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Gene ATPAF2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
291 supporting clones for gene ATPAF2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BF684946 leiomyosarcoma cell line, uterus .a 1 to 611 1 to 619   tiling clone,   619/1254
(49 %)
19 diff
(98.5 %id)
DB456669 testis .a 4 to 497 1 to 494       494/494
(100 %)
1 diff
(99.8 %id)
CV813200 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 15 to 771 1 to 757       757/757
(100 %)
2 diff
(99.8 %id)
BQ057465 lymph, lymphoma, cell line .a 17 to 916 1 to 903       903/1019
(88 %)
8 diff
(99.3 %id)
CD358752 testis .a 17 to 688 30 to 707       678/965
(70 %)
26 diff
(97.4 %id)
DA835367 placenta .a 17 to 494 2 to 480   capped   479/479
(100 %)
1 diff
(99.8 %id)
BQ879758 ductal carcinoma, cell line, Pancreas .a 21 to 877 1 to 865       865/900
(96 %)
12 diff
(98.7 %id)
BP193040 brain .a 26 to 608 1 to 581       581/583
(99 %)
6 diff
(99.0 %id)
BG754100 B-cells, primary B-cells from tonsils (cell line) .a 28 to 904 1 to 877       877/877
(100 %)
4 diff
(99.6 %id)
DT219743 brain .a 29 to 751 1 to 723       723/723
(100 %)
1 diff
(99.9 %id)
BP379495 uterus .a 31 to 611 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
AK290257 colon .a 32 to 1412 1 to 1381 exact     1381/1381
(100 %)
1 diff
(100.0 %id)
CB129374 cervix, Uterine .a 32 to 615 1 to 584       584/586
(99 %)
6 diff
(99.0 %id)
DB443689 testis .a 32 to 485 1 to 453       453/453
(100 %)
6 diff
(98.7 %id)
CB114893 Liver .a 32 to 593 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
BP298928   .a 32 to 608 1 to 576       576/584
(98 %)
10 diff
(98.3 %id)
BP300507   .a 32 to 613 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BP331040 rectum .a 32 to 619 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
BM785992 Ascites, stomach .a 32 to 628 1 to 597       597/597
(100 %)
1 diff
(99.9 %id)
BM753490 stomach .a 32 to 546 1 to 515       515/515
(100 %)
7 diff
(98.7 %id)
DA963003 stomach .a 32 to 608 2 to 579   capped   578/578
(100 %)
6 diff
(99.0 %id)
DA008246 adipose .a 33 to 600 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA015964 adrenal gland .a 33 to 599 2 to 570   capped   569/569
(100 %)
4 diff
(99.3 %id)
DA086907 cerebellum .a 33 to 548 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DA143239 alzheimer cortex .a 33 to 593 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA166086 amygdala .a 33 to 601 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA203538 brain .a 33 to 615 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA426777 colon .a 33 to 605 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA474655   .a 33 to 594 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA484753 brain .a 33 to 548 2 to 519   capped   518/518
(100 %)
2 diff
(99.7 %id)
DA539380 Kidney .a 33 to 618 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA620014   .a 33 to 628 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA839186 placenta .a 33 to 592 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA879153 Prostate .a 33 to 602 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA900633 skeletal muscle .a 33 to 548 2 to 517   capped   516/516
(100 %)
0 diff
(100 %id)
DB133694 thymus .a 33 to 488 2 to 457   capped   456/456
(100 %)
0 diff
(100 %id)
BC004114 Ovary, adenocarcinoma .a 34 to 1340 1 to 1307 exact tiling clone, available from MGC, AAA   1307/1307
(100 %)
0 diff
(100 %id)
NM_145691.3   .a 34 to 1585 1 to 1552 exact RefSeq,   1552/1552
(100 %)
0 diff
(100 %id)
BM701779 eye, optic nerve .a 35 to 636 1 to 602       602/602
(100 %)
1 diff
(99.9 %id)
BQ428245 leiomyosarcoma, uterus .a 36 to 977 1 to 948       948/949
(99 %)
13 diff
(98.7 %id)
BP329752 rectum .a 36 to 615 1 to 580       580/582
(99 %)
10 diff
(98.3 %id)
CF140238 CNCAP(3)T-225 cell line, Prostate .a 37 to 588 1 to 552       552/552
(100 %)
3 diff
(99.5 %id)
BQ949579 large cell carcinoma, lung .a 37 to 894 1 to 864       864/865
(99 %)
6 diff
(99.4 %id)
BP325369 Pancreas .a 38 to 621 1 to 585       585/585
(100 %)
6 diff
(99.0 %id)
DA908417   .a 38 to 612 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
AF052185 brain .a 43 to 1340 1 to 1298 exact AAA   1298/1298
(100 %)
0 diff
(100 %id)
AY203943   .a 43 to 1340 1 to 1297 I88L A89Q V90W A91L T92L ... AAA   1297/1297
(100 %)
3 diff
(99.8 %id)
F06165 brain, total brain .a 43 to 250 1 to 208       208/208
(100 %)
1 diff
(99.6 %id)
BU153720 eye, retinoblastoma .a 43 to 916 65 to 949       881/952
(92 %)
28 diff
(97.1 %id)
TI_154170599   .a 43 to 609 79 to 648       570/1035
(55 %)
7 diff
(99.4 %id)
T80135 whole brain .a 44 to 455 1 to 416       416/463
(89 %)
12 diff
(97.5 %id)
H16320 whole brain .a 44 to 457 1 to 419       419/498
(84 %)
16 diff
(96.8 %id)
BI754107 brain .a 44 to 918 1 to 877       877/880
(99 %)
16 diff
(98.2 %id)
BI905980 leukocyte .a 44 to 916 1 to 876       876/890
(98 %)
9 diff
(99.0 %id)
TI_57219078   .a 44 to 918 68 to 944       877/947
(92 %)
21 diff
(97.8 %id)
TI_57231877   .a 44 to 916 32 to 907       876/921
(95 %)
15 diff
(98.4 %id)
BM794894 Ascites, stomach .a 44 to 705 1 to 661       661/661
(100 %)
4 diff
(99.4 %id)
BI756145 brain .a 45 to 740 1 to 697       697/702
(99 %)
4 diff
(99.5 %id)
BU160438 melanotic melanoma, skin .a 45 to 728 1 to 689       689/959
(71 %)
11 diff
(98.9 %id)
CX164163 human embryonic stem cells differentiated toan early endodermal cell type .a 45 to 879 1 to 834       834/834
(100 %)
1 diff
(99.9 %id)
TI_57220974   .a 45 to 740 68 to 764       697/769
(90 %)
9 diff
(98.9 %id)
AW963050   .a 46 to 723 1 to 677       677/679
(99 %)
9 diff
(98.7 %id)
CX752505 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 46 to 725 1 to 679     Submitted on the opposite strand 679/679
(100 %)
3 diff
(99.6 %id)
CX784134 human embryonic stem cells .a 48 to 626 1 to 579       579/579
(100 %)
0 diff
(100 %id)
BM853633 Ascites, stomach .a 48 to 409 1 to 362       362/362
(100 %)
0 diff
(100 %id)
BE742195 adenocarcinoma cell line, ovary .a 52 to 887 1 to 836       836/923
(90 %)
19 diff
(98.0 %id)
BE746966 adenocarcinoma cell line, ovary .a 52 to 852 1 to 798       798/801
(99 %)
40 diff
(95.1 %id)
BE740955 adenocarcinoma cell line, ovary .a 53 to 739 1 to 689       689/692
(99 %)
6 diff
(99.2 %id)
BX401318   .a 55 to 833 1 to 779   fully sequenced,   779/779
(100 %)
0 diff
(100 %id)
BM045156 carcinoma, cell line, Prostate .a 56 to 732 1 to 676       676/678
(99 %)
5 diff
(99.3 %id)
BM908388 astrocytoma grade IV, cell line, brain .a 58 to 510 1 to 453       453/1301
(34 %)
3 diff
(99.8 %id)
BM008779 adenocarcinoma, Pancreas .a 72 to 684 1 to 615       615/674
(91 %)
4 diff
(99.5 %id)
TI_59386493   .a 72 to 684 58 to 672       615/674
(91 %)
4 diff
(99.5 %id)
BM468133 leiomyosarcoma, uterus .a 81 to 1033 1 to 966       966/1053
(91 %)
7 diff
(99.4 %id)
BG827167 muscle, rhabdomyosarcoma .a 84 to 705 1 to 622       622/622
(100 %)
1 diff
(99.9 %id)
BC032126 Muscle, rhabdomyosarcoma .a 85 to 1340 1 to 1256 exact available from MGC, AAA   1256/1256
(100 %)
1 diff
(100.0 %id)
CR991604 T-Lymphocytes .a 125 to 574 1 to 453       453/453
(100 %)
4 diff
(99.2 %id)
EL735942 mixed .a 187 to 817 1 to 631       631/631
(100 %)
1 diff
(99.9 %id)
TI_1948218073   .a 187 to 350 136 to 299   fully sequenced,   164/192
(85 %)
6 diff
(96.9 %id)
TI_1948218241   .a 187 to 350 136 to 299   fully sequenced,   164/192
(85 %)
6 diff
(96.9 %id)
TI_1948218415   .a 187 to 1056 141 to 1014 A264G R265P T266H A267R A268R ... fully sequenced,   874/1014
(86 %)
24 diff
(97.7 %id)
TI_1948218578   .a 187 to 350 138 to 301   fully sequenced,   164/192
(85 %)
6 diff
(96.9 %id)
TI_1948224545   .a 187 to 1055 121 to 989       869/1361
(63 %)
38 diff
(97.3 %id)
TI_1948224546   .a 187 to 785 123 to 722       600/1215
(49 %)
23 diff
(98.2 %id)
TI_1948225181   .a 187 to 1052 125 to 995       871/1386
(62 %)
30 diff
(97.9 %id)
TI_1948225182   .a 187 to 920 126 to 865   AAA   740/1152
(64 %)
17 diff
(98.6 %id)
TI_1948225499   .a 187 to 1053 126 to 993       868/1474
(58 %)
14 diff
(99.1 %id)
TI_1948225500   .a 187 to 868 126 to 814       689/1274
(54 %)
14 diff
(99.0 %id)
TI_1948225502   .a 187 to 1055 996 to 128       869/1336
(65 %)
11 diff
(99.2 %id)
TI_1948224548   .a 189 to 1055 1001 to 131       871/1277
(68 %)
13 diff
(99.0 %id)
T82001 liver and spleen .a 286 to 654 1 to 376       374/377
(99 %)
15 diff
(96.1 %id)
TI_1948218074   .a 316 to 1055 865 to 124   fully sequenced,   742/865
(85 %)
4 diff
(99.6 %id)
TI_1948218242   .a 316 to 1055 863 to 121   fully sequenced,   743/863
(86 %)
11 diff
(98.8 %id)
TI_1948218579   .a 316 to 1055 866 to 125   fully sequenced,   742/866
(85 %)
7 diff
(99.2 %id)
TI_1948225501   .a 320 to 1055 866 to 127       740/1358
(54 %)
17 diff
(98.8 %id)
BQ434021 melanotic melanoma, skin .a 392 to 1207 11 to 832       822/889
(92 %)
18 diff
(98.0 %id)
TI_1948224547   .a 392 to 1055 779 to 113       667/1338
(49 %)
24 diff
(98.3 %id)
BQ358783 head_neck .a 414 to 555 1 to 141       141/148
(95 %)
8 diff
(94.6 %id)
BX395458 Neuroblastoma Cot 50-normalized .a 443 to 1343 1 to 900       900/900
(100 %)
2 diff
(99.8 %id)
N58616 liver and spleen .a 450 to 688 16 to 254       239/254
(94 %)
3 diff
(98.9 %id)
TI_57152892   .a 540 to 1108 59 to 628       570/628
(90 %)
7 diff
(98.9 %id)
CF140744 CNCAP(3)T-225 cell line, Prostate .a 541 to 807 8 to 274       267/274
(97 %)
9 diff
(96.8 %id)
BI765003 pooled colon, kidney, stomach .a 547 to 1108 1 to 563       563/563
(100 %)
2 diff
(99.7 %id)
AA319321 adrenal gland .a 549 to 869 1 to 322       322/322
(100 %)
2 diff
(99.4 %id)
AA336540 endometrium .a 549 to 824 1 to 282       282/283
(99 %)
14 diff
(95.1 %id)
AA337072 endometrium .a 549 to 851 1 to 304       304/308
(98 %)
5 diff
(98.4 %id)
AW952601   .a 550 to 883 1 to 334       334/335
(99 %)
1 diff
(99.8 %id)
R69221 placenta .a 551 to 918 1 to 372       372/420
(88 %)
6 diff
(98.6 %id)
TI_1948218416   .a 578 to 1055 602 to 125   fully sequenced,   478/602
(79 %)
1 diff
(99.9 %id)
BQ691561 ductal carcinoma, cell line, Pancreas .a 615 to 1340 738 to 14   AAA Submitted on the opposite strand 725/854
(84 %)
9 diff
(99.0 %id)
BQ690271 ductal carcinoma, cell line, Pancreas .a 615 to 1340 741 to 14   AAA Submitted on the opposite strand 728/883
(82 %)
10 diff
(98.9 %id)
BQ689395 ductal carcinoma, cell line, Pancreas .a 615 to 1340 739 to 14   AAA Submitted on the opposite strand 726/878
(82 %)
8 diff
(99.1 %id)
BU624156 cell lines, Enchondroma .a 615 to 1339 743 to 19   AAA   725/727
(99 %)
6 diff
(99.2 %id)
TI_149294371   .a 617 to 1340 799 to 79   AAA   721/721
(100 %)
5 diff
(99.4 %id)
BU616506 Bone, Subchondral Bone .a 619 to 1339 739 to 19   AAA   721/721
(100 %)
0 diff
(100 %id)
TI_149286549   .a 630 to 1340 792 to 85   AAA   708/709
(99 %)
5 diff
(99.3 %id)
BU728990 eye, optic nerve .a 649 to 1339 708 to 19   AAA   690/690
(100 %)
1 diff
(99.9 %id)
BM972105 lung .a 651 to 1340 706 to 19   AAA   688/688
(100 %)
4 diff
(99.5 %id)
BU683149 lung .a 661 to 1340 696 to 19   AAA   678/678
(100 %)
2 diff
(99.8 %id)
CU450694 epidermis .a 674 to 1307 648 to 16     Submitted on the opposite strand 633/648
(97 %)
2 diff
(99.7 %id)
BF930640 nervous_tumor .a 684 to 1122 1 to 436       435/437
(99 %)
10 diff
(97.8 %id)
CA313434 Human Lung Epithelial cells, lung .a 688 to 1340 671 to 19   AAA   649/659
(98 %)
2 diff
(99.7 %id)
BM673811 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 692 to 1340 666 to 19   AAA   648/648
(100 %)
2 diff
(99.7 %id)
CA309423 Alveolar Macrophage, lung .a 692 to 1340 667 to 19   AAA   649/649
(100 %)
2 diff
(99.7 %id)
AW118608 pooled .a 694 to 1342 648 to 1       648/648
(100 %)
2 diff
(99.7 %id)
CA310297 Alveolar Macrophage, lung .a 699 to 1341 663 to 16   AAA   644/648
(99 %)
4 diff
(99.4 %id)
BF930205 nervous_tumor .a 703 to 1185 1 to 483       483/483
(100 %)
2 diff
(99.6 %id)
CB160056 Liver .a 703 to 1183 1 to 481       481/481
(100 %)
5 diff
(99.0 %id)
CA439683 lung, Metastatic Chondrosarcoma .a 727 to 1340 631 to 19   AAA   613/614
(99 %)
4 diff
(99.4 %id)
BQ447703 Knee, Osteoarthritic Cartilage .a 729 to 1340 629 to 19   AAA   611/611
(100 %)
2 diff
(99.7 %id)
CA424592 cell lines, Chondrosarcoma .a 730 to 1340 629 to 19   AAA   611/611
(100 %)
2 diff
(99.7 %id)
BM725851 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 733 to 876 1 to 144   fully sequenced,   144/144
(100 %)
0 diff
(100 %id)
CN485316 eye .a 744 to 1343 1 to 600       600/604
(99 %)
1 diff
(99.9 %id)
AA876014 germinal center B cell .a 760 to 1340 610 to 32   AAA   579/579
(100 %)
5 diff
(99.2 %id)
BX384590   .a 772 to 1539 769 to 1   fully sequenced,   769/769
(100 %)
4 diff
(99.5 %id)
TI_149295157   .a 772 to 1585 897 to 88   AAA   810/936
(86 %)
11 diff
(98.9 %id)
BU624876 cell lines, Enchondroma .a 788 to 1340 574 to 19   AAA   552/556
(99 %)
3 diff
(99.5 %id)
AW082666 pooled .a 793 to 1340 569 to 21   AAA   549/549
(100 %)
10 diff
(98.2 %id)
TI_157613071   .a 801 to 1340 641 to 102   AAA   540/542
(99 %)
7 diff
(98.8 %id)
AA317996 retina .a 803 to 1093 1 to 291       291/291
(100 %)
1 diff
(99.7 %id)
BE463638 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 803 to 1339 540 to 3       538/540
(99 %)
3 diff
(99.5 %id)
AI888309 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 824 to 1341 518 to 1       518/518
(100 %)
0 diff
(100 %id)
AW316608 brain, three pooled meningiomas .a 826 to 1339 515 to 2       514/515
(99 %)
3 diff
(99.5 %id)
CN277907 embryonic stem cells, DMSO-treated H9 cellline .a 838 to 1328 1 to 491       491/491
(100 %)
0 diff
(100 %id)
BM677968 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 846 to 1340 513 to 19   fully sequenced, AAA   495/495
(100 %)
0 diff
(100 %id)
EC458739 Prostate .a 852 to 937 1 to 87       87/87
(100 %)
4 diff
(95.5 %id)
DB522090 testis .a 852 to 1340 1 to 489     Submitted on the opposite strand 489/489
(100 %)
1 diff
(99.8 %id)
EC557611 Prostate .a 853 to 937 1 to 85       85/85
(100 %)
0 diff
(100 %id)
EC464971 Prostate .a 854 to 937 1 to 83       83/83
(100 %)
3 diff
(96.4 %id)
BM985276 lung .a 870 to 1585 733 to 16   AAA   718/718
(100 %)
3 diff
(99.6 %id)
AA854714 parathyroid gland, parathyroid tumor .a 887 to 1340 479 to 26   AAA   454/454
(100 %)
3 diff
(99.4 %id)
TI_1948225184   .a 899 to 1055 285 to 129       157/184
(85 %)
0 diff
(100 %id)
AA825965 germinal center B cell .a 904 to 1343 444 to 6       439/444
(98 %)
0 diff
(100 %id)
AA699779 liver and spleen .a 906 to 1340 432 to 1       432/432
(100 %)
8 diff
(98.2 %id)
N53215 liver and spleen .a 913 to 1342 443 to 1       443/459
(96 %)
20 diff
(95.7 %id)
AA037872 heart .a 914 to 1176 1 to 264       264/264
(100 %)
9 diff
(96.6 %id)
AA835875 germinal center B cell .a 916 to 1343 430 to 6       425/433
(98 %)
0 diff
(100 %id)
AI306485 carcinoid, lung .a 916 to 1343 430 to 3       428/435
(98 %)
0 diff
(100 %id)
DB508657 testis .a 919 to 1340 1 to 422     Submitted on the opposite strand 422/422
(100 %)
0 diff
(100 %id)
H16298 whole brain .a 921 to 1343 434 to 3       432/434
(99 %)
0 diff
(100 %id)
AI082359 B-cell, chronic lymphotic leukemia .a 927 to 1343 417 to 1       417/417
(100 %)
0 diff
(100 %id)
AA811504 germinal center B cell .a 930 to 1259 330 to 1       330/330
(100 %)
2 diff
(99.4 %id)
BG231339 normal head/neck tissue .a 944 to 1339 459 to 64   AAA   396/398
(99 %)
3 diff
(99.3 %id)
AA598602   .a 946 to 1343 397 to 1       397/397
(100 %)
3 diff
(99.3 %id)
CF527980 placenta .a 975 to 1340 383 to 18   AAA   366/366
(100 %)
0 diff
(100 %id)
CD368958 Alveolar Macrophage, lung .a 983 to 1340 376 to 19   AAA   358/358
(100 %)
3 diff
(99.2 %id)
AA744492 germinal center B cell .a 987 to 1340 396 to 42   AAA   355/355
(100 %)
1 diff
(99.8 %id)
AI683531 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 987 to 1341 394 to 39   AAA   356/356
(100 %)
25 diff
(93.0 %id)
DB522289 testis .a 988 to 1337 1 to 350     Submitted on the opposite strand 350/350
(100 %)
10 diff
(97.2 %id)
AA293210 ovarian tumor, ovary .a 988 to 1343 357 to 1       357/357
(100 %)
1 diff
(99.8 %id)
H89603 liver and spleen .a 990 to 1330 347 to 1       347/347
(100 %)
7 diff
(98.0 %id)
R92807 liver and spleen .a 991 to 1333 350 to 1       350/350
(100 %)
9 diff
(97.5 %id)
AA281720 germinal center B cell .a 991 to 1340 370 to 21   AAA   350/350
(100 %)
1 diff
(99.8 %id)
AA725019 pooled .a 993 to 1343 357 to 6       352/357
(98 %)
0 diff
(100 %id)
AA912112 pooled .a 993 to 1343 356 to 7       350/356
(98 %)
0 diff
(100 %id)
EC456649 Prostate .a 997 to 1074 17 to 94       78/94
(82 %)
9 diff
(90.5 %id)
AI208992   .a 1002 to 1343 342 to 1       342/342
(100 %)
0 diff
(100 %id)
R86002 breast .a 1007 to 1397 1 to 398       398/483
(82 %)
11 diff
(97.8 %id)
BX330581 Placenta Cot 25-normalized .a 1025 to 1337 313 to 1       313/313
(100 %)
2 diff
(99.4 %id)
BX381733 Placenta Cot 25-normalized .a 1025 to 1343 1 to 319       319/319
(100 %)
0 diff
(100 %id)
R39358 whole brain .a 1025 to 1340 331 to 13   AAA   319/328
(97 %)
12 diff
(96.4 %id)
AA178850 muscle, skeletal muscle .a 1029 to 1437 1 to 404       404/404
(100 %)
12 diff
(97.1 %id)
AW194806 Kidney .a 1037 to 1358 323 to 1       323/323
(100 %)
2 diff
(99.4 %id)
BX381732 Placenta Cot 25-normalized .a 1039 to 1307 269 to 1       269/279
(96 %)
13 diff
(95.4 %id)
BI765202 pooled colon, kidney, stomach .a 1058 to 1340 1 to 284   AAA   284/284
(100 %)
1 diff
(99.7 %id)
BE702512 nervous_normal .a 1065 to 1246 200 to 22       179/200
(89 %)
0 diff
(100 %id)
Z39081 brain, total brain .a 1068 to 1340 274 to 1       274/274
(100 %)
2 diff
(99.3 %id)
AI572516 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1078 to 1343 272 to 6       267/272
(98 %)
0 diff
(100 %id)
AA887304 Kidney .a 1083 to 1339 257 to 2       256/257
(99 %)
0 diff
(100 %id)
AI208133   .a 1116 to 1340 241 to 17   AAA   225/225
(100 %)
1 diff
(99.6 %id)
AI857387 anaplastic oligodendroglioma, brain .a 1118 to 1582 465 to 1   tiling clone,   465/465
(100 %)
1 diff
(99.8 %id)
DB517549 testis .a 1123 to 1582 1 to 460     Submitted on the opposite strand 460/460
(100 %)
1 diff
(99.8 %id)
AA937032 Kidney .a 1130 to 1339 227 to 18   AAA   210/210
(100 %)
5 diff
(97.7 %id)
AI002320 carcinoid, lung .a 1130 to 1339 210 to 1       210/210
(100 %)
5 diff
(97.7 %id)
AA568213 colon, colon tumor RER+ .a 1131 to 1340 225 to 15   AAA   211/211
(100 %)
3 diff
(98.6 %id)
AA176425 muscle, skeletal muscle .a 1138 to 1584 451 to 1       451/451
(100 %)
8 diff
(98.3 %id)
AA760883 germinal center B cell .a 1166 to 1595 437 to 8   tiling clone,   430/437
(98 %)
0 diff
(100 %id)
AA884604 pooled .a 1188 to 1582 390 to 1       390/396
(98 %)
8 diff
(98.0 %id)
AA292553 ovarian tumor, ovary .a 1201 to 1331 1 to 128   fully sequenced,   128/128
(100 %)
3 diff
(97.7 %id)
AA912650 pooled .a 1216 to 1339 141 to 19   AAA   123/123
(100 %)
1 diff
(99.2 %id)
AA452267   .a 1251 to 1582 342 to 11   AAA   332/332
(100 %)
2 diff
(99.4 %id)
AA235550 ovarian tumor, ovary .a 1268 to 1340 73 to 1   fully sequenced,   73/73
(100 %)
0 diff
(100 %id)
AW294669   .a 1315 to 1582 281 to 14   AAA   268/293
(91 %)
8 diff
(97.3 %id)
BG825892 muscle, rhabdomyosarcoma .b 1 to 685 1 to 689   tiling clone,   689/689
(100 %)
5 diff
(99.3 %id)
AA464645 ovarian tumor, ovary .b 635 to 1073 1 to 436   tiling clone,   436/436
(100 %)
7 diff
(98.4 %id)
AA464545 ovarian tumor, ovary .b 1210 to 1648 437 to 1   tiling clone,   437/437
(100 %)
9 diff
(98.0 %id)
Z43967 brain, total brain .c 1 to 260 1 to 260   tiling clone,   260/260
(100 %)
1 diff
(99.7 %id)
CR596170 HeLa cells Cot 25-normalized .c 15 to 1504 1 to 1490 exact tiling clone,   1490/1490
(100 %)
0 diff
(100 %id)
TI_151775744   .c 53 to 769 87 to 803       717/1075
(66 %)
27 diff
(97.5 %id)
EL735247 mixed .c 147 to 766 1 to 620       620/673
(92 %)
7 diff
(99.0 %id)
CR600553 Neuroblastoma Cot 50-normalized .c 403 to 1328 1 to 926       926/926
(100 %)
0 diff
(100 %id)
Z40026 brain, total brain .c 1333 to 1546 214 to 1   tiling clone,   214/214
(100 %)
2 diff
(99.1 %id)
CR991893 T-Lymphocytes .d 1 to 748 1 to 749 A30V V130G E131G Q132A A133G ... tiling clone,   749/750
(99 %)
3 diff
(99.6 %id)
BF870911 lung_tumor .e 1 to 458 1 to 458   tiling clone,   458/458
(100 %)
2 diff
(99.6 %id)
BU853982 testis .e 62 to 796 1 to 737 A21P M70L tiling clone,   737/737
(100 %)
11 diff
(98.6 %id)
CU451579 epidermis .e 246 to 681 447 to 13     Submitted on the opposite strand 435/448
(97 %)
8 diff
(98.3 %id)
CU453498 epidermis .e 246 to 681 447 to 13     Submitted on the opposite strand 435/448
(97 %)
7 diff
(98.5 %id)
DA951740 Spleen .f 1 to 550 2 to 551 exact tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
AF070584 brain .g 1 to 1737 1 to 1737 exact tiling clone, AAA   1737/1737
(100 %)
0 diff
(100 %id)
H11961 whole brain .g 3 to 420 1 to 421 H13I L14F R16D S18R G19A ...     418/483
(86 %)
16 diff
(96.7 %id)
T80014 whole brain .g 67 to 409 1 to 351       348/351
(99 %)
21 diff
(94.1 %id)
AA442489   .g 831 to 1351 1 to 519   fully sequenced,   519/519
(100 %)
3 diff
(99.5 %id)
BG009987 placenta_normal .g 865 to 1282 1 to 418       418/418
(100 %)
23 diff
(94.5 %id)
BF114677 pooled .g 1203 to 1737 543 to 9       535/543
(98 %)
0 diff
(100 %id)
AA843506 parathyroid gland, parathyroid tumor .g 1238 to 1737 505 to 7       499/505
(98 %)
0 diff
(100 %id)
AI125630   .g 1249 to 1737 494 to 6       489/494
(98 %)
0 diff
(100 %id)
R46469 whole brain .g 1288 to 1737 465 to 9       457/465
(98 %)
0 diff
(100 %id)
H11962 whole brain .g 1293 to 1737 455 to 9       447/455
(98 %)
0 diff
(100 %id)
AA436685   .g 1321 to 1742 422 to 1   fully sequenced,   422/422
(100 %)
5 diff
(98.9 %id)
R42382.
matches multiple genes
whole brain .g 1338 to 1737 419 to 10     also hits gene snoboyby 410/422
(97 %)
0 diff
(100 %id)
AA854236 parathyroid gland, parathyroid tumor .g 1338 to 1737 405 to 7       399/405
(98 %)
0 diff
(100 %id)
AI950208 pooled germ cell tumors .g 1476 to 1737 273 to 12   AAA   262/262
(100 %)
3 diff
(98.9 %id)
AW006278 pooled germ cell tumors .g 1476 to 1737 273 to 12   AAA   262/262
(100 %)
0 diff
(100 %id)
AI968411 pooled germ cell tumors .g 1476 to 1737 273 to 12   AAA   262/262
(100 %)
0 diff
(100 %id)
R38804 whole brain .g 1515 to 1737 231 to 9       223/231
(96 %)
0 diff
(100 %id)
AA887186 Kidney .g 1576 to 1735 160 to 1       160/160
(100 %)
0 diff
(100 %id)
AK294487 amygdala .h 1 to 1364 1 to 1364 exact tiling clone,   1364/1364
(100 %)
1 diff
(100.0 %id)
DB149406 thymus .h 1 to 532 2 to 535 exact capped   534/534
(100 %)
2 diff
(99.7 %id)
DA033466   .h 2 to 572 2 to 572 exact capped   571/571
(100 %)
0 diff
(100 %id)
DA190293 amygdala .h 2 to 608 2 to 607 exact capped   606/606
(100 %)
1 diff
(99.9 %id)
DA283665 corpus callosum .h 2 to 570 2 to 571 exact capped   570/570
(100 %)
1 diff
(99.9 %id)
DA936956 Spleen .h 2 to 581 2 to 582 exact capped   581/584
(99 %)
2 diff
(99.7 %id)
DA954908 Spleen .h 2 to 574 2 to 575 S26X capped   574/574
(100 %)
3 diff
(99.5 %id)
DB083159 testis .h 2 to 552 2 to 552 exact capped   551/551
(100 %)
0 diff
(100 %id)
DB124136 thymus .h 2 to 576 2 to 576 exact capped   575/575
(100 %)
0 diff
(100 %id)
DB149157 thymus .h 2 to 532 2 to 533 exact capped   532/532
(100 %)
1 diff
(99.9 %id)
DB151909 thymus .h 2 to 595 2 to 595 exact capped   594/596
(99 %)
1 diff
(99.9 %id)
DB161166 thymus .h 2 to 571 2 to 571 exact capped   570/570
(100 %)
0 diff
(100 %id)
DB164064 thymus .h 2 to 575 2 to 575 exact capped   574/574
(100 %)
0 diff
(100 %id)
DB164375 thymus .h 2 to 580 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
BG005461 placenta_normal .h 155 to 521 414 to 52 S24R T32A G61A T73L Q75N ...     363/428
(84 %)
18 diff
(95.8 %id)
AA326029 brain, cerebellum .h 334 to 657 1 to 324       324/324
(100 %)
1 diff
(99.7 %id)
AW272567 colon, moderately-differentiated adenocarcinoma .h 396 to 774 76 to 454     Submitted on the opposite strand 379/454
(83 %)
6 diff
(98.7 %id)
AW502176 lymph .h 1008 to 1345 343 to 6     Submitted on the opposite strand 338/511
(66 %)
0 diff
(100 %id)
AI469197 Kidney .h 1026 to 1472 447 to 1   tiling clone,   447/447
(100 %)
0 diff
(100 %id)
AK296382 thalamus .i 1 to 1298 1 to 1298 exact tiling clone,   1298/1298
(100 %)
3 diff
(99.8 %id)
DC342959 thalamus .i 1 to 556 1 to 556       556/556
(100 %)
0 diff
(100 %id)
N68986 multiple sclerosis lesions .i 722 to 1149 433 to 1   tiling clone,   433/453
(95 %)
10 diff
(97.8 %id)
H60927 liver and spleen .i 1054 to 1386 1 to 341   tiling clone,   341/343
(99 %)
10 diff
(97.1 %id)
H60841 liver and spleen .i 1604 to 1963 372 to 1   tiling clone,   372/384
(96 %)
16 diff
(95.9 %id)
DA138474 alzheimer cortex .j 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
BM504576 Pancreas, Purified pancreatic islet .k 1 to 464 464 to 1 exact tiling clone,   464/464
(100 %)
2 diff
(99.6 %id)
BM563038 brain, medulla .l 1 to 651 20 to 667 exact tiling clone,   648/753
(86 %)
14 diff
(98.2 %id)
AL041787 testis .l 650 to 1330 1 to 680   tiling clone,   680/680
(100 %)
8 diff
(98.9 %id)
AL041873 testis .l 650 to 1291 1 to 641   tiling clone,   641/641
(100 %)
2 diff
(99.7 %id)
H72386 liver and spleen .m-u 1 to 208 177 to 384   tiling clone,   208/384
(54 %)
6 diff
(98.5 %id)
AA064869   .m-u 86 to 379 1 to 305   tiling clone, fully sequenced, Submitted on the opposite strand 305/305
(100 %)
3 diff
(99.1 %id)
W26958 eye, retina .m-u 120 to 604 20 to 504       485/526
(92 %)
13 diff
(97.6 %id)
W28256 eye, retina .m-u 127 to 601 486 to 13   tiling clone,   474/535
(88 %)
0 diff
(100 %id)
BM541266 leiomyosarcoma, uterus .m-u 186 to 684 1 to 504       504/1274
(39 %)
13 diff
(99.0 %id)
AW499535 lymph .m-u 237 to 452 335 to 550       216/550
(39 %)
6 diff
(99.0 %id)
TI_154157523   .m-u 237 to 524 407 to 694       288/616
(46 %)
8 diff
(98.8 %id)
TI_158439210   .m-u 237 to 524 412 to 699       288/617
(46 %)
9 diff
(98.6 %id)
BE172801 head_neck .m-u 329 to 598 1 to 270       270/270
(100 %)
7 diff
(97.5 %id)
BG168724 hypernephroma, cell line, Kidney .m-u 336 to 1091 1 to 750   tiling clone,   750/941
(79 %)
14 diff
(98.6 %id)
AA065146   .m-u 349 to 710 372 to 1   fully sequenced, Submitted on the opposite strand 372/372
(100 %)
3 diff
(99.2 %id)
BM737785 Ascites, stomach .n-u 1 to 614 1 to 614 P55L tiling clone,   614/614
(100 %)
1 diff
(99.9 %id)
CV326512 nervous_tumor .n-u 196 to 561 367 to 1     Submitted on the opposite strand 367/367
(100 %)
15 diff
(96.0 %id)
BC128216 PCR rescued clones .n-u 334 to 1031 12 to 709   tiling clone,   698/714
(97 %)
1 diff
(99.9 %id)
BC150162 PCR rescued clones .n-u 334 to 1031 11 to 708       698/713
(97 %)
1 diff
(99.9 %id)
AA310140   .n-u 400 to 638 1 to 239       239/239
(100 %)
1 diff
(99.6 %id)
AI085312 anaplastic oligodendroglioma, brain .o 1 to 471 471 to 1 exact tiling clone,   471/471
(100 %)
0 diff
(100 %id)
BF853629 lung_normal .p-u 1 to 383 1 to 383 exact tiling clone,   383/383
(100 %)
4 diff
(99.0 %id)
BF922054 nervous_tumor .p-u 24 to 141 1 to 118       118/118
(100 %)
10 diff
(91.6 %id)
BG944183 blood Gene ATPAF2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BF833908 head_neck Gene ATPAF2, variant not shown              
BM504902 Pancreas, Purified pancreatic islet Gene ATPAF2, variant not shown              
DB298252 cerebellum Gene ATPAF2, variant not shown              
DA089450 cerebellum Gene ATPAF2, variant not shown       capped      
F05506 brain, total brain Gene ATPAF2, variant not shown              
AL691594   Gene ATPAF2, variant not shown         This clone was ignored    
AL589606 human skeletal muscle Gene ATPAF2, variant not shown         This clone was ignored    
AL589607 human skeletal muscle Gene ATPAF2, variant not shown       AAA This clone was ignored    
ES314910 occipital scalp hair, skin Gene ATPAF2, variant not shown              
DB452019 testis Gene ATPAF2, variant not shown         This clone was ignored    
DB456856 testis Gene ATPAF2, variant not shown         This clone was ignored    
T84154 liver and spleen Gene ATPAF2, variant not shown              
N28939 melanocyte Gene ATPAF2, variant not shown              
BG120652 adenocarcinoma, cell line, Liver Gene ATPAF2, variant not shown              
BG253229 adenocarcinoma, cell line, Liver Gene ATPAF2, variant not shown              
BG259027 embryonal carcinoma, cell line, testis Gene ATPAF2, variant not shown              
BI224154 cervical carcinoma cell line, cervix Gene ATPAF2, variant not shown              
BM555698 amelanotic melanoma, cell line, skin Gene ATPAF2, variant not shown         This clone was ignored    
BM558942 amelanotic melanoma, cell line, skin Gene ATPAF2, variant not shown         This clone was ignored    
BM561309 amelanotic melanoma, cell line, skin Gene ATPAF2, variant not shown         This clone was ignored    
CK822430 Pancreas, Purified pancreatic islet Gene ATPAF2, variant not shown         Submitted on the opposite strand    
CK822431 Pancreas, Purified pancreatic islet Gene ATPAF2, variant not shown         Submitted on the opposite strand    
DA759880   Gene ATPAF2, variant not shown       capped      
T32510 gallbladder Gene ATPAF2, variant not shown              
DB084669 testis Gene ATPAF2, variant not shown       capped This clone was ignored    
DB140452 thymus Gene ATPAF2, variant not shown       capped      
W26771 eye, retina Gene ATPAF2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n-u, .o, .p-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI