867 3 to 881 T220A tiling clone,   881/881
(100 %)
22 diff
(97.6 %id)
GQ176789   .q 1 to 866 3 to 879 N21S R47G L97P D117G L178S ...     876/879
(99 %)
28 diff
(96.9 %id)
GQ176793   .q 1 to 867 3 to 890 M48K N81D V161M S214P     867/890
(97 %)
17 diff
(98.1 %id)
GQ176802   .q 1 to 867 3 to 1019 C18Y V161M     897/1019
(88 %)
18 diff
(98.3 %id)
NM_001164779.1   .r 1 to 6559 2 to 6560 exact RefSeq,   6560/6560
(100 %)
0 diff
(100 %id)
GQ176459   .r 47 to 693 1 to 671       671/671
(100 %)
8 diff
(98.9 %id)
GQ176542   .r 47 to 693 1 to 646       646/646
(100 %)
1 diff
(99.9 %id)
GQ176545   .r 47 to 693 1 to 647       647/647
(100 %)
2 diff
(99.7 %id)
GQ176625   .r 47 to 620 1 to 619       620/798
(77 %)
21 diff
(97.4 %id)
GQ176627   .r 47 to 693 1 to 647   tiling clone,   647/647
(100 %)
0 diff
(100 %id)
GQ176633   .r 47 to 693 1 to 647       647/647
(100 %)
2 diff
(99.7 %id)
GQ176705   .r 47 to 693 1 to 659       659/659
(100 %)
11 diff
(98.4 %id)
GQ176710   .r 47 to 693 1 to 659       659/659
(100 %)
12 diff
(98.2 %id)
GQ176727   .r 47 to 693 1 to 647       647/647
(100 %)
2 diff
(99.7 %id)
GQ176804   .r 47 to 685 1 to 675       674/675
(99 %)
18 diff
(97.4 %id)
GQ176817   .r 47 to 693 1 to 673       673/673
(100 %)
14 diff
(98.0 %id)
GQ176573   .s 1 to 855 3 to 890 D113V Q203X tiling clone,   887/890
(99 %)
22 diff
(97.6 %id)
GQ176592   .s 1 to 855 3 to 859 Q45R S80L L81S L82* tiling clone,   859/859
(100 %)
17 diff
(98.1 %id)
NR_028466.1   .t 1 to 6471 2 to 6472 exact RefSeq, tiling clone,   6472/6472
(100 %)
0 diff
(100 %id)
GQ176517   .t 47 to 605 1 to 595       569/595
(95 %)
12 diff
(98.0 %id)
GQ176518   .t 47 to 605 1 to 598       569/598
(95 %)
12 diff
(98.0 %id)
GQ176709   .u 1 to 919 3 to 1119 Q78R V114M G208Q D209Q L210Q ... tiling clone,   931/1119
(83 %)
15 diff
(98.7 %id)
GQ176446   .va 1 to 754 3 to 789 V114M Q160R G208Q D209Q L210Q ... tiling clone,   789/789
(100 %)
11 diff
(98.7 %id)
GQ176707   .va 1 to 754 3 to 957 T2A V114M R133G R187Q F191L ...     796/957
(83 %)
21 diff
(97.9 %id)
GQ176847   .va 1 to 754 3 to 777 E75G V114M G122R K197E G208H ... tiling clone,   777/777
(100 %)
13 diff
(98.4 %id)
GQ176761   .vb 1 to 690 3 to 719 G200Q D201Q L202Q S203Q G204Q ... tiling clone,   719/719
(100 %)
9 diff
(98.8 %id)
GQ176777   .vb 1 to 617 3 to 655   tiling clone,   655/881
(74 %)
9 diff
(99.0 %id)
GQ176785   .vb 1 to 690 3 to 716 G200Q D201Q L202Q S203Q G204Q ...     716/716
(100 %)
10 diff
(98.7 %id)
GQ176799   .vb 1 to 617 3 to 655       655/857
(76 %)
11 diff
(98.8 %id)
GQ176768   .vc 1 to 702 3 to 725 Q86R R189S G190S T191S Y192S ... tiling clone,   725/725
(100 %)
9 diff
(98.8 %id)
GQ176602   .vd 1 to 1081 3 to 1103 V120M D149N L163P tiling clone,   1103/1103
(100 %)
22 diff
(98.1 %id)
NR_028456.1   .ve 1 to 6725 2 to 6726 exact RefSeq, tiling clone,   6726/6726
(100 %)
0 diff
(100 %id)
GQ176445   .ve 47 to 859 1 to 852 K30N V114M     823/852
(96 %)
15 diff
(98.3 %id)
GQ176466   .ve 47 to 859 1 to 841 exact     841/841
(100 %)
10 diff
(98.9 %id)
GQ176515   .ve 47 to 859 1 to 829 S6L L7Y F8S R9E N10M ...     829/829
(100 %)
20 diff
(97.6 %id)
GQ176522   .ve 47 to 859 1 to 834 D70G V114M D143G     834/834
(100 %)
12 diff
(98.6 %id)
GQ176525   .ve 47 to 859 1 to 852 T24A L28S N165D     823/852
(96 %)
15 diff
(98.3 %id)
GQ176603   .ve 47 to 859 1 to 834 V114M S138G     834/834
(100 %)
11 diff
(98.7 %id)
GQ176438   .vf 1 to 972 3 to 1001 F8S tiling clone,   1001/1001
(100 %)
9 diff
(99.2 %id)
NR_028455.1   .vg 1 to 6890 2 to 6891 exact RefSeq, tiling clone,   6891/6891
(100 %)
0 diff
(100 %id)
GQ176443   .vg 47 to 951 1 to 905 L35S V114M     905/952
(95 %)
6 diff
(99.4 %id)
GQ176463   .vg 47 to 1024 1 to 1005 G120D I155V E197D     1002/1005
(99 %)
25 diff
(97.6 %id)
GQ176484   .vg 47 to 1024 1 to 1005 N195S     1005/1005
(100 %)
12 diff
(98.9 %id)
GQ176497   .vg 47 to 1024 1 to 1005 exact     1005/1005
(100 %)
9 diff
(99.2 %id)
GQ176502   .vg 47 to 1024 1 to 1014 I83N V114M D119V K185R     1017/1014
(100 %)
21 diff
(98.0 %id)
GQ176519   .vg 47 to 1024 1 to 962       932/962
(96 %)
15 diff
(98.5 %id)
GQ176527   .vg 47 to 1024 1 to 960       934/960
(97 %)
13 diff
(98.7 %id)
GQ176528   .vg 47 to 1024 1 to 972       934/972
(96 %)
14 diff
(98.6 %id)
GQ176530   .vg 47 to 1024 1 to 969       934/969
(96 %)
16 diff
(98.4 %id)
GQ176572   .vg 47 to 1024 1 to 1017 D110V V198A     988/1017
(97 %)
16 diff
(98.5 %id)
GQ176654   .vg 47 to 1024 1 to 960       934/960
(97 %)
16 diff
(98.4 %id)
GQ176717   .vg 47 to 1024 1 to 1089       934/1089
(85 %)
13 diff
(98.9 %id)
GQ176733   .vg 47 to 1024 1 to 969       934/969
(96 %)
17 diff
(98.3 %id)
GQ176798   .vg 47 to 1024 1 to 1074       958/1074
(89 %)
20 diff
(98.2 %id)
GQ176816   .vg 47 to 1024 1 to 1083       961/1083
(88 %)
19 diff
(98.3 %id)
GQ176834   .vg 47 to 1024 1 to 1109       963/1109
(86 %)
16 diff
(98.6 %id)
GQ176842   .vg 47 to 1024 1 to 1101       955/1101
(86 %)
17 diff
(98.5 %id)
BG818008 anaplastic oligodendroglioma with 1p/19qloss, brain .vg 48 to 854 11 to 818       808/821
(98 %)
20 diff
(97.6 %id)
BU198939   .vg 53 to 854 1 to 799       799/951
(84 %)
24 diff
(97.5 %id)
BG108539 Bone, osteosarcoma, cell line .vg 58 to 837 1 to 786       786/787
(99 %)
37 diff
(95.3 %id)
CF121988 lymph .vg 62 to 798 1 to 738       738/738
(100 %)
8 diff
(99.0 %id)
TI_154181394   .vg 69 to 854 70 to 857       788/791
(99 %)
9 diff
(98.9 %id)
GQ176669   .vg 88 to 1024 42 to 1098       923/1098
(84 %)
22 diff
(98.0 %id)
GQ176629   .vg 93 to 1024 47 to 1014       917/1014
(90 %)
25 diff
(97.6 %id)
GQ176652   .vg 99 to 1024 53 to 1086       912/1086
(83 %)
27 diff
(97.6 %id)
GQ176655   .vg 117 to 1024 1 to 890       864/890
(97 %)
19 diff
(97.9 %id)
GQ176656   .vg 119 to 951 1 to 869 V114M I155F     869/954
(91 %)
11 diff
(98.9 %id)
GQ176606   .vg 176 to 1024 32 to 1009       835/1009
(82 %)
25 diff
(97.6 %id)
GQ176809   .vh 1 to 806 1 to 835 E2R R59C T80I tiling clone,   835/835
(100 %)
13 diff
(98.5 %id)
GQ176833   .vi 1 to 934 3 to 944 K102R G161V S162P S163E R164T ... tiling clone,   948/944
(100 %)
27 diff
(97.2 %id)
NR_028469.1   .vj 1 to 6683 2 to 6684 exact RefSeq, tiling clone,   6684/6684
(100 %)
0 diff
(100 %id)
GQ176442   .vj 47 to 817 1 to 798 D110V V114M R153W N177D     769/798
(96 %)
16 diff
(98.0 %id)
GQ176451   .vj 47 to 817 1 to 798 V4A V114M     769/798
(96 %)
14 diff
(98.3 %id)
GQ176505   .vj 47 to 817 1 to 798 D77V Q104R R186I     769/798
(96 %)
16 diff
(98.0 %id)
GQ176506   .vj 47 to 817 1 to 795 exact     795/795
(100 %)
34 diff
(95.8 %id)
GQ176509   .vj 47 to 817 1 to 798 V25D M88V V114M     769/798
(96 %)
18 diff
(97.8 %id)
GQ176571   .vj 47 to 817 1 to 798 E103G     769/798
(96 %)
14 diff
(98.3 %id)
GQ176635   .vj 47 to 689 1 to 643       643/846
(76 %)
2 diff
(99.8 %id)
GQ176643   .vj 47 to 689 1 to 643       643/899
(71 %)
2 diff
(99.8 %id)
GQ176647   .vj 47 to 817 1 to 903 V114M L151P     799/903
(88 %)
17 diff
(98.2 %id)
GQ176713   .vj 47 to 817 1 to 870 T40A V114M     796/870
(91 %)
17 diff
(98.1 %id)
GQ176729   .vj 47 to 817 1 to 797 V114M G161V S162P S163E R164T ...     769/797
(96 %)
17 diff
(97.9 %id)
GQ176732   .vj 47 to 689 1 to 643       643/915
(70 %)
4 diff
(99.6 %id)
GQ176740   .vj 47 to 817 1 to 798 F23L V114M L135V     770/798
(96 %)
16 diff
(98.0 %id)
GQ176751   .vj 47 to 817 1 to 930 K92E L93P     796/930
(85 %)
18 diff
(98.1 %id)
GQ176764   .vj 47 to 689 1 to 643       643/951
(67 %)
3 diff
(99.7 %id)
GQ176783   .vj 47 to 689 1 to 643       643/945
(68 %)
5 diff
(99.5 %id)
GQ176839   .vj 47 to 817 1 to 917 G161V S162P S163E R164T N165Y ...     769/917
(83 %)
13 diff
(98.6 %id)
BU665160 blood .vj 105 to 525 1 to 421       421/421
(100 %)
2 diff
(99.6 %id)
BE535560 cervix .vj 140 to 981 1 to 831       825/907
(90 %)
47 diff
(94.9 %id)
GQ176651   .vj 142 to 817 94 to 919       695/919
(75 %)
25 diff
(97.3 %id)
CD695165 normal nasopharynx .vj 195 to 643 39 to 487       449/487
(92 %)
1 diff
(99.8 %id)
FN075528 breast carcinoma .vj 246 to 341 1 to 97       98/97
(101 %)
15 diff
(84.6 %id)
AW002937 pooled germ cell tumors .vj 346 to 1151 797 to 21       710/797
(89 %)
24 diff
(97.0 %id)
BF995151 placenta_normal .vj 392 to 527 1 to 136       136/136
(100 %)
4 diff
(97.1 %id)
AA065344   .vj 397 to 794 1 to 405       405/405
(100 %)
16 diff
(96.1 %id)
GQ176742   .vk 1 to 702 3 to 737 D15E V106M Y182H E184G tiling clone,   705/737
(95 %)
16 diff
(97.9 %id)
NR_028462.1   .vl 1 to 6813 2 to 6814 exact RefSeq, tiling clone,   6814/6814
(100 %)
0 diff
(100 %id)
BG569817 lung .vl 30 to 616 1 to 630   available from MGC,   580/630
(92 %)
20 diff
(96.9 %id)
GQ176453   .vl 47 to 947 1 to 927       909/927
(98 %)
18 diff
(98.1 %id)
GQ176501   .vl 47 to 947 1 to 940       937/940
(99 %)
13 diff
(98.7 %id)
GQ176579   .vl 47 to 947 1 to 937       911/937
(97 %)
10 diff
(99.0 %id)
GQ176823   .vl 47 to 947 1 to 931       931/931
(100 %)
11 diff
(98.9 %id)
NM_001164780.1   .vm 1 to 6626 2 to 6627 exact RefSeq,   6627/6627
(100 %)
0 diff
(100 %id)
AK307720 uterus .vm 39 to 1297 1 to 1304 V33M G127Q D128Q L129Q S130Q ... tiling clone,   1269/1304
(97 %)
15 diff
(98.9 %id)
DB247737 uterus .vm 40 to 593 2 to 556   capped   555/557
(99 %)
4 diff
(99.3 %id)
GQ176514   .vm 47 to 760 1 to 735       735/735
(100 %)
11 diff
(98.6 %id)
GQ176520   .vm 47 to 755 1 to 729       729/733
(99 %)
10 diff
(98.7 %id)
GQ176614   .vm 47 to 760 1 to 738       738/738
(100 %)
12 diff
(98.4 %id)
GQ176653   .vm 47 to 760 1 to 747       747/747
(100 %)
12 diff
(98.4 %id)
GQ176661   .vm 47 to 760 1 to 750       750/750
(100 %)
10 diff
(98.7 %id)
GQ176666   .vm 47 to 760 1 to 751       751/751
(100 %)
9 diff
(98.9 %id)
GQ176689   .vm 47 to 760 1 to 714   tiling clone,   714/714
(100 %)
1 diff
(99.9 %id)
GQ176702   .vm 47 to 760 1 to 744       744/744
(100 %)
15 diff
(98.0 %id)
GQ176711   .vm 47 to 760 1 to 726       726/726
(100 %)
12 diff
(98.4 %id)
GQ176723   .vm 47 to 760 1 to 714   tiling clone,   714/714
(100 %)
1 diff
(99.9 %id)
GQ176753   .vm 47 to 760 1 to 714       714/714
(100 %)
2 diff
(99.8 %id)
GQ176778   .vm 47 to 760 1 to 740       740/740
(100 %)
10 diff
(98.7 %id)
NR_028463.1   .vn 1 to 6525 2 to 6526 exact RefSeq, tiling clone,   6526/6526
(100 %)
0 diff
(100 %id)
GQ176465   .vn 47 to 659 1 to 637       637/637
(100 %)
9 diff
(98.6 %id)
GQ176613   .vo 1 to 534 3 to 557 P12L L38I D65E G148Q D149Q ... tiling clone,   557/557
(100 %)
11 diff
(98.1 %id)
BX506432 Liver .vp 1 to 595 6 to 598 L80E R81T R82E L84R A85P ... tiling clone,   598/598
(100 %)
8 diff
(98.7 %id)
DB286590 uterus .vp 1 to 493 4 to 496   tiling clone, capped   495/495
(100 %)
5 diff
(99.0 %id)
GQ176593   .vq 1 to 1022 3 to 1038 K8E Q9T E10R G11K S12L ... tiling clone,   1039/1050
(98 %)
31 diff
(97.1 %id)
GQ176708   .vq 1 to 1095 3 to 1108 K125E tiling clone,   1108/1108
(100 %)
15 diff
(98.7 %id)
GQ176752   .vq 1 to 1095 3 to 1271 exact tiling clone,   1107/1271
(87 %)
21 diff
(98.4 %id)
GQ176825   .vq 1 to 1095 3 to 672       537/672
(79 %)
14 diff
(98.0 %id)
GQ176826   .vr 1 to 985 3 to 999 A37V V53A tiling clone,   999/999
(100 %)
15 diff
(98.5 %id)
NM_001164778.1   .vs 1 to 6437 2 to 6438 exact RefSeq,   6438/6438
(100 %)
0 diff
(100 %id)
GQ176494   .vs 47 to 571 1 to 548 C14V A15L Q16N H17I C18A ... tiling clone,   548/548
(100 %)
9 diff
(98.4 %id)
GQ176575   .vs 47 to 571 1 to 570 S35P G144A G145A P146A I147A ...     570/570
(100 %)
42 diff
(92.7 %id)
GQ176581   .vs 47 to 571 1 to 573 G144A G145A P146A I147A R148A ... tiling clone,   573/573
(100 %)
40 diff
(93.1 %id)
AL709632 human skeletal muscle .vt 1 to 463 1 to 463 E18Q L20W R27T V28I tiling clone,   463/463
(100 %)
7 diff
(98.5 %id)
GQ176681   .vu 1 to 767 3 to 769 E48G tiling clone,   769/769
(100 %)
3 diff
(99.7 %id)
BU663071 blood .vu 5 to 628 1 to 623   tiling clone,   623/623
(100 %)
5 diff
(99.2 %id)
DB442115 testis .vv 1 to 424 6 to 431       431/431
(100 %)
7 diff
(98.4 %id)
NR_028461.1   .vv 1 to 6834 2 to 6835 exact RefSeq, tiling clone,   6835/6835
(100 %)
0 diff
(100 %id)
GQ176576   .vv 47 to 968 1 to 967 S135L     932/967
(96 %)
12 diff
(98.8 %id)
BG939925 blood .vv 56 to 388 1 to 333       333/334
(99 %)
3 diff
(99.2 %id)
AU098681   .vv 61 to 360 1 to 300       300/300
(100 %)
3 diff
(99.0 %id)
BE018570 cervix .vv 71 to 373 1 to 303       303/303
(100 %)
0 diff
(100 %id)
AA065343   .vv 74 to 454 1 to 381     Submitted on the opposite strand 381/405
(94 %)
6 diff
(98.6 %id)
AA352543   .vv 155 to 401 1 to 247       247/247
(100 %)
0 diff
(100 %id)
AA065342   .vv 897 to 1299 405 to 1     Submitted on the opposite strand 405/405
(100 %)
3 diff
(99.3 %id)
GQ176694   .vw 1 to 676 3 to 711 K111R tiling clone,   711/711
(100 %)
16 diff
(97.8 %id)
GQ176650   .vx 1 to 569 3 to 585 V68M E82G tiling clone,   586/585
(100 %)
25 diff
(95.8 %id)
NR_031765.1   .vy 1 to 6338 2 to 6339 exact RefSeq, tiling clone,   6339/6339
(100 %)
0 diff
(100 %id)
GQ176583   .vy 47 to 472 1 to 444       444/444
(100 %)
15 diff
(96.7 %id)
GQ176590   .vy 47 to 472 1 to 447       447/447
(100 %)
10 diff
(97.8 %id)
BX429535 placenta .vy 93 to 942 852 to 7 L2T D3K E4I D5R E6R ...     846/852
(99 %)
10 diff
(98.9 %id)
TI_149309995   .vy 97 to 795 833 to 90 L9X G86Q D87Q L88Q S89Q ... AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 709/998
(71 %)
21 diff
(97.9 %id)
BU688345 lung .vy 124 to 795 730 to 14 L9X G86Q D87Q L88Q S89Q ... AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 682/717
(95 %)
16 diff
(97.8 %id)
AB209309 brain .vy 140 to 848 1 to 748 G86Q D87Q L88Q S89Q G90Q ...     719/748
(96 %)
12 diff
(98.4 %id)
AI904953 breast .vy 141 to 448 1 to 365       365/365
(100 %)
11 diff
(97.0 %id)
BP393790 pancreatic islet .vy 142 to 471 8 to 337     Submitted on the opposite strand 330/337
(97 %)
6 diff
(98.3 %id)
AI888099 serous papillary carcinoma, high grade, 2pooled tumors, uterus .vy 157 to 796 661 to 1       661/661
(100 %)
13 diff
(98.1 %id)
BQ285925 Pancreas, Purified pancreatic islet .vy 205 to 802 625 to 1       625/625
(100 %)
7 diff
(98.9 %id)
G64288   .vy 260 to 429 1 to 211       208/211
(98 %)
11 diff
(94.8 %id)
AA702422 liver and spleen .vy 269 to 790 540 to 1       540/541
(99 %)
9 diff
(98.4 %id)
AI417052 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vy 284 to 795 548 to 1       548/549
(99 %)
9 diff
(98.4 %id)
AI962266 pooled germ cell tumors .vy 293 to 796 532 to 1       532/533
(99 %)
9 diff
(98.4 %id)
AI656450 pooled germ cell tumors .vy 325 to 796 498 to 1       498/498
(100 %)
8 diff
(98.4 %id)
BX431372 placenta .vy 359 to 1292 1 to 926       926/941
(98 %)
23 diff
(97.6 %id)
FN117790 breast carcinoma .vy 383 to 443 1 to 61       61/65
(93 %)
3 diff
(95.4 %id)
H49653 liver and spleen .vy 385 to 786 405 to 1       405/431
(93 %)
18 diff
(95.9 %id)
BG494888 lung, mucoepidermoid carcinoma .vy 385 to 706 439 to 762       324/762
(42 %)
12 diff
(98.5 %id)
AI357266 pooled germ cell tumors .vy 388 to 803 416 to 1       416/469
(88 %)
0 diff
(100 %id)
AA775925 liver and spleen .vy 403 to 797 395 to 1       395/395
(100 %)
1 diff
(99.8 %id)
AI634122 pooled germ cell tumors .vy 409 to 795 387 to 1       387/387
(100 %)
5 diff
(98.8 %id)
AA233334.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .vy 429 to 796 368 to 1     also hits gene RAB23 368/368
(100 %)
3 diff
(99.2 %id)
BF093983 uterus_tumor .vy 474 to 712 240 to 4       237/271
(87 %)
0 diff
(100 %id)
BX434136 placenta .vy 474 to 1300 841 to 1       841/841
(100 %)
26 diff
(97.0 %id)
CA309171 Alveolar Macrophage, lung .vy 476 to 797 340 to 19   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 322/322
(100 %)
0 diff
(100 %id)
N87368   .vy 478 to 776 14 to 310       297/316
(93 %)
15 diff
(95.3 %id)
FN119240 breast carcinoma .vy 512 to 628 120 to 1     Submitted on the opposite strand 120/120
(100 %)
5 diff
(95.9 %id)
BQ424237 eye, retinoblastoma .vy 524 to 1453 1 to 930       930/930
(100 %)
7 diff
(99.3 %id)
BU507888 leiomyosarcoma, uterus .vy 532 to 1562 1 to 1053       1053/1226
(85 %)
35 diff
(97.2 %id)
AI919582 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .vy 537 to 804 268 to 1       268/268
(100 %)
1 diff
(99.7 %id)
CD367728 Alveolar Macrophage, lung .vy 584 to 1312 747 to 19   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 729/729
(100 %)
0 diff
(100 %id)
CA425099 cell lines, Chondrosarcoma .vy 606 to 1312 725 to 19   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 707/707
(100 %)
0 diff
(100 %id)
BF803912 colon_ins .vy 633 to 903 322 to 48     Submitted on the opposite strand 275/322
(85 %)
0 diff
(100 %id)
BF803933 colon_ins .vy 638 to 929 290 to 1     Submitted on the opposite strand 290/290
(100 %)
6 diff
(98.0 %id)
BP393195 pancreatic islet .vy 803 to 1304 1 to 502     Submitted on the opposite strand 502/502
(100 %)
1 diff
(99.9 %id)
BX417347 placenta .vy 893 to 1276 388 to 6       703/785
(89 %)
27 diff
(96.6 %id)
BU153544 embryonal carcinoma, cell line, testis .vz 1 to 725 1 to 731 exact tiling clone,   731/801
(91 %)
15 diff
(98.2 %id)
BQ341283 nervous_normal .wa-u 1 to 399 1 to 400 T2P tiling clone,   400/400
(100 %)
3 diff
(99.3 %id)
AV763611 bone marrow .wb 1 to 424 3 to 421 K85V V86W W87G G88L L89E ... tiling clone,   421/421
(100 %)
5 diff
(98.9 %id)
NR_028467.1   .wc 1 to 6837 2 to 6838 exact RefSeq, tiling clone,   6838/6838
(100 %)
0 diff
(100 %id)
BQ775895 Bone, Human Chondrosarcoma Cell Line .wc 492 to 1297 823 to 19   AAA Possibly primed on the genome, locally A rich (20/21 A in genome downstream of last aligned base) 805/805
(100 %)
2 diff
(99.8 %id)
GQ176624   .wd 1 to 953 3 to 967 exact tiling clone,   967/967
(100 %)
23 diff
(97.7 %id)
GQ176529   .we 1 to 917 3 to 946 exact tiling clone,   946/947
(99 %)
9 diff
(99.1 %id)
GQ176534   .we 1 to 919 3 to 945 L62S Q63L tiling clone,   945/945
(100 %)
11 diff
(98.9 %id)
DR003436 fetal brain .wf 1 to 707 7 to 717 E2X I4P F5C H6F E7H ... tiling clone,   717/717
(100 %)
11 diff
(98.5 %id)
DA376220 thalamus .wf 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
GQ176715   .wg 1 to 930 3 to 932 exact tiling clone,   932/932
(100 %)
1 diff
(99.9 %id)
GQ176770   .wh 1 to 590 3 to 618 exact tiling clone,   618/618
(100 %)
9 diff
(98.6 %id)
NR_028468.1   .wi 1 to 6669 2 to 6670 exact RefSeq, tiling clone,   6670/6670
(100 %)
0 diff
(100 %id)
GQ176480   .wi 47 to 803 1 to 784 exact     784/784
(100 %)
8 diff
(99.0 %id)
GQ176553   .wi 47 to 798 1 to 764 N17D     764/768
(99 %)
14 diff
(98.2 %id)
GQ176558   .wi 47 to 803 1 to 769 W22*     769/769
(100 %)
14 diff
(98.2 %id)
GQ176595   .wi 47 to 803 1 to 778 exact     775/778
(99 %)
16 diff
(98.0 %id)
GQ176739   .wi 47 to 803 1 to 738       692/738
(93 %)
17 diff
(97.7 %id)
GQ176775   .wi 47 to 590 1 to 544       544/552
(98 %)
4 diff
(99.3 %id)
FN161456 breast carcinoma .wi 53 to 123 1 to 70       70/70
(100 %)
6 diff
(91.5 %id)
CB130332 Liver .wi 60 to 437 1 to 378       378/378
(100 %)
1 diff
(99.8 %id)
AW501012 lymph .wi 62 to 498 1 to 437       437/437
(100 %)
6 diff
(98.7 %id)
CF143823 lymph .wi 62 to 468 1 to 407       407/407
(100 %)
5 diff
(98.8 %id)
CF143824 lymph .wi 62 to 468 1 to 407       407/407
(100 %)
5 diff
(98.8 %id)
DA366962 subthalamic nucleus .wi 65 to 591 2 to 532   capped   531/534
(99 %)
8 diff
(98.6 %id)
DA312587 hippocampus .wi 66 to 475 2 to 412   capped   411/411
(100 %)
1 diff
(99.8 %id)
TI_154155518   .wi 69 to 517 80 to 528       449/450
(99 %)
2 diff
(99.6 %id)
TI_154175397   .wi 69 to 488 78 to 497       420/420
(100 %)
2 diff
(99.6 %id)
TI_154175399   .wi 69 to 487 78 to 496       419/420
(99 %)
3 diff
(99.3 %id)
NM_001164776.1   .wj 1 to 6284 2 to 6285 exact RefSeq,   6285/6285
(100 %)
0 diff
(100 %id)
GQ176439   .wj 47 to 418 1 to 411 I77T G93A G94A P95A I96A ...     411/411
(100 %)
9 diff
(97.9 %id)
GQ176444   .wj 47 to 418 1 to 411 G93A G94A P95A I96A R97A ... tiling clone,   411/411
(100 %)
8 diff
(98.1 %id)
GQ176447   .wj 47 to 418 1 to 411 F28L G93A G94A P95A I96A ...     411/411
(100 %)
9 diff
(97.9 %id)
GQ176450   .wj 47 to 418 1 to 411 A89T G93A G94A P95A I96A ...     411/411
(100 %)
8 diff
(98.1 %id)
GQ176468   .wj 47 to 418 1 to 396 E2G A88T G93A G94A P95A ...     396/396
(100 %)
9 diff
(97.8 %id)
GQ176473   .wj 47 to 418 1 to 399 S34Y G93A G94A P95A I96A ...     399/399
(100 %)
8 diff
(98.0 %id)
GQ176667   .wj 47 to 418 1 to 411 G93A G94A P95A I96A R97A ...     411/411
(100 %)
7 diff
(98.3 %id)
GQ176718   .wj 47 to 418 1 to 371 exact tiling clone,   371/371
(100 %)
2 diff
(99.5 %id)
GQ176460   .wk 1 to 367 3 to 396 G92A G93A P94A I95A R96A ... tiling clone,   396/396
(100 %)
8 diff
(98.0 %id)
GQ176461   .wk 1 to 367 3 to 393 G92A G93A P94A I95A R96A ...     393/393
(100 %)
7 diff
(98.3 %id)
GQ176814   .wl 1 to 755 3 to 783 L38Q K73R tiling clone,   783/783
(100 %)
12 diff
(98.5 %id)
NM_001164774.1   .wm 1 to 6239 2 to 6240 exact RefSeq,   6240/6240
(100 %)
0 diff
(100 %id)
GQ176471   .wm 47 to 373 1 to 354 A68V G78A G79A P80A I81A ... tiling clone,   354/354
(100 %)
8 diff
(97.8 %id)
GQ176472   .wm 47 to 373 1 to 354 C14*     354/354
(100 %)
9 diff
(97.5 %id)
GQ176478   .wm 47 to 373 1 to 354 G78A G79A P80A I81A R82A ... tiling clone,   354/354
(100 %)
7 diff
(98.1 %id)
GQ176482   .wm 47 to 373 1 to 351 G78A G79A P80A I81A R82A ... tiling clone,   351/351
(100 %)
7 diff
(98.1 %id)
GQ176491   .wm 47 to 373 1 to 351 I36N G78A G79A P80A I81A ...     351/351
(100 %)
8 diff
(97.8 %id)
GQ176555   .wm 47 to 373 1 to 339 G78A G79A P80A I81A R82G ... tiling clone,   339/339
(100 %)
10 diff
(97.1 %id)
GQ176557   .wm 47 to 373 1 to 339 G78A G79A P80A I81A R82G ...     339/339
(100 %)
10 diff
(97.1 %id)
GQ176561   .wm 47 to 373 1 to 339 G78A G79A P80A I81A R82G ...     339/339
(100 %)
10 diff
(97.1 %id)
GQ176584   .wm 47 to 373 1 to 348 G78A G79A P80A I81A R82A ...     348/348
(100 %)
8 diff
(97.8 %id)
NR_028460.1   .wn 1 to 6351 2 to 6352 exact RefSeq, tiling clone,   6352/6352
(100 %)
0 diff
(100 %id)
GQ176574   .wn 47 to 485 1 to 478 Q63R     475/478
(99 %)
33 diff
(93.1 %id)
GQ176582   .wn 47 to 485 1 to 478 exact     475/478
(99 %)
32 diff
(93.4 %id)
NM_001164777.1   .wo 1 to 6119 2 to 6120 exact RefSeq,   6120/6120
(100 %)
0 diff
(100 %id)
GQ176449   .wo 47 to 253 1 to 246   tiling clone,   246/246
(100 %)
15 diff
(94.0 %id)
BU656576 blood .wp 1 to 376 11 to 386 exact     376/387
(97 %)
9 diff
(97.7 %id)
BU660835 blood .wp 1 to 367 12 to 378 exact tiling clone, AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 367/378
(97 %)
7 diff
(98.2 %id)
GQ176683   .wq 1 to 272 3 to 274 exact tiling clone,   274/274
(100 %)
1 diff
(99.7 %id)
NR_028457.1   .wr 1 to 6981 2 to 6982 exact RefSeq, tiling clone,   6982/6982
(100 %)
0 diff
(100 %id)
NR_028465.1   .ws 1 to 6845 2 to 6846 exact RefSeq, tiling clone,   6846/6846
(100 %)
0 diff
(100 %id)
GQ176470   .ws 47 to 979 1 to 957 Q87R E100G     957/957
(100 %)
14 diff
(98.6 %id)
NR_028458.1   .wt 1 to 6825 2 to 6826 exact RefSeq, tiling clone,   6826/6826
(100 %)
0 diff
(100 %id)
NR_028470.1   .wu 1 to 6141 2 to 6142 exact RefSeq, tiling clone,   6142/6142
(100 %)
0 diff
(100 %id)
GQ176562   .wu 47 to 275 1 to 256       256/256
(100 %)
8 diff
(96.9 %id)
NM_001164782.1   .wv 1 to 6074 2 to 6075 exact RefSeq,   6075/6075
(100 %)
0 diff
(100 %id)
GQ176541   .wv 47 to 208 1 to 189   tiling clone,   189/189
(100 %)
8 diff
(95.8 %id)
AK021920 whole embryo, mainly head .ww-u 1 to 1415 2 to 1415 exact tiling clone, available from FLJ,   1415/1415
(100 %)
1 diff
(100.0 %id)
AU119874 whole embryo, mainly head .ww-u 1 to 444 2 to 445 exact capped   444/444
(100 %)
2 diff
(99.6 %id)
BQ933102 sciatic nerve .ww-u 733 to 1420 1 to 688   tiling clone,   688/688
(100 %)
2 diff
(99.8 %id)
BQ365669 placenta_normal .ww-u 832 to 1178 1 to 347       347/360
(96 %)
12 diff
(96.7 %id)
AU146105 whole embryo, mainly head .ww-u 864 to 1415 550 to 1       550/550
(100 %)
5 diff
(99.1 %id)
AA639270 Ewing's sarcoma .ww-u 998 to 1266 28 to 296       269/312
(86 %)
2 diff
(99.4 %id)
GQ176500   .wx 1 to 1063 3 to 1098 M7T V33M E67D R105G tiling clone,   1075/1098
(97 %)
20 diff
(98.2 %id)
GQ176811   .wy 1 to 1009 3 to 1038 T98A G127Q D128Q L129Q S130Q ... tiling clone,   1038/1038
(100 %)
8 diff
(99.3 %id)
BU684328 lung, Primary Lung Cystic Fibrosis EpithelialCells .wz-u 286 to 811 544 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (25/28 A in genome downstream of last aligned base) 526/526
(100 %)
0 diff
(100 %id)
TI_154113854   .xa 1 to 786 865 to 82 S54C A72T tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 784/973
(80 %)
37 diff
(96.2 %id)
CA448831 Chondrosarcoma, Left Pelvis .xa 187 to 786 619 to 19 S54C A72T AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 601/601
(100 %)
3 diff
(99.6 %id)
GQ176730   .xb 1 to 724 3 to 900 exact tiling clone,   765/900
(85 %)
18 diff
(98.0 %id)
GQ176794   .xb 1 to 724 3 to 861 V33M tiling clone,   748/861
(86 %)
17 diff
(98.1 %id)
AX721199   .xc 1 to 671 1 to 678   tiling clone,   678/678
(100 %)
9 diff
(98.7 %id)
AX721190   .xc 3 to 698 1 to 696   tiling clone,   653/696
(93 %)
12 diff
(98.3 %id)
AA946800 2 pooled tumors (clear cell type), Kidney .xc 208 to 702 496 to 3   tiling clone,   494/496
(99 %)
5 diff
(99.0 %id)
AI022655 liver and spleen .xc 212 to 705 503 to 10 L63P D67E     494/503
(98 %)
2 diff
(99.7 %id)
AI082541   .xc 274 to 705 433 to 4 T45M A46P V47S R48A L49C ...     430/433
(99 %)
5 diff
(98.9 %id)
AA992475   .xc 324 to 705 386 to 6 D67E     381/386
(98 %)
4 diff
(99.0 %id)
AI370518   .xc 501 to 701 201 to 1       201/201
(100 %)
0 diff
(100 %id)
BI832235 brain, medulla .xd 1 to 640 1 to 637 F13L G14V A15L E16K D17T ... available from MGC,   637/637
(100 %)
6 diff
(99.1 %id)
TI_57176424   .xd 1 to 640 1 to 637 F13L G14V A15L E16K D17T ...     637/637
(100 %)
6 diff
(99.1 %id)
BC039675 Brain, adult medulla .xd 2 to 645 1 to 644 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 644/644
(100 %)
0 diff
(100 %id)
AI051176 liver and spleen .xd 207 to 646 440 to 1       440/440
(100 %)
1 diff
(99.8 %id)
AW973373   .xd 297 to 607 110 to 420       311/420
(74 %)
11 diff
(97.4 %id)
AA552878 low-grade prostatic neoplasia, Prostate .xd 311 to 620 1 to 309       309/309
(100 %)
2 diff
(99.4 %id)
AI678554 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .xd 333 to 646 313 to 1       313/313
(100 %)
1 diff
(99.7 %id)
AI589412 adenocarcinoma, Pancreas .xd 374 to 645 282 to 11   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 272/272
(100 %)
0 diff
(100 %id)
AX721191   .xe 1 to 631 338 to 968 exact tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 588/968
(60 %)
20 diff
(98.0 %id)
FN154079 breast carcinoma .xe 71 to 167 99 to 1     Submitted on the opposite strand 99/99
(100 %)
4 diff
(96.0 %id)
CD299799 Pooled-Skin .xf-u 1 to 548 1 to 555 M12L Q22P F23V L24P T25E ... tiling clone,   555/864
(64 %)
19 diff
(97.9 %id)
TI_149280128   .xg 1 to 497 586 to 76 exact tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 504/702
(71 %)
3 diff
(99.6 %id)
BU679060 lung, Primary Lung Epithelial Cells .xg 1 to 497 522 to 12 exact AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 504/505
(99 %)
3 diff
(99.5 %id)
AV762551 bone marrow .xg 53 to 475 1 to 420 exact     420/422
(99 %)
3 diff
(99.3 %id)
BE439571 Trabecular meshwork .xh-u 1 to 474 1 to 498 G18A G19A P20A I21A R22A ... tiling clone,   498/502
(99 %)
7 diff
(98.7 %id)
AA677999 liver and spleen .xh-u 26 to 474 449 to 1 exact tiling clone,   449/449
(100 %)
0 diff
(100 %id)
BE042695 colon, moderately-differentiated adenocarcinoma .xi 1 to 460 460 to 1 exact tiling clone,   460/460
(100 %)
0 diff
(100 %id)
BE220057 carcinoid, lung .xj-u 1 to 445 443 to 1 K11N Y13* tiling clone,   443/443
(100 %)
1 diff
(99.8 %id)
AA758675   .xk 1 to 388 391 to 1 T5P P6L R7P A8R R10L ... tiling clone,   391/391
(100 %)
9 diff
(97.7 %id)
AV659733 corresponding non cancerous liver tissue Gene ATXN3, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV659747 corresponding non cancerous liver tissue Gene ATXN3, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AL694323   Gene ATXN3, variant not shown         This clone was ignored    
AV718244 hypothalamus Gene ATXN3, variant not shown         Suspected internal deletion, this clone was ignored    
GQ176538   Gene ATXN3, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
GQ176648   Gene ATXN3, variant not shown         This clone was ignored    
GQ176736   Gene ATXN3, variant not shown         This clone was ignored    
GQ176754   Gene ATXN3, variant not shown         Suspected internal deletion, this clone was ignored    
GQ176837   Gene ATXN3, variant not shown         Suspected internal deletion, this clone was ignored    
GQ176844   Gene ATXN3, variant not shown         This clone was ignored    
AV724799 hypothalamus Gene ATXN3, variant not shown         Suspected internal deletion, this clone was ignored    
BG939926 blood Gene ATXN3, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AK225884 colon Gene ATXN3, variant not shown         This clone was ignored    
S75313   Gene ATXN3, variant not shown         This clone was ignored    
BX097708 pooled Gene ATXN3, variant not shown         This clone was ignored    
T67812 Liver Gene ATXN3, variant not shown         This clone was ignored    
T67962 Liver Gene ATXN3, variant not shown         This clone was ignored    
AA737644 germinal center B cell Gene ATXN3, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AA905251 pooled Gene ATXN3, variant not shown         This clone was ignored    
AA961624 pooled Gene ATXN3, variant not shown         This clone was ignored    
TI_149296361   Gene ATXN3, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf, .vg, .vh, .vi, .vj, .vk, .vl, .vm, .vn, .vo, .vp, .vq, .vr, .vs, .vt, .vu, .vv, .vw, .vx, .vy, .vz, .wa-u, .wb, .wc, .wd, .we, .wf, .wg, .wh, .wi, .wj, .wk, .wl, .wm, .wn, .wo, .wp, .wq, .wr, .ws, .wt, .wu, .wv, .ww-u, .wx, .wy, .wz-u, .xa, .xb, .xc, .xd, .xe, .xf-u, .xg, .xh-u, .xi, .xj-u, .xk Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI