To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene ATRNTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
385 supporting clones for gene ATRN back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR995544 T-Lymphocytes .a 1 to 477 1 to 477   tiling clone,   477/487
(97 %)
1 diff
(99.8 %id)
NM_139321.2   .a 12 to 8669 1 to 8658 exact RefSeq,   8658/8658
(100 %)
3 diff
(100.0 %id)
DB072722 testis .a 13 to 163 2 to 152   capped   151/151
(100 %)
0 diff
(100 %id)
DB240822 trachea .a 13 to 605 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DB282557 uterus .a 13 to 346 2 to 335   capped   334/334
(100 %)
0 diff
(100 %id)
DR004633 placenta .a 24 to 511 1 to 489       489/507
(96 %)
6 diff
(98.9 %id)
DB496904 hypothalamus .a 33 to 750 1 to 718       718/720
(99 %)
13 diff
(98.2 %id)
DB501362 hypothalamus .a 33 to 689 1 to 657       657/717
(91 %)
13 diff
(98.2 %id)
DA408779 thalamus .a 34 to 638 2 to 607   capped   606/606
(100 %)
5 diff
(99.2 %id)
DB071765 testis .a 34 to 255 2 to 224   capped   223/223
(100 %)
1 diff
(99.6 %id)
DA439335 tongue, tumor tissue .a 38 to 379 2 to 344   capped   343/343
(100 %)
1 diff
(99.8 %id)
DA236268 brain .a 53 to 642 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
TI_927047560   .a 55 to 1207 45 to 1195       1151/1204
(95 %)
36 diff
(97.1 %id)
TI_927047830   .a 55 to 1097 40 to 1082       1043/1233
(84 %)
12 diff
(99.1 %id)
TI_927047834   .a 55 to 1158 39 to 1139       1101/1212
(90 %)
14 diff
(98.9 %id)
DN992031 brain, whole brain .a 87 to 687 33 to 633       601/633
(94 %)
7 diff
(98.9 %id)
CN350412 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 116 to 862 1 to 746       746/746
(100 %)
2 diff
(99.8 %id)
TI_927044478   .a 349 to 1475 1 to 1124       1124/1224
(91 %)
23 diff
(98.2 %id)
TI_927044255   .a 356 to 1539 10 to 1179   tiling clone,   1170/1238
(94 %)
15 diff
(98.8 %id)
TI_927045609   .a 529 to 1615 1092 to 12       1081/1225
(88 %)
6 diff
(99.6 %id)
DA856057 placenta .a 561 to 1101 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
AL048842 testis .a 575 to 1077 1 to 502       502/502
(100 %)
5 diff
(99.1 %id)
BE709733 head_neck .a 582 to 1098 524 to 8       517/524
(98 %)
6 diff
(98.9 %id)
CD644584 Embryonic Stem cells .a 596 to 1309 28 to 734       707/792
(89 %)
10 diff
(98.8 %id)
DB149694 thymus .a 625 to 1177 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
TI_927044259   .a 751 to 1887 12 to 1148       1137/1253
(90 %)
20 diff
(98.5 %id)
TI_927044482   .a 751 to 1885 12 to 1146       1135/1255
(90 %)
12 diff
(99.1 %id)
AA368140 placenta .a 848 to 1141 1 to 297       297/297
(100 %)
3 diff
(99.0 %id)
DA452216 tongue, tumor tissue .a 891 to 1483 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
TI_927044260   .a 926 to 2175 1 to 1257       1257/1266
(99 %)
38 diff
(97.0 %id)
TI_927044483   .a 929 to 1996 1 to 1064       1064/1227
(86 %)
13 diff
(99.0 %id)
BG673763 Nasal biopsy .a 953 to 1343 1 to 390       390/390
(100 %)
1 diff
(99.8 %id)
BF773440 epid_tumor .a 1219 to 1535 325 to 9     Submitted on the opposite strand 317/325
(97 %)
2 diff
(99.4 %id)
TI_927045607   .a 1223 to 2332 1120 to 14   tiling clone,   1107/1249
(88 %)
11 diff
(99.2 %id)
BF206327 brain, neuroblastoma .a 1281 to 1887 1 to 598       598/609
(98 %)
10 diff
(98.4 %id)
BF313142 brain, neuroblastoma .a 1281 to 1973 1 to 688       688/953
(72 %)
15 diff
(98.5 %id)
BF316716 brain, neuroblastoma .a 1281 to 1971 1 to 689       689/942
(73 %)
22 diff
(97.7 %id)
BE259981 brain, neuroblastoma .a 1301 to 1789 1 to 492       492/493
(99 %)
5 diff
(99.0 %id)
DA560613 heart .a 1318 to 1874 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
TI_927044472   .a 1323 to 2426 8 to 1108       1101/1219
(90 %)
13 diff
(99.0 %id)
TI_927044249   .a 1331 to 2561 16 to 1240       1201/1240
(96 %)
31 diff
(97.5 %id)
AW579586 head_neck .a 1358 to 1755 21 to 418       398/427
(93 %)
12 diff
(97.2 %id)
AA350292 brain .a 1539 to 1934 1 to 396     Submitted on the opposite strand 396/396
(100 %)
1 diff
(99.8 %id)
TI_927046895   .a 1554 to 2526 967 to 8       960/1153
(83 %)
12 diff
(99.0 %id)
BI089332 cervix .a 1593 to 2293 1 to 703       703/706
(99 %)
18 diff
(97.5 %id)
BE880905 large cell carcinoma, undifferentiated, lung .a 1599 to 2245 1 to 646       646/991
(65 %)
12 diff
(98.8 %id)
TI_927044473   .a 1664 to 2832 12 to 1172       1161/1233
(94 %)
25 diff
(98.0 %id)
TI_927044250   .a 1665 to 2774 14 to 1122       1109/1233
(89 %)
20 diff
(98.4 %id)
TI_927046894   .a 1722 to 2942 1220 to 7       1214/1238
(98 %)
14 diff
(98.9 %id)
BQ370569 placenta_normal .a 1828 to 2092 1 to 265       265/265
(100 %)
10 diff
(96.3 %id)
BG015062 placenta_normal .a 1861 to 2130 281 to 12       270/281
(96 %)
0 diff
(100 %id)
AI372811   .a 1882 to 2191 1 to 312       312/312
(100 %)
7 diff
(97.8 %id)
DR761065 embryonic stem .a 1950 to 2778 1 to 829       829/829
(100 %)
6 diff
(99.3 %id)
TI_927046248   .a 1975 to 3146 1198 to 6       1193/1276
(93 %)
36 diff
(97.2 %id)
TI_927044251   .a 1976 to 3048 1 to 1075       1075/1226
(87 %)
18 diff
(98.6 %id)
TI_927044474   .a 1985 to 3207 12 to 1227       1216/1229
(98 %)
26 diff
(97.9 %id)
TI_927046896   .a 2048 to 3135 1118 to 16   AAA   1103/1276
(86 %)
16 diff
(98.8 %id)
DB044063 testis .a 2128 to 2697 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA539638 Kidney .a 2186 to 2780 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
TI_927044252   .a 2189 to 3352 11 to 1169   tiling clone,   1162/1245
(93 %)
23 diff
(98.2 %id)
TI_927044475   .a 2195 to 3394 24 to 1229       1206/1285
(93 %)
31 diff
(97.6 %id)
TI_927046194   .a 2315 to 3140 843 to 18       826/843
(97 %)
7 diff
(99.2 %id)
R87660 liver and spleen .a 2358 to 2709 1 to 364     Submitted on the opposite strand 364/416
(87 %)
18 diff
(95.7 %id)
BX440935 brain, fetal brain .a 2455 to 3415 1 to 958       958/961
(99 %)
11 diff
(98.9 %id)
AI372809   .a 2483 to 2861 383 to 1       383/383
(100 %)
4 diff
(99.0 %id)
TI_927045608   .a 2488 to 3570 1079 to 5       1073/1227
(87 %)
11 diff
(99.2 %id)
DA368237 subthalamic nucleus .a 2493 to 3019 2 to 529   tiling clone, capped   528/528
(100 %)
4 diff
(99.3 %id)
DB021978 testis .a 2498 to 3004 2 to 508   capped   507/507
(100 %)
2 diff
(99.7 %id)
DB019712 testis .a 2507 to 3066 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
AI372810   .a 2526 to 2845 320 to 1       320/320
(100 %)
1 diff
(99.7 %id)
TI_927044253   .a 2531 to 3669 1 to 1137       1137/1232
(92 %)
16 diff
(98.8 %id)
TI_927044476   .a 2531 to 3700 1 to 1166       1166/1240
(94 %)
17 diff
(98.7 %id)
TI_927045606   .a 2596 to 3707 1127 to 17       1142/1248
(91 %)
16 diff
(98.8 %id)
T92696 lung .a 2596 to 2920 1 to 335       335/355
(94 %)
16 diff
(95.5 %id)
BM783258 stomach .a 2613 to 3292 1 to 680       680/680
(100 %)
1 diff
(99.9 %id)
BM783264 stomach .a 2613 to 3244 1 to 632       632/632
(100 %)
1 diff
(99.9 %id)
BM783685 stomach .a 2613 to 3285 1 to 673       673/673
(100 %)
1 diff
(99.9 %id)
BM783718 stomach .a 2613 to 3289 1 to 677       677/677
(100 %)
1 diff
(99.9 %id)
BM783739 stomach .a 2613 to 3285 1 to 673       673/681
(98 %)
1 diff
(99.9 %id)
BM783773 stomach .a 2613 to 3292 1 to 680       680/680
(100 %)
1 diff
(99.9 %id)
BM783788 stomach .a 2613 to 3285 1 to 673       673/683
(98 %)
2 diff
(99.8 %id)
BM783821 stomach .a 2613 to 3285 1 to 673       673/677
(99 %)
3 diff
(99.6 %id)
BM772968 stomach .a 2613 to 3097 1 to 485       485/486
(99 %)
2 diff
(99.6 %id)
BM773003 stomach .a 2613 to 3244 1 to 632       632/632
(100 %)
1 diff
(99.9 %id)
BG563729 Liver .a 2669 to 3343 1 to 674       674/674
(100 %)
6 diff
(99.2 %id)
AK000356   .a 2695 to 5227 1 to 2538   tiling clone, available from FLJ, AAA   2538/2558
(99 %)
8 diff
(99.7 %id)
BG945444 amnion_normal .a 2707 to 2840 134 to 2       133/134
(99 %)
0 diff
(100 %id)
BF700035 brain, primitive neuroectoderm .a 2737 to 3409 1 to 682       682/683
(99 %)
34 diff
(95.1 %id)
BI850289 brain, primitive neuroectoderm .a 2737 to 3328 1 to 591       591/591
(100 %)
2 diff
(99.7 %id)
DA213683 brain .a 2738 to 3283 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
H11351.
matches multiple genes
whole brain .a 2771 to 3275 1 to 519     also hits gene VSTM2A 519/527
(98 %)
23 diff
(95.7 %id)
AA350293 brain .a 2805 to 3195 393 to 1     Submitted on the opposite strand 393/400
(98 %)
3 diff
(99.3 %id)
AA297697 heart .a 2838 to 3060 1 to 223       223/230
(96 %)
2 diff
(99.2 %id)
TI_927044254   .a 2871 to 3896 1 to 1016       1016/1159
(87 %)
22 diff
(98.2 %id)
TI_927044477   .a 2872 to 3902 1 to 1031       1031/1208
(85 %)
7 diff
(99.5 %id)
EC442178 Prostate .a 2916 to 2991 76 to 1       76/76
(100 %)
0 diff
(100 %id)
EC504710 Prostate .a 2916 to 2993 79 to 1       79/79
(100 %)
1 diff
(98.8 %id)
EC440053 Prostate .a 2918 to 2997 80 to 1       80/80
(100 %)
0 diff
(100 %id)
EC513732 Prostate .a 2918 to 2987 80 to 11       70/80
(87 %)
0 diff
(100 %id)
EC552281 Prostate .a 2922 to 3005 84 to 1       84/84
(100 %)
0 diff
(100 %id)
EC567014 Prostate .a 2929 to 3005 77 to 1       77/82
(93 %)
0 diff
(100 %id)
BF672370 muscle (skeletal) .a 2934 to 3648 1 to 709       671/917
(73 %)
20 diff
(97.9 %id)
BQ307981 breast .a 2977 to 3468 1 to 496       496/496
(100 %)
28 diff
(94.4 %id)
AB011120 brain .a 3031 to 8657 1 to 5632   tiling clone, available from KIAA,   5632/5632
(100 %)
7 diff
(99.9 %id)
AA297214   .a 3039 to 3313 1 to 279       279/279
(100 %)
5 diff
(98.3 %id)
EC518520 Prostate .a 3059 to 3152 94 to 1       94/94
(100 %)
0 diff
(100 %id)
CN335283 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3087 to 3740 1 to 655       655/655
(100 %)
1 diff
(99.9 %id)
BG678679 skin, squamous cell carcinoma .a 3097 to 3913 1 to 819       819/933
(87 %)
19 diff
(98.0 %id)
EC563104 Prostate .a 3102 to 3204 102 to 1       102/102
(100 %)
1 diff
(99.1 %id)
AA298732   .a 3117 to 3423 1 to 309       309/319
(96 %)
3 diff
(99.1 %id)
BF963698 nervous_normal .a 3172 to 3655 484 to 1       484/484
(100 %)
2 diff
(99.6 %id)
BF880955 lung_tumor .a 3234 to 3615 1 to 382       382/399
(95 %)
8 diff
(98.0 %id)
BE894518 melanotic melanoma, skin .a 3259 to 3892 1 to 633       633/633
(100 %)
5 diff
(99.3 %id)
BF853962 lung_normal .a 3376 to 3909 1 to 535       535/544
(98 %)
7 diff
(98.8 %id)
BF854487 lung_normal .a 3387 to 3904 567 to 49     Submitted on the opposite strand 521/567
(91 %)
1 diff
(99.9 %id)
BF928756 nervous_tumor .a 3401 to 3701 1 to 300       300/313
(95 %)
2 diff
(99.4 %id)
CN335284 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3571 to 3904 1 to 334       334/334
(100 %)
0 diff
(100 %id)
BI004303 head_normal .a 3625 to 4052 52 to 480       429/484
(88 %)
15 diff
(97.0 %id)
DA804643 brain .a 4133 to 4627 2 to 496   capped   495/495
(100 %)
1 diff
(99.8 %id)
BX644466   .a 4156 to 4655 1 to 500       500/500
(100 %)
1 diff
(99.8 %id)
CN335282 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 4239 to 4784 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
D81046 brain .a 4274 to 4576 1 to 308       308/308
(100 %)
9 diff
(97.1 %id)
DA732515   .a 4581 to 5151 2 to 570   capped   569/576
(98 %)
2 diff
(99.7 %id)
DA326235 hippocampus .a 4586 to 5121 2 to 544   capped   543/543
(100 %)
5 diff
(99.1 %id)
DA803077 brain .a 4587 to 5137 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
DB220670 trachea .a 4589 to 5163 2 to 583   capped   582/582
(100 %)
4 diff
(99.4 %id)
AW992328 breast_normal .a 4595 to 5235 644 to 1     Submitted on the opposite strand 644/644
(100 %)
13 diff
(98.0 %id)
AI648497 ovary, tumor, 5 pooled (see description) .a 4655 to 4810 156 to 1       156/156
(100 %)
0 diff
(100 %id)
DA226602 brain .a 4662 to 5189 2 to 535   capped   534/534
(100 %)
3 diff
(99.5 %id)
DA093338 cerebellum .a 4712 to 5212 2 to 507   capped   506/506
(100 %)
2 diff
(99.7 %id)
BF361782 nervous_normal .a 4762 to 5086 349 to 17       333/354
(94 %)
19 diff
(94.7 %id)
DA117131 cerebellum .a 4779 to 5324 2 to 547   tiling clone, capped   546/546
(100 %)
0 diff
(100 %id)
DA418348 thalamus .a 4787 to 5339 2 to 559   capped   558/558
(100 %)
4 diff
(99.3 %id)
CN335285 embryonic stem cells, DMSO-treated H9 cellline .a 4890 to 5300 1 to 409       409/409
(100 %)
2 diff
(99.6 %id)
AL121349 melanoma (MeWo cell line) .a 4905 to 5458 1 to 555       555/558
(99 %)
4 diff
(99.3 %id)
DA191799 amygdala .a 4918 to 5379 2 to 463   capped   462/462
(100 %)
1 diff
(99.8 %id)
AA378603 synovial membrane .a 4982 to 5322 1 to 341       341/342
(99 %)
1 diff
(99.8 %id)
BF088273 head_neck .a 5019 to 5249 24 to 254       231/254
(90 %)
6 diff
(97.7 %id)
DA801515 brain .a 5030 to 5514 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
DA727043   .a 5058 to 5597 2 to 542   capped   541/541
(100 %)
4 diff
(99.3 %id)
DA777016 brain .a 5065 to 5642 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
D60710 brain .a 5178 to 5458 305 to 25       281/305
(92 %)
0 diff
(100 %id)
CK000541 mixed .a 5224 to 6005 8 to 788       781/788
(99 %)
6 diff
(99.3 %id)
DA414428 thalamus .a 5256 to 5826 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
BP274217 Kidney .a 5265 to 5847 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA417774 thalamus .a 5266 to 5822 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA413573 thalamus .a 5278 to 5832 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
AI092619 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 5356 to 5802 447 to 1       447/447
(100 %)
1 diff
(99.8 %id)
DA533898 brain .a 5487 to 6062 2 to 577   capped   576/576
(100 %)
3 diff
(99.5 %id)
DA755039   .a 5506 to 6046 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA714829   .a 5563 to 6101 2 to 540   tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
CN350414 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 5569 to 6018 1 to 451       451/451
(100 %)
2 diff
(99.6 %id)
DB466953 hippocampus .a 5723 to 6129 1 to 405       405/405
(100 %)
25 diff
(93.9 %id)
DB472358 hippocampus .a 5723 to 6210 1 to 489       489/489
(100 %)
4 diff
(99.2 %id)
CB269066 adipose .a 5774 to 6285 1 to 512       512/512
(100 %)
2 diff
(99.7 %id)
CB265446 adipose .a 5787 to 6267 1 to 480       480/480
(100 %)
3 diff
(99.4 %id)
CB265646 adipose .a 5836 to 6283 1 to 448       448/448
(100 %)
1 diff
(99.8 %id)
BP290740 lung .a 5841 to 6341 1 to 501       501/581
(86 %)
6 diff
(99.0 %id)
DB178549 kidney, tumor tissue .a 5900 to 6460 2 to 558   capped   557/557
(100 %)
4 diff
(99.3 %id)
BE081854 breast .a 5906 to 6213 1 to 308       308/308
(100 %)
2 diff
(99.4 %id)
AU133380   .a 5912 to 6657 2 to 748   capped   747/747
(100 %)
5 diff
(99.4 %id)
DA469451   .a 5916 to 6481 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BM722761 eye, fetal eye .a 5932 to 6541 1 to 610     Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 610/610
(100 %)
1 diff
(99.9 %id)
DB166606 kidney, tumor tissue .a 5935 to 6496 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
AL600986   .a 6046 to 6799 1 to 758       758/758
(100 %)
12 diff
(98.5 %id)
CD359695 testis .a 6047 to 6831 48 to 844       797/899
(88 %)
6 diff
(99.4 %id)
AW630543 2 pooled high-grade transitional celltumors, genitourinary tract .a 6062 to 6427 1 to 366       366/366
(100 %)
1 diff
(99.8 %id)
DB196817 trachea .a 6132 to 6695 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA872237 Prostate .a 6144 to 6681 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
BP238155 Liver .a 6170 to 6785 1 to 615       615/615
(100 %)
5 diff
(99.2 %id)
BP341675 stomach mucosa .a 6199 to 6781 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA532606 brain .a 6202 to 6756 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA871486 Prostate .a 6203 to 6735 2 to 535   capped   534/534
(100 %)
2 diff
(99.7 %id)
DA866921 Prostate .a 6206 to 6745 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DB176342 kidney, tumor tissue .a 6215 to 6774 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
CA415219 Knee, Osteoarthritic Cartilage .a 6241 to 6950 728 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 710/710
(100 %)
0 diff
(100 %id)
DA071736 cerebellum .a 6267 to 6846 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
CA425093 cell lines, Chondrosarcoma .a 6271 to 6950 698 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 680/680
(100 %)
1 diff
(99.9 %id)
AL134717 brain .a 6327 to 6928 1 to 602       602/602
(100 %)
0 diff
(100 %id)
DA208879 brain .a 6344 to 6913 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
BP242517 Liver .a 6392 to 6969 1 to 578       578/582
(99 %)
5 diff
(99.2 %id)
D20236   .a 6435 to 6697 1 to 267     Submitted on the opposite strand 267/267
(100 %)
6 diff
(97.8 %id)
BE934759 head_neck .a 6447 to 6705 31 to 289       259/297
(87 %)
8 diff
(97.4 %id)
BP244083 Liver .a 6447 to 7012 1 to 566       566/566
(100 %)
11 diff
(98.1 %id)
DA935735 Spleen .a 6465 to 7034 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA162658 amygdala .a 6467 to 7058 2 to 593   capped   592/592
(100 %)
2 diff
(99.7 %id)
DA752302   .a 6503 to 7081 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
CN350413 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 6507 to 6935 1 to 429       429/429
(100 %)
0 diff
(100 %id)
BX951569   .a 6518 to 7103 1 to 586       586/586
(100 %)
1 diff
(99.9 %id)
BP238364 Liver .a 6518 to 7090 1 to 573       573/573
(100 %)
3 diff
(99.5 %id)
BX494673 Liver .a 6524 to 7103 1 to 580       580/580
(100 %)
2 diff
(99.7 %id)
DA079813 cerebellum .a 6551 to 7117 2 to 568   tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
DA845895 placenta .a 6551 to 7104 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DA847889 placenta .a 6551 to 7112 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA662752   .a 6556 to 7084 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
AI829733 pooled .a 6576 to 6951 378 to 3       376/378
(99 %)
0 diff
(100 %id)
BP238489 Liver .a 6579 to 7139 1 to 561       561/612
(91 %)
2 diff
(99.7 %id)
DB178515 kidney, tumor tissue .a 6581 to 7124 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
BP266348 thyroid .a 6583 to 7160 1 to 578       578/578
(100 %)
3 diff
(99.5 %id)
BP266367 thyroid .a 6583 to 7164 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BP266929 thyroid .a 6583 to 7161 1 to 580       580/580
(100 %)
5 diff
(99.2 %id)
BP311685 brain .a 6583 to 7161 1 to 581       581/581
(100 %)
3 diff
(99.5 %id)
BP243149 Liver .a 6588 to 7168 1 to 581       581/581
(100 %)
4 diff
(99.4 %id)
DA816509   .a 6610 to 7161 2 to 553   capped   552/552
(100 %)
2 diff
(99.7 %id)
AI083581 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6647 to 6950 304 to 1       304/304
(100 %)
0 diff
(100 %id)
AW627963 pooled .a 6653 to 6956 306 to 2       305/336
(90 %)
0 diff
(100 %id)
AA345684 gall bladder .a 6731 to 6903 1 to 173       173/173
(100 %)
0 diff
(100 %id)
BP211259 cerebellum .a 6741 to 7337 1 to 597       597/597
(100 %)
3 diff
(99.5 %id)
W21340 lung .a 6770 to 7217 1 to 450       450/450
(100 %)
5 diff
(98.9 %id)
BP351619   .a 6796 to 7382 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
BE765248 nervous_tumor .a 6803 to 6995 1 to 192       192/192
(100 %)
1 diff
(99.5 %id)
DA254018 caudate nucleus .a 6808 to 7384 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
CB152712 brain .a 6811 to 7421 1 to 611       611/611
(100 %)
1 diff
(99.9 %id)
AA971608 carcinoid, lung .a 6845 to 6956 113 to 2       112/113
(99 %)
0 diff
(100 %id)
CB153255 brain .a 6847 to 7344 1 to 498       498/498
(100 %)
1 diff
(99.8 %id)
DA256452 caudate nucleus .a 6855 to 7421 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA267740 caudate nucleus .a 6873 to 7403 2 to 532   capped   531/531
(100 %)
2 diff
(99.7 %id)
BP258773 heart .a 6885 to 7384 1 to 498       498/560
(88 %)
12 diff
(97.9 %id)
BP333726 salivary gland .a 6902 to 7447 1 to 547   tiling clone,   547/566
(96 %)
6 diff
(99.0 %id)
BE767052 nervous_tumor .a 7003 to 7401 1 to 405       405/405
(100 %)
33 diff
(91.9 %id)
BU934179 mixed (pool of 40 RNAs) .a 7017 to 7787 1 to 782       782/789
(99 %)
24 diff
(97.0 %id)
DB364042   .a 8105 to 8657 552 to 1   tiling clone,   552/586
(94 %)
11 diff
(98.2 %id)
BU740233 eye, fetal eye .a 8159 to 8666 526 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 508/508
(100 %)
1 diff
(99.9 %id)
AU154727   .a 8183 to 8664 481 to 1       481/483
(99 %)
12 diff
(97.6 %id)
N93535 lung .a 8384 to 8657 274 to 1       274/300
(91 %)
1 diff
(99.7 %id)
AW627506 2 pooled high-grade transitional celltumors, genitourinary tract .a 8421 to 8666 247 to 2   tiling clone,   246/247
(99 %)
0 diff
(100 %id)
AK293010 trachea .b 1 to 3967 1 to 3967 V650A tiling clone,   3967/3967
(100 %)
2 diff
(100.0 %id)
NM_139322.2   .b 1 to 3967 1 to 3967 exact RefSeq,   3967/3967
(100 %)
0 diff
(100 %id)
BC101705 Brain, cerebral cortex, PCR rescued clones .b 51 to 3930 1 to 3880   tiling clone,   3880/3880
(100 %)
2 diff
(100.0 %id)
AF106861   .b 91 to 3909 1 to 3819       3819/3819
(100 %)
8 diff
(99.8 %id)
AK302730 testis .c 1 to 3703 2 to 3704 K479Q tiling clone,   3704/3704
(100 %)
3 diff
(100.0 %id)
DC402160 testis .c 1 to 569 2 to 571       571/571
(100 %)
1 diff
(99.9 %id)
T69367 Liver .c 1971 to 2265 1 to 297       297/517
(57 %)
11 diff
(97.9 %id)
TI_927047655   .c 2378 to 3534 1218 to 64   tiling clone,   1155/1278
(90 %)
23 diff
(98.3 %id)
TI_927047838   .c 2449 to 3534 1143 to 62       1082/1226
(88 %)
9 diff
(99.3 %id)
TI_927047842   .c 2449 to 3534 1140 to 58       1083/1232
(87 %)
8 diff
(99.4 %id)
TI_927044479   .c 2778 to 3534 12 to 767       756/1237
(61 %)
13 diff
(99.0 %id)
TI_927044256   .c 2784 to 3534 15 to 765       751/1245
(60 %)
9 diff
(99.3 %id)
BX431593 brain, fetal brain .c 2791 to 3559 1 to 766       766/772
(99 %)
11 diff
(98.6 %id)
TI_149303484   .c 2800 to 3716 981 to 76   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 906/974
(93 %)
23 diff
(97.7 %id)
TI_159723230   .c 2863 to 3716 927 to 79   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 849/985
(86 %)
11 diff
(98.9 %id)
TI_927044257   .c 2945 to 3534 10 to 598       589/1237
(47 %)
9 diff
(99.3 %id)
TI_927044480   .c 2945 to 3534 7 to 595       589/1175
(50 %)
9 diff
(99.3 %id)
BF853681 lung_normal .c 2962 to 3549 1 to 588       588/595
(98 %)
9 diff
(98.5 %id)
BF853006 lung_normal .c 2963 to 3549 1 to 587       587/598
(98 %)
10 diff
(98.4 %id)
TI_154109312   .c 2964 to 3716 837 to 92   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 746/907
(82 %)
11 diff
(98.8 %id)
BF853965 lung_normal .c 2969 to 3518 7 to 558       552/560
(98 %)
11 diff
(98.1 %id)
CB242644 Human Lung Epithelial cells, lung .c 2975 to 3722 746 to 1       746/746
(100 %)
2 diff
(99.8 %id)
BQ183626 Knee, Osteoarthritic Cartilage .c 2978 to 3722 742 to 1       742/744
(99 %)
4 diff
(99.5 %id)
CA502816 Human Lung Epithelial cells, lung .c 2982 to 3703 739 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 721/721
(100 %)
1 diff
(99.9 %id)
DB567917 hypothalamus .c 3007 to 3703 1 to 685   AAA Submitted on the opposite strand 685/685
(100 %)
18 diff
(97.4 %id)
DB572557 hypothalamus .c 3008 to 3703 1 to 695   AAA Submitted on the opposite strand 695/695
(100 %)
1 diff
(99.9 %id)
AI818764 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 3031 to 3703 669 to 1       669/671
(99 %)
13 diff
(98.1 %id)
BM981492 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 3041 to 3722 681 to 1       681/681
(100 %)
2 diff
(99.8 %id)
BF853021 lung_normal .c 3069 to 3551 483 to 1     Submitted on the opposite strand 483/483
(100 %)
4 diff
(99.2 %id)
DR422389 eye, Pterygium .c 3080 to 3683 1 to 604       604/604
(100 %)
0 diff
(100 %id)
CA306924 Alveolar Macrophage, lung .c 3088 to 3722 634 to 1       634/643
(98 %)
2 diff
(99.7 %id)
AI818750 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 3116 to 3703 588 to 1       588/589
(99 %)
10 diff
(98.4 %id)
BU531905 mixed (pool of 40 RNAs) .c 3232 to 3704 1 to 473       473/477
(99 %)
2 diff
(99.6 %id)
BE671400 carcinoid, lung .c 3262 to 3706 445 to 1       445/445
(100 %)
0 diff
(100 %id)
AI076479   .c 3264 to 3723 464 to 5   tiling clone,   460/464
(99 %)
0 diff
(100 %id)
BF475948 sciatic nerve .c 3320 to 3716 408 to 13   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 396/402
(98 %)
5 diff
(98.8 %id)
TI_159684715   .c 3333 to 3723 471 to 81       391/1065
(36 %)
8 diff
(99.3 %id)
T69292 Liver .c 3335 to 3668 344 to 1       344/406
(84 %)
12 diff
(97.1 %id)
AA771958 parathyroid gland, parathyroid tumor .c 3361 to 3716 370 to 15   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 356/357
(99 %)
0 diff
(100 %id)
R84298 liver and spleen .c 3385 to 3699 316 to 1     Submitted on the opposite strand 316/316
(100 %)
1 diff
(99.7 %id)
DB098964 testis .d 1 to 594 2 to 595 exact tiling clone, capped   594/594
(100 %)
0 diff
(100 %id)
H11324.
matches multiple genes
whole brain .e 1 to 542 556 to 18 N10T H11P P12K N13I I14L ... tiling clone, AAA also hits gene CLVS1 539/580
(92 %)
13 diff
(97.8 %id)
BX103722 whole brain .e 34 to 547 530 to 15   tiling clone, AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 516/519
(99 %)
0 diff
(100 %id)
DA571466 whole embryo, mainly head .f-u 1 to 729 2 to 732 T34P S83X P89X tiling clone, capped   731/731
(100 %)
6 diff
(99.2 %id)
BF792696 adrenal cortex carcinoma, cell line, adrenal gland .f-u 19 to 739 1 to 719 exact     719/719
(100 %)
5 diff
(99.4 %id)
CB150796 cervix, Uterine .f-u 26 to 477 1 to 452       452/452
(100 %)
6 diff
(98.7 %id)
BP220189 colon .f-u 37 to 551 1 to 515       515/550
(93 %)
23 diff
(95.9 %id)
AA325718 brain, cerebellum .f-u 60 to 396 1 to 340       340/340
(100 %)
5 diff
(98.6 %id)
AW961007   .f-u 61 to 462 1 to 401       401/419
(95 %)
24 diff
(94.3 %id)
AW609044 pnet .f-u 91 to 407 26 to 343       318/344
(92 %)
5 diff
(98.6 %id)
BE767106 nervous_tumor .f-u 91 to 472 401 to 15       387/401
(96 %)
0 diff
(100 %id)
CK002380 brain/CNS, Bulk tissue from Human Spinal cord .f-u 169 to 798 1 to 625 exact     625/666
(93 %)
8 diff
(98.8 %id)
BG029740 breast, mammary adenocarcinoma, cell line .f-u 220 to 992 15 to 792 K69I     778/1073
(72 %)
34 diff
(96.9 %id)
BI047165 prostate_tumor .f-u 254 to 627 15 to 388   tiling clone,   374/396
(94 %)
6 diff
(98.5 %id)
N39808 melanocyte .f-u 307 to 802 1 to 502 T34P     502/521
(96 %)
11 diff
(97.9 %id)
H50942 liver and spleen .f-u 322 to 691 1 to 374 T34P P58X W63X R78K G79R ...     374/420
(89 %)
10 diff
(97.7 %id)
CB129573 Liver .f-u 323 to 731 1 to 409 G15W     409/409
(100 %)
2 diff
(99.6 %id)
BX104767 whole brain .f-u 327 to 866 1 to 540 exact     540/540
(100 %)
1 diff
(99.9 %id)
F11256 brain, total brain .f-u 327 to 637 1 to 311       311/311
(100 %)
1 diff
(99.7 %id)
R17348 whole brain .f-u 328 to 728 1 to 407 G38A S39V P40L N68K K69*   Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 407/407
(100 %)
17 diff
(95.9 %id)
R53147 whole brain .f-u 328 to 758 1 to 436 G38A S39V P40L G41D Q42R ...     436/436
(100 %)
9 diff
(98.0 %id)
BM807343 brain, hippocampus .f-u 336 to 1235 15 to 928 exact     914/1179
(77 %)
40 diff
(96.7 %id)
BF087344 head_neck .f-u 365 to 653 290 to 5       286/290
(98 %)
0 diff
(100 %id)
FN050527 breast carcinoma .f-u 414 to 518 1 to 106       106/106
(100 %)
3 diff
(97.2 %id)
BY800193 eye .f-u 430 to 1045 13 to 628   tiling clone,   616/628
(98 %)
6 diff
(99.1 %id)
AA300004 uterus .f-u 531 to 927 1 to 401       401/403
(99 %)
15 diff
(96.3 %id)
BC009724 Pancreas, epithelioid carcinoma .f-u 609 to 1583 1 to 975   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 975/975
(100 %)
1 diff
(99.9 %id)
BE904065 epithelioid carcinoma, Pancreas .f-u 631 to 1423 1 to 787   available from MGC,   787/802
(98 %)
33 diff
(95.9 %id)
TI_149306197   .f-u 680 to 1592 984 to 86   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 899/938
(95 %)
26 diff
(97.3 %id)
TI_154016702   .f-u 749 to 1566 57 to 865     Submitted on the opposite strand 809/1013
(79 %)
20 diff
(98.1 %id)
AA034269 uterus .f-u 778 to 1039 1 to 264       264/264
(100 %)
8 diff
(97.0 %id)
H45103 breast .f-u 795 to 1254 1 to 476   fully sequenced,   476/476
(100 %)
26 diff
(94.6 %id)
R92528 liver and spleen .f-u 799 to 1220 1 to 436       436/438
(99 %)
23 diff
(94.8 %id)
FN057959 breast carcinoma .f-u 823 to 912 1 to 90       90/90
(100 %)
2 diff
(97.8 %id)
T95993 liver and spleen .f-u 829 to 1234 1 to 425       425/427
(99 %)
34 diff
(92.1 %id)
R79437 placenta .f-u 829 to 1179 1 to 355       355/359
(98 %)
10 diff
(97.3 %id)
TI_227714189   .f-u 834 to 1592 884 to 128   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 757/902
(83 %)
57 diff
(93.7 %id)
CK002990 brain/CNS, Human Brain - Cerebellar Cortex .f-u 843 to 1450 1 to 608       608/611
(99 %)
3 diff
(99.6 %id)
BM758810 myeloma .f-u 843 to 1388 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
AA044131 uterus .f-u 890 to 1241 1 to 357     Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 357/422
(84 %)
12 diff
(97.2 %id)
BQ003645 Chondrosarcoma, Left Pelvis .f-u 903 to 1583 702 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 684/684
(100 %)
5 diff
(99.3 %id)
AA402663.
matches multiple genes
ovarian tumor, ovary .f-u 905 to 1346 11 to 446     also hits gene SNRPD2 436/446
(97 %)
6 diff
(98.7 %id)
BU627782 Bone, Enchondroma cell line .f-u 909 to 1583 692 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 674/674
(100 %)
3 diff
(99.6 %id)
BU686262 lung, Primary Lung Epithelial Cells .f-u 911 to 1592 700 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 682/682
(100 %)
3 diff
(99.6 %id)
BQ005464 Chondrosarcoma, Left Pelvis .f-u 924 to 1583 682 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 664/664
(100 %)
4 diff
(99.4 %id)
BQ001612 lung, Metastatic Chondrosarcoma .f-u 932 to 1583 674 to 19   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 656/658
(99 %)
4 diff
(99.4 %id)
EC558563 Prostate .f-u 951 to 1047 1 to 96       96/96
(100 %)
1 diff
(99.0 %id)
AI810010 pooled .f-u 1004 to 1590 590 to 5       586/590
(99 %)
0 diff
(100 %id)
BE220676 carcinoid, lung .f-u 1011 to 1592 588 to 3       586/588
(99 %)
0 diff
(100 %id)
BE503846 carcinoid, lung .f-u 1055 to 1583 533 to 1       533/533
(100 %)
3 diff
(99.5 %id)
AA683500 uterus .f-u 1061 to 1583 527 to 1       527/527
(100 %)
5 diff
(99.1 %id)
BF514054   .f-u 1063 to 1583 542 to 18   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 525/525
(100 %)
3 diff
(99.5 %id)
DB358323 whole embryo, mainly head .f-u 1065 to 1583 517 to 1       517/536
(96 %)
7 diff
(98.7 %id)
AI654925 pooled germ cell tumors .f-u 1068 to 1584 517 to 1       517/517
(100 %)
1 diff
(99.9 %id)
AI433719 Kidney .f-u 1075 to 1592 536 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 518/518
(100 %)
1 diff
(99.9 %id)
BE326239 carcinoid, lung .f-u 1084 to 1592 516 to 4       513/516
(99 %)
0 diff
(100 %id)
N20970 melanocyte .f-u 1098 to 1583 493 to 1       493/495
(99 %)
11 diff
(97.8 %id)
AI825983 Kidney, renal cell tumor .f-u 1102 to 1583 499 to 17   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 483/483
(100 %)
4 diff
(99.2 %id)
BF448302 carcinoid, lung .f-u 1109 to 1583 490 to 16   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 475/475
(100 %)
4 diff
(99.2 %id)
BU726574 eye, Retina Foveal and Macular .f-u 1113 to 1582 489 to 20   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 470/470
(100 %)
0 diff
(100 %id)
AI304942 carcinoid, lung .f-u 1121 to 1592 479 to 4       476/479
(99 %)
0 diff
(100 %id)
DB541114 hippocampus .f-u 1125 to 1588 1 to 464     Submitted on the opposite strand 464/466
(99 %)
2 diff
(99.6 %id)
AW474445 serous papillary carcinoma, high grade, 2pooled tumors, uterus .f-u 1137 to 1587 451 to 1       451/451
(100 %)
2 diff
(99.6 %id)
AA974817 carcinoid, lung .f-u 1142 to 1451 311 to 2       310/311
(99 %)
0 diff
(100 %id)
BE463438 Kidney .f-u 1155 to 1583 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
BF108623 carcinoid, lung .f-u 1155 to 1590 439 to 4       436/439
(99 %)
0 diff
(100 %id)
N26657 melanocyte .f-u 1157 to 1592 440 to 1       440/440
(100 %)
5 diff
(98.9 %id)
AI032422 breast .f-u 1161 to 1591 431 to 1       431/431
(100 %)
2 diff
(99.6 %id)
AI283020 placenta .f-u 1163 to 1583 435 to 15   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 421/421
(100 %)
1 diff
(99.8 %id)
AA628635   .f-u 1175 to 1583 426 to 18   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 409/409
(100 %)
1 diff
(99.8 %id)
AW590302 pooled germ cell tumors .f-u 1190 to 1586 397 to 1       397/397
(100 %)
2 diff
(99.5 %id)
AA676443 liver and spleen .f-u 1196 to 1583 388 to 1       388/388
(100 %)
1 diff
(99.8 %id)
AA032079.
matches multiple genes
uterus .f-u 1197 to 1584 390 to 1     also hits gene SSBP4 390/390
(100 %)
6 diff
(98.5 %id)
AI559491 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .f-u 1199 to 1590 398 to 7       392/398
(98 %)
0 diff
(100 %id)
AI253184 Kidney .f-u 1217 to 1592 385 to 10       376/385
(97 %)
0 diff
(100 %id)
N23999 melanocyte .f-u 1220 to 1583 378 to 13   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 366/367
(99 %)
5 diff
(98.7 %id)
AA985265 Spleen .f-u 1220 to 1592 373 to 1       373/373
(100 %)
1 diff
(99.8 %id)
AI274497 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .f-u 1223 to 1583 377 to 17   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 361/361
(100 %)
2 diff
(99.5 %id)
H45413 breast .f-u 1224 to 1573 358 to 1   fully sequenced,   358/358
(100 %)
6 diff
(98.4 %id)
R53060 whole brain .f-u 1236 to 1581 351 to 1       351/428
(82 %)
7 diff
(98.4 %id)
AI206763 lung .f-u 1260 to 1584 325 to 1       325/328
(99 %)
1 diff
(99.7 %id)
AA402610.
matches multiple genes
ovarian tumor, ovary .f-u 1266 to 1583 329 to 12   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base), also hits gene BTAF1 318/318
(100 %)
3 diff
(99.1 %id)
R42696 whole brain .f-u 1272 to 1583 331 to 14   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 318/323
(98 %)
8 diff
(97.6 %id)
R79438 placenta .f-u 1272 to 1569 304 to 1       304/304
(100 %)
8 diff
(97.4 %id)
CK904631 Islets of Langerhans, Pancreas .f-u 1272 to 1583 7 to 318   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 312/318
(98 %)
6 diff
(98.2 %id)
AW439105 serous papillary carcinoma, high grade, 2pooled tumors, uterus .f-u 1278 to 1590 316 to 4       313/316
(99 %)
0 diff
(100 %id)
AA948301 pooled germ cell tumors .f-u 1280 to 1584 305 to 1       305/305
(100 %)
1 diff
(99.7 %id)
BM068794 Islets of Langerhans, Pancreas .f-u 1282 to 1583 1 to 302   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 302/302
(100 %)
1 diff
(99.7 %id)
AA300005 uterus .f-u 1286 to 1588 307 to 2       306/308
(99 %)
0 diff
(100 %id)
AA699380 liver and spleen .f-u 1296 to 1592 298 to 2       297/298
(99 %)
0 diff
(100 %id)
AI473883 Kidney .f-u 1302 to 1585 284 to 1       284/284
(100 %)
2 diff
(99.3 %id)
F08919 brain, total brain .f-u 1324 to 1583 260 to 1       260/260
(100 %)
2 diff
(99.3 %id)
T95893 liver and spleen .f-u 1338 to 1568 232 to 2       231/232
(99 %)
0 diff
(100 %id)
AA044305 uterus .f-u 1346 to 1590 258 to 14   AAA Possibly primed on the genome, locally A rich (19/20 A in genome downstream of last aligned base) 245/245
(100 %)
1 diff
(99.6 %id)
AA724669 parathyroid gland, parathyroid tumor .f-u 1420 to 1592 180 to 8       173/180
(96 %)
0 diff
(100 %id)
BX644402   .g-u 1 to 504 504 to 1 exact tiling clone, Submitted on the opposite strand 504/504
(100 %)
0 diff
(100 %id)
CV427190 lung_tumor .g-u 124 to 450 8 to 334 V2D G10E F29L F31V S32C     327/334
(97 %)
6 diff
(98.3 %id)
BE717637 head_neck .g-u 127 to 590 488 to 27 exact     462/497
(92 %)
0 diff
(100 %id)
BE717640 head_neck .g-u 127 to 590 471 to 9 exact     463/480
(96 %)
0 diff
(100 %id)
BE717641 head_neck .g-u 127 to 590 489 to 27 exact     463/498
(92 %)
0 diff
(100 %id)
BE717648 head_neck .g-u 127 to 590 477 to 15 D19G     463/560
(82 %)
0 diff
(100 %id)
BE717667 head_neck .g-u 127 to 590 472 to 10 exact     463/481
(96 %)
0 diff
(100 %id)
BE717674 head_neck .g-u 127 to 599 483 to 12 exact     472/492
(95 %)
7 diff
(98.6 %id)
BE717677 head_neck .g-u 127 to 590 472 to 10 exact     463/481
(96 %)
0 diff
(100 %id)
BE818403 breast_normal .g-u 127 to 579 10 to 462 exact     453/462
(98 %)
6 diff
(98.8 %id)
BE818405 breast_normal .g-u 127 to 590 473 to 10 exact tiling clone,   464/474
(97 %)
0 diff
(100 %id)
BE818406 breast_normal .g-u 127 to 590 473 to 10 T20P     464/477
(97 %)
0 diff
(100 %id)
BE818408 breast_normal .g-u 127 to 590 473 to 10 exact     464/480
(96 %)
0 diff
(100 %id)
BE818409 breast_normal .g-u 127 to 590 473 to 10 exact     464/474
(97 %)
0 diff
(100 %id)
BE818430 breast_normal .g-u 127 to 590 473 to 10 exact     464/477
(97 %)
0 diff
(100 %id)
BE818434 breast_normal .g-u 127 to 583 459 to 2 V2A     458/475
(96 %)
0 diff
(100 %id)
BE830109 lung_tumor .g-u 127 to 590 16 to 479 exact     464/483
(96 %)
11 diff
(97.8 %id)
BE830164 lung_tumor .g-u 127 to 590 16 to 479 exact     464/483
(96 %)
11 diff
(97.8 %id)
CV423838 breast_normal .g-u 127 to 586 476 to 17 S32T   Submitted on the opposite strand 460/496
(92 %)
0 diff
(100 %id)
CV423841 breast_normal .g-u 127 to 590 479 to 23 Q15*   Submitted on the opposite strand 457/489
(93 %)
0 diff
(100 %id)
CV427194 lung_tumor .g-u 127 to 485 13 to 371 exact     359/371
(96 %)
6 diff
(98.4 %id)
BF889203 testis_normal .g-u 128 to 419 297 to 6 exact   Submitted on the opposite strand 292/312
(93 %)
0 diff
(100 %id)
BE717670 head_neck .g-u 168 to 590 1 to 421 exact     421/430
(97 %)
6 diff
(98.7 %id)
BE818425 breast_normal .g-u 168 to 590 434 to 12 H6P D19A     423/434
(97 %)
0 diff
(100 %id)
BE818413 breast_normal .g-u 231 to 590 369 to 10 exact     360/369
(97 %)
0 diff
(100 %id)
BE830301 lung_tumor .g-u 253 to 576 324 to 1 T20A     324/324
(100 %)
9 diff
(97.3 %id)
BE818427 breast_normal .g-u 256 to 590 335 to 2 T13L P14H Q15R I16L K17S ...     334/335
(99 %)
0 diff
(100 %id)
BE717666 head_neck .g-u 333 to 594 279 to 15       265/279
(94 %)
0 diff
(100 %id)
BE770317 prostate_tumor .h-u 1 to 362 3 to 363 I2S F9L M22C L23W V24C ...     363/363
(100 %)
21 diff
(94.3 %id)
BE770333 prostate_tumor .h-u 1 to 481 18 to 499 I2S F9L tiling clone,   484/501
(96 %)
10 diff
(98.1 %id)
BE770345 prostate_tumor .h-u 1 to 471 492 to 18 I2S F9L R10H L12* tiling clone,   473/493
(95 %)
0 diff
(100 %id)
BQ373587 prostate_tumor .h-u 1 to 416 449 to 38 I2S T33P T57A tiling clone,   410/450
(91 %)
0 diff
(100 %id)
AA635571 normal prostate, Prostate .i 1 to 406 406 to 1 exact tiling clone,   406/406
(100 %)
7 diff
(98.3 %id)
AA635562 normal prostate, Prostate .i 2 to 406 405 to 1 exact tiling clone,   405/406
(99 %)
7 diff
(98.3 %id)
CV374979 bladder_tumor .j-u 1 to 169 1 to 170   tiling clone,   170/170
(100 %)
7 diff
(95.9 %id)
CV374974 bladder_tumor .j-u 9 to 393 20 to 405 Q2C V3N Q4G W5H A6R ... tiling clone,   386/405
(95 %)
35 diff
(91.4 %id)
AV725515 hypothalamus Gene ATRN, variant not shown       AAA This clone was ignored    
BM834355 stomach Gene ATRN, variant not shown         Suspected internal deletion, this clone was ignored    
DB093274 testis Gene ATRN, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB280337 uterus Gene ATRN, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u, .h-u, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC