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Gene ATRNL1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
135 supporting clones for gene ATRNL1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_207303.2   .a 1 to 8732 1 to 8732 exact RefSeq,   8732/8732
(100 %)
0 diff
(100 %id)
BX342540   .a 99 to 908 1 to 812   tiling clone, fully sequenced,   812/812
(100 %)
3 diff
(99.7 %id)
DB477472 hippocampus .a 261 to 760 1 to 500       500/500
(100 %)
0 diff
(100 %id)
DR005827 Prostate .a 365 to 870 1 to 507       507/511
(99 %)
9 diff
(98.3 %id)
AY442317   .a 387 to 4526 1 to 4140   tiling clone,   4140/4140
(100 %)
0 diff
(100 %id)
EL734546 mixed .a 387 to 1064 1 to 675       675/675
(100 %)
3 diff
(99.6 %id)
TI_1948212585   .a 387 to 1006 129 to 747       619/1468
(42 %)
16 diff
(99.0 %id)
TI_1948212586   .a 387 to 1400 131 to 1146   AAA   1016/1385
(73 %)
42 diff
(97.0 %id)
TI_1948212868   .a 387 to 1097 130 to 842       713/1356
(52 %)
21 diff
(98.5 %id)
TI_1948212869   .a 387 to 1223 130 to 966       837/1354
(61 %)
16 diff
(98.9 %id)
TI_1948213148   .a 387 to 1195 125 to 938       814/1393
(58 %)
42 diff
(97.0 %id)
TI_1948213149   .a 387 to 1342 134 to 1085       952/1345
(70 %)
31 diff
(97.7 %id)
TI_1948213431   .a 387 to 1001 127 to 747       621/1406
(44 %)
41 diff
(97.1 %id)
TI_1948213432   .a 387 to 1223 135 to 967       833/1287
(64 %)
21 diff
(98.4 %id)
BG209437   .a 681 to 1204 38 to 564       527/828
(63 %)
27 diff
(96.8 %id)
CV390696 head_neck .a 814 to 931 1 to 118       118/119
(99 %)
9 diff
(92.5 %id)
BX342539   .a 847 to 1725 927 to 49   fully sequenced,   879/885
(99 %)
14 diff
(98.5 %id)
CF457376 peripheral nervous system .a 901 to 1625 31 to 755       725/755
(96 %)
8 diff
(99.0 %id)
BP872592 embryonal kidney .a 942 to 1460 1 to 519       519/521
(99 %)
5 diff
(99.1 %id)
BU102062   .a 1145 to 1592 465 to 18       448/471
(95 %)
0 diff
(100 %id)
BU102061   .a 1187 to 1627 1 to 441       441/441
(100 %)
1 diff
(99.8 %id)
AB011106 brain .a 1440 to 8739 1 to 7302   tiling clone, available from KIAA,   7302/7302
(100 %)
7 diff
(100.0 %id)
DA326494 hippocampus .a 2041 to 2667 2 to 628   capped   627/627
(100 %)
0 diff
(100 %id)
BE702219 nervous_normal .a 2282 to 2612 346 to 16       331/346
(95 %)
1 diff
(99.8 %id)
DA325474 hippocampus .a 2349 to 2949 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
AW057921 fibrotheoma, ovary .a 2367 to 3002 631 to 1       631/631
(100 %)
24 diff
(96.2 %id)
DA240263 brain .a 2537 to 3015 2 to 480   capped   479/479
(100 %)
1 diff
(99.8 %id)
DA187668 amygdala .a 3213 to 3753 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
AA984799 schizophrenic brain S-11 frontal lobe .a 3381 to 3714 350 to 10       348/350
(99 %)
8 diff
(97.8 %id)
DA155711 amygdala .a 3707 to 4181 91 to 566   capped   476/573
(83 %)
7 diff
(98.8 %id)
CB268899 adipose .a 3858 to 4181 1 to 324       324/472
(68 %)
2 diff
(99.6 %id)
DA305192 hippocampus .a 4171 to 4747 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA569995 whole embryo, mainly head .a 4180 to 5054 6 to 878   capped   873/877
(99 %)
13 diff
(98.6 %id)
DA913544   .a 4180 to 4652 101 to 573   capped   473/572
(82 %)
6 diff
(99.0 %id)
DB636476 hippocampus .a 4250 to 4981 1 to 731       731/731
(100 %)
10 diff
(98.7 %id)
DA187808 amygdala .a 4265 to 4815 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA292696 hippocampus .a 4284 to 4764 90 to 571   capped   482/570
(84 %)
6 diff
(99.0 %id)
DA414281 thalamus .a 4432 to 4999 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
Z45165 brain, total brain .a 4453 to 4776 1 to 324       324/324
(100 %)
0 diff
(100 %id)
F11243 brain, total brain .a 4453 to 4801 1 to 349       349/349
(100 %)
0 diff
(100 %id)
DA322503 hippocampus .a 4697 to 5244 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
R13880 whole brain .a 4752 to 5139 1 to 391       391/396
(98 %)
5 diff
(98.8 %id)
H11917 whole brain .a 4757 to 5184 1 to 438       438/440
(99 %)
14 diff
(96.9 %id)
DA336228 hippocampus .a 4794 to 5370 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
H16843 whole brain .a 4893 to 5374 1 to 488       488/490
(99 %)
16 diff
(96.8 %id)
R53366 whole brain .a 4894 to 5365 1 to 479       479/480
(99 %)
23 diff
(95.3 %id)
R53650 whole brain .a 4894 to 5372 1 to 483       483/498
(96 %)
15 diff
(97.0 %id)
BX500409 Liver .a 4901 to 5449 1 to 549   tiling clone,   549/549
(100 %)
2 diff
(99.7 %id)
DA230527 brain .a 4970 to 5604 2 to 637   capped   636/636
(100 %)
2 diff
(99.7 %id)
Z45104 brain, total brain .a 5204 to 5403 1 to 200       200/200
(100 %)
1 diff
(99.5 %id)
DA408769 thalamus .a 5227 to 5907 2 to 682   capped   681/681
(100 %)
0 diff
(100 %id)
EL955100 eyeball .a 5261 to 5839 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
BU163935 large cell carcinoma, lung .a 5315 to 5973 1 to 662       662/960
(68 %)
21 diff
(97.9 %id)
W78901 liver and spleen .a 5490 to 5916 1 to 433   fully sequenced,   433/433
(100 %)
9 diff
(98.0 %id)
CR736483   .a 5616 to 6159 1 to 544       544/544
(100 %)
0 diff
(100 %id)
AV748505 Pituitary .a 5721 to 6273 27 to 575       549/584
(94 %)
7 diff
(98.9 %id)
DB356724 whole embryo, mainly head .a 5753 to 6316 558 to 1       558/587
(95 %)
11 diff
(98.2 %id)
AW975148   .a 5780 to 6190 89 to 499       411/501
(82 %)
7 diff
(98.7 %id)
AW151108 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 5795 to 6314 523 to 4       520/523
(99 %)
0 diff
(100 %id)
BX108387 whole brain .a 5806 to 6311 520 to 15   AAA   506/506
(100 %)
1 diff
(99.9 %id)
AW190029 adenocarcinoma, Pancreas .a 5835 to 6318 486 to 3       484/486
(99 %)
0 diff
(100 %id)
AI588945 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 5848 to 6311 480 to 17   AAA   464/464
(100 %)
3 diff
(99.4 %id)
W84674 liver and spleen .a 5886 to 6316 431 to 1   fully sequenced,   431/431
(100 %)
0 diff
(100 %id)
R53539 whole brain .a 5903 to 6318 428 to 3       426/474
(89 %)
0 diff
(100 %id)
H16736 whole brain .a 5904 to 6311 425 to 11   AAA   415/415
(100 %)
8 diff
(98.1 %id)
AA658995 alveolar rhabdomyosarcoma .a 5914 to 6153 1 to 240       240/240
(100 %)
0 diff
(100 %id)
AA701270 liver and spleen .a 5918 to 6303 386 to 1       386/386
(100 %)
0 diff
(100 %id)
R53968 whole brain .a 5948 to 6308 383 to 16       368/390
(94 %)
0 diff
(100 %id)
Z40891 brain, total brain .a 6008 to 6311 304 to 1       304/304
(100 %)
0 diff
(100 %id)
F08905 brain, total brain .a 6046 to 6311 266 to 1       266/266
(100 %)
0 diff
(100 %id)
AA599662   .a 6047 to 6318 273 to 2   tiling clone,   272/273
(99 %)
0 diff
(100 %id)
F04952 brain, total brain .a 6077 to 6305 231 to 3       229/241
(95 %)
0 diff
(100 %id)
BM724450 eye, fetal eye .a 6211 to 6917 1 to 706       706/706
(100 %)
2 diff
(99.8 %id)
DA169292 amygdala .a 6217 to 6781 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
R37016 whole brain .a 6285 to 6524 250 to 11   AAA   240/240
(100 %)
0 diff
(100 %id)
DA520559 brain .a 6300 to 6875 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA180216 amygdala .a 6316 to 6882 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA513472 brain .a 6469 to 7044 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA612856   .a 6593 to 7161 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
AW373624 breast .a 6714 to 7301 8 to 595       588/596
(98 %)
17 diff
(97.2 %id)
CB148181 brain .a 6751 to 7461 1 to 711       711/711
(100 %)
0 diff
(100 %id)
BX645323   .a 6826 to 7459 1 to 634       634/634
(100 %)
0 diff
(100 %id)
Z44968 brain, total brain .a 7123 to 7393 1 to 271       271/271
(100 %)
2 diff
(99.3 %id)
BF968454 adrenal cortex carcinoma, cell line, adrenal gland .a 7149 to 7928 1 to 781       781/898
(86 %)
30 diff
(96.7 %id)
DA913642   .a 7268 to 7841 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
TI_151797990   .a 7415 to 8087 109 to 786   tiling clone, AAA   678/1063
(63 %)
17 diff
(98.5 %id)
F12675 brain, total brain .a 7461 to 7770 1 to 309       309/309
(100 %)
2 diff
(99.4 %id)
BC046219 Peripheral Nervous System, sympathetictrunk .a 7465 to 8730 1 to 1266   tiling clone, available from MGC, AAA   1266/1266
(100 %)
1 diff
(100.0 %id)
BQ720406 sympathetic trunk .a 7468 to 7991 1 to 529   available from MGC,   529/1154
(45 %)
15 diff
(98.8 %id)
T74356 whole brain .a 7484 to 7868 1 to 387       387/484
(79 %)
5 diff
(99.0 %id)
BQ272135 Pancreas, Purified pancreatic islet .a 7895 to 8478 11 to 594       584/594
(98 %)
6 diff
(99.0 %id)
DB536289 hippocampus .a 8013 to 8730 1 to 720     Submitted on the opposite strand 720/720
(100 %)
4 diff
(99.5 %id)
BM679681 eye, fetal eye .a 8111 to 8730 640 to 19   AAA   622/622
(100 %)
1 diff
(99.9 %id)
BM666162 eye, fetal eyes .a 8153 to 8743 611 to 19   AAA   593/593
(100 %)
1 diff
(99.9 %id)
BQ271808 Pancreas, Purified pancreatic islet .a 8172 to 8729 558 to 1       558/558
(100 %)
0 diff
(100 %id)
AI817331 normal prostate, Prostate .a 8203 to 8730 551 to 24   AAA   528/528
(100 %)
3 diff
(99.5 %id)
CK825611 Pancreas, Purified pancreatic islet .a 8237 to 8705 469 to 1     Submitted on the opposite strand 469/469
(100 %)
6 diff
(98.8 %id)
AI826808 normal prostate, Prostate .a 8319 to 8732 416 to 1       416/416
(100 %)
5 diff
(98.8 %id)
BG151540 sciatic nerve .a 8319 to 8732 417 to 2       416/417
(99 %)
0 diff
(100 %id)
AI215596 pooled .a 8333 to 8732 404 to 3       402/404
(99 %)
0 diff
(100 %id)
AI523727 Prostate .a 8360 to 8733 374 to 1       374/374
(100 %)
0 diff
(100 %id)
AI750104 colon .a 8395 to 8730 366 to 29   AAA   338/338
(100 %)
6 diff
(98.3 %id)
AK127277 hippocampus .b 1 to 4463 1 to 4463 S943N tiling clone, available from FLJ,   4463/4463
(100 %)
4 diff
(100.0 %id)
BC035157 testis .c 1 to 1821 1 to 1824 Q2E P20A R136P A137G R138P ... tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1824/1836
(99 %)
9 diff
(99.6 %id)
BI459119 testis .c 1 to 682 1 to 697   available from MGC,   697/802
(86 %)
24 diff
(97.1 %id)
DB458181 testis .c 6 to 504 1 to 499       499/500
(99 %)
16 diff
(96.8 %id)
BC139916 Donated clones,Novartis FGA collection .c 17 to 1821 1 to 1807   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1807/1825
(99 %)
7 diff
(99.7 %id)
BC139923 Donated clones,Novartis FGA collection .c 17 to 1821 1 to 1807   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1807/1825
(99 %)
7 diff
(99.7 %id)
BC047716 Brain, hippocampus .c 61 to 1810 1 to 1752   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1752/1818
(96 %)
2 diff
(99.9 %id)
BM546653 brain, hippocampus .c 61 to 683 20 to 643   available from MGC,   624/1161
(53 %)
8 diff
(99.4 %id)
CR602409 neuroblastoma .c 73 to 1795 1 to 1723   tiling clone,   1723/1723
(100 %)
0 diff
(100 %id)
BX416724 neuroblastoma .c 73 to 962 1 to 894   fully sequenced,   894/894
(100 %)
16 diff
(98.3 %id)
BX397545 Placenta Cot 25-normalized .c 284 to 913 1 to 629   fully sequenced,   629/629
(100 %)
3 diff
(99.6 %id)
CR612664 Placenta Cot 25-normalized .c 285 to 1780 1 to 1496       1496/1496
(100 %)
0 diff
(100 %id)
BX379716 Placenta Cot 25-normalized .c 852 to 1780 926 to 1   fully sequenced,   926/926
(100 %)
4 diff
(99.6 %id)
TI_1948212871   .c 881 to 1791 1038 to 129       910/1293
(70 %)
19 diff
(98.6 %id)
BX416723 neuroblastoma .c 932 to 1785 863 to 12   fully sequenced,   852/863
(98 %)
20 diff
(97.7 %id)
TI_1948213434   .c 1001 to 1791 918 to 126       793/1283
(61 %)
17 diff
(98.7 %id)
TI_1948212588   .c 1007 to 1791 912 to 126       787/1330
(59 %)
25 diff
(98.2 %id)
TI_1948213151   .c 1014 to 1791 907 to 130       778/1306
(59 %)
4 diff
(99.7 %id)
BM546090 ovary (pool of 3) .c 1055 to 1813 21 to 781       761/785
(96 %)
3 diff
(99.7 %id)
TI_1948213433   .c 1219 to 1791 706 to 133       574/1317
(43 %)
10 diff
(99.3 %id)
DB546077 hippocampus .c 1374 to 1814 1 to 443     Submitted on the opposite strand 443/447
(99 %)
2 diff
(99.6 %id)
DB523676 testis .c 1379 to 1815 1 to 439   tiling clone, Submitted on the opposite strand 439/441
(99 %)
3 diff
(99.4 %id)
AA350021 brain .c 1473 to 1808 340 to 1       340/351
(96 %)
7 diff
(98.1 %id)
TI_1948212587   .c 1481 to 1791 447 to 136       312/1371
(22 %)
0 diff
(100 %id)
BX111308   .c 1492 to 1810 36 to 356   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 321/369
(86 %)
2 diff
(99.5 %id)
AA598844   .c 1492 to 1808 319 to 1       319/330
(96 %)
1 diff
(99.7 %id)
CB050655 Prostate .c 1589 to 1810 10 to 233   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 224/265
(84 %)
2 diff
(99.3 %id)
CR614866 B cells (Ramos cell line) Cot 25-normalized .d 1 to 1583 1 to 1583 exact tiling clone,   1583/1583
(100 %)
0 diff
(100 %id)
CX782953 human embryonic stem cells .e 1 to 740 24 to 763   tiling clone, Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 740/763
(96 %)
6 diff
(99.3 %id)
TI_57172340   .e 33 to 932 27 to 930       904/938
(96 %)
27 diff
(97.2 %id)
BI831591 brain, medulla .e 38 to 932 1 to 899   tiling clone,   899/907
(99 %)
25 diff
(97.3 %id)
CX782874 human embryonic stem cells .e 787 to 1403 638 to 20   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 619/638
(97 %)
0 diff
(100 %id)
AK294917 brain .f 1 to 1646 1 to 1646 exact tiling clone,   1646/1646
(100 %)
2 diff
(99.9 %id)
DC322792 brain .f 1 to 648 1 to 649       649/649
(100 %)
1 diff
(99.9 %id)
BM686061 eye, Retina Foveal and Macular .g 1 to 659 8 to 666   tiling clone,   659/666
(98 %)
7 diff
(99.0 %id)
BU726096 eye, Retina Foveal and Macular .g 1302 to 1774 494 to 22   tiling clone,   473/494
(95 %)
0 diff
(100 %id)
BI461113 testis .h 1 to 633 1 to 632   tiling clone, available from MGC,   632/632
(100 %)
7 diff
(98.9 %id)
BC029592 testis .h 6 to 1711 1 to 1708 I292* tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1708/1734
(98 %)
8 diff
(99.6 %id)
AK299592 brain .i 1 to 1330 1 to 1330 S73N tiling clone,   1330/1330
(100 %)
3 diff
(99.8 %id)
DC375081 brain .i 1 to 569 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
BG258755 embryonal carcinoma, cell line, testis .j 1 to 707 1 to 708 A156T F175L V176Y F178* tiling clone,   708/897
(78 %)
14 diff
(98.5 %id)
DA805776 brain .k 1 to 527 2 to 528   tiling clone, capped   527/527
(100 %)
3 diff
(99.5 %id)
DB327163 brain .k 1260 to 1797 540 to 1 I152* tiling clone,   540/540
(100 %)
2 diff
(99.7 %id)
CV388591 nervous_normal .l 1 to 312 1 to 311 I27M V28Y Q29K G30V G31D ... tiling clone,   311/311
(100 %)
2 diff
(99.4 %id)
DA157930 amygdala .m 1 to 576 2 to 577 exact tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
DA267514 caudate nucleus .n 1 to 528 2 to 530 exact tiling clone, capped   529/529
(100 %)
1 diff
(99.9 %id)
T05266   .o-u 1 to 324 1 to 324 exact tiling clone,   324/324
(100 %)
1 diff
(99.7 %id)
DB308949 hippocampus Gene ATRNL1, variant not shown         This clone was ignored    
DA318528 hippocampus Gene ATRNL1, variant not shown       capped This clone was ignored    
CB217779 mandible, pooled Gene ATRNL1, variant not shown         This clone was ignored    
CB217780 mandible, pooled Gene ATRNL1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI