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Gene ATP9BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
213 supporting clones for gene ATP9B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC400944 testis .a 1 to 536 1 to 536   tiling clone,   536/536
(100 %)
2 diff
(99.7 %id)
AK308291 testis .a 17 to 2916 1 to 2900   tiling clone,   2900/2900
(100 %)
3 diff
(99.9 %id)
DA338160 hippocampus .a 17 to 593 2 to 580   capped   579/586
(98 %)
2 diff
(99.7 %id)
DC400247 testis .a 17 to 546 1 to 530       530/530
(100 %)
1 diff
(99.9 %id)
DB120242 thymus .a 17 to 569 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA066340 cerebellum .a 19 to 578 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
NM_198531.3   .a 21 to 4375 1 to 4355 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 4355/4355
(100 %)
0 diff
(100 %id)
DA954499 Spleen .a 31 to 550 2 to 525   capped   524/524
(100 %)
4 diff
(99.3 %id)
DB154360 thymus .a 31 to 424 2 to 395   capped   394/394
(100 %)
1 diff
(99.8 %id)
DB215144 trachea .a 31 to 577 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
DC337873 substantia nigra .a 32 to 573 1 to 542       542/542
(100 %)
1 diff
(99.9 %id)
AW298281   .a 78 to 600 1 to 523     Submitted on the opposite strand 523/523
(100 %)
1 diff
(99.9 %id)
AW450716   .a 78 to 562 1 to 486     Submitted on the opposite strand 486/486
(100 %)
2 diff
(99.6 %id)
DB269926 uterus .a 95 to 570 2 to 479   capped   478/478
(100 %)
2 diff
(99.6 %id)
AA722012 pineal gland .a 102 to 658 1 to 553     Submitted on the opposite strand 553/553
(100 %)
13 diff
(97.7 %id)
DB441872 testis .a 152 to 422 152 to 422       271/422
(64 %)
7 diff
(98.4 %id)
TI_1948214162   .a 187 to 592 135 to 540       406/706
(57 %)
6 diff
(99.2 %id)
TI_1948214450   .a 187 to 592 153 to 558       406/562
(72 %)
6 diff
(99.0 %id)
EL734807 mixed .a 191 to 592 1 to 402       402/571
(70 %)
0 diff
(100 %id)
BE001191 breast_normal .a 650 to 1073 451 to 27     Submitted on the opposite strand 429/462
(92 %)
19 diff
(95.9 %id)
BE001244 breast_normal .a 650 to 1072 448 to 28     Submitted on the opposite strand 421/459
(91 %)
1 diff
(99.8 %id)
DN999607   .a 873 to 1449 1 to 576       576/609
(94 %)
8 diff
(98.7 %id)
CO249243 Chondrosarcoma Lung Metastasis cell lines, lung .a 1116 to 1764 8 to 651       644/714
(90 %)
31 diff
(95.7 %id)
DB028190 testis .a 1139 to 1443 233 to 537   capped   305/536
(56 %)
6 diff
(98.9 %id)
DB062555 testis .a 1159 to 1692 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
BF334920 colon .a 1201 to 1414 8 to 208       204/208
(98 %)
8 diff
(96.2 %id)
CN304184 embryonic stem cells, cell lines H1, H7, andH9 .a 1395 to 1854 1 to 460       460/460
(100 %)
1 diff
(99.8 %id)
AA360626   .a 1446 to 1605 1 to 161       161/161
(100 %)
5 diff
(96.9 %id)
AA151636 uterus .a 1523 to 2054 1 to 532   tiling clone,   532/532
(100 %)
1 diff
(99.9 %id)
AA478851 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1523 to 1932 1 to 409       409/409
(100 %)
2 diff
(99.6 %id)
AW362443 colon .a 2174 to 2386 215 to 2       214/218
(98 %)
8 diff
(96.4 %id)
AW362452 colon .a 2179 to 2468 20 to 310       291/312
(93 %)
11 diff
(96.5 %id)
AW604966 colon .a 2316 to 2566 259 to 9       251/360
(69 %)
1 diff
(99.8 %id)
U78978 brain .a 2464 to 3547 1 to 1084       1084/1084
(100 %)
10 diff
(99.1 %id)
AW410557 muscle, rhabdomyosarcoma .a 2466 to 3026 9 to 569   tiling clone,   561/569
(98 %)
6 diff
(99.0 %id)
R87856 brain .a 2485 to 2854 7 to 379       373/401
(93 %)
12 diff
(97.1 %id)
AJ006268 brain .a 2491 to 4064 1 to 1574   tiling clone, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 1574/1574
(100 %)
4 diff
(99.8 %id)
H30693 brain .a 2505 to 2873 27 to 397       371/457
(81 %)
7 diff
(98.5 %id)
R85222 brain .a 2557 to 2617 1 to 61       61/61
(100 %)
0 diff
(100 %id)
BI087015 cervix .a 2637 to 3288 1 to 664       664/917
(72 %)
20 diff
(97.9 %id)
BF171246 blood .a 2685 to 2948 1 to 266       266/300
(88 %)
17 diff
(94.4 %id)
BX280259 ovary (pool of 3) .a 2739 to 3246 1 to 508       508/508
(100 %)
0 diff
(100 %id)
BI771040 pooled lung and spleen .a 2808 to 3540 1 to 758       729/758
(96 %)
38 diff
(95.0 %id)
TI_57179702   .a 2813 to 3540 70 to 822       724/822
(88 %)
34 diff
(95.9 %id)
BI480637 Native Retinal Pigment Epithelium sheets, retina .a 3007 to 3291 12 to 297       286/297
(96 %)
8 diff
(97.4 %id)
AW389430 stomach .a 3109 to 3294 1 to 185       185/185
(100 %)
1 diff
(99.5 %id)
TI_227715400   .a 3348 to 4161 927 to 124   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 804/956
(84 %)
18 diff
(98.2 %id)
AW751212 colon .a 3350 to 3587 1 to 239       239/246
(97 %)
6 diff
(97.6 %id)
BG978633 colon_normal .a 3372 to 3543 170 to 6       165/183
(90 %)
0 diff
(100 %id)
BQ315501 epid_tumor .a 3372 to 3739 393 to 25       369/393
(93 %)
0 diff
(100 %id)
BQ362224 stomach .a 3373 to 3578 209 to 4       206/209
(98 %)
0 diff
(100 %id)
TI_149297428   .a 3456 to 4248 845 to 60   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 786/971
(80 %)
11 diff
(98.9 %id)
BX101766 whole brain .a 3463 to 4068 616 to 11   tiling clone,   606/616
(98 %)
0 diff
(100 %id)
AW843857 colon_normal .a 3575 to 3993 420 to 1       420/420
(100 %)
4 diff
(99.1 %id)
BM822958 stomach .a 3576 to 3878 1 to 303       303/303
(100 %)
2 diff
(99.4 %id)
CD365862 Alveolar Macrophage, lung .a 3588 to 4161 592 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 574/574
(100 %)
6 diff
(99.0 %id)
BM982492 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 3600 to 4248 667 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 649/649
(100 %)
4 diff
(99.4 %id)
CD369615 Alveolar Macrophage, lung .a 3617 to 4064 466 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 448/448
(100 %)
0 diff
(100 %id)
AI811946 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 3638 to 4064 427 to 1       427/427
(100 %)
2 diff
(99.6 %id)
H45330 breast .a 3647 to 3831 1 to 184       184/185
(99 %)
4 diff
(97.9 %id)
AI274734 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 3700 to 4064 365 to 1       365/365
(100 %)
2 diff
(99.5 %id)
AI206587 lung .a 3748 to 4064 317 to 1       317/317
(100 %)
0 diff
(100 %id)
AI985735 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 3842 to 4116 276 to 1       276/276
(100 %)
3 diff
(99.0 %id)
BQ773878 Chondrosarcoma Grade II, Left Pelvis .a 3842 to 4236 414 to 19   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 396/396
(100 %)
1 diff
(99.8 %id)
AI205900   .a 3848 to 4068 222 to 2       221/222
(99 %)
0 diff
(100 %id)
R27217 placenta .a 3876 to 4238 368 to 2       367/427
(85 %)
0 diff
(100 %id)
AW411030 muscle, rhabdomyosarcoma .a 3920 to 4375 494 to 39   tiling clone, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 456/456
(100 %)
0 diff
(100 %id)
AW410558 muscle, rhabdomyosarcoma .a 3921 to 4378 481 to 24   tiling clone,   458/481
(95 %)
0 diff
(100 %id)
AA813150   .a 3938 to 4162 231 to 7       225/231
(97 %)
0 diff
(100 %id)
AA557300 breast .a 3938 to 4236 309 to 11   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 299/299
(100 %)
1 diff
(99.7 %id)
AI686096 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 3978 to 4116 139 to 1       139/139
(100 %)
2 diff
(98.6 %id)
BQ189365 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3989 to 4254 1 to 267   fully sequenced,   267/267
(100 %)
2 diff
(99.3 %id)
TI_151731647   .a 3989 to 4371 461 to 79   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 383/956
(40 %)
4 diff
(99.6 %id)
AA906430 pooled .a 3991 to 4290 299 to 1       299/299
(100 %)
4 diff
(98.7 %id)
H45262 breast .a 4009 to 4359 368 to 18       351/368
(95 %)
0 diff
(100 %id)
CK299505 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4224 to 4383 166 to 7   fully sequenced,   160/166
(96 %)
8 diff
(95.2 %id)
BC125219 PCR rescued clones .b 1 to 3533 1 to 3533 exact tiling clone,   3533/3533
(100 %)
0 diff
(100 %id)
BC125220 PCR rescued clones .b 1 to 3530 1 to 3530 S39G     3530/3530
(100 %)
1 diff
(100.0 %id)
AK127634   .b 2018 to 4052 1 to 2035   tiling clone, available from FLJ,   2035/2035
(100 %)
9 diff
(99.6 %id)
DA599652   .b 2019 to 2575 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DR423407 eye, Pterygium .b 2638 to 3380 1 to 743       743/743
(100 %)
2 diff
(99.8 %id)
BM044173 carcinoma, cell line, Prostate .b 2702 to 3492 1 to 788       788/790
(99 %)
8 diff
(99.0 %id)
EB388514 eye, optic nerve .b 2713 to 3477 1 to 765       765/765
(100 %)
2 diff
(99.8 %id)
BM811407 ovary (pool of 3) .b 2719 to 3644 12 to 942       931/1042
(89 %)
19 diff
(98.2 %id)
CN289280 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 2885 to 3542 1 to 657       657/657
(100 %)
1 diff
(99.9 %id)
R20159 whole brain .b 3016 to 3330 5 to 320     Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 316/329
(96 %)
2 diff
(99.4 %id)
R20441 whole brain .b 3021 to 3388 1 to 369     Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 369/373
(98 %)
2 diff
(99.5 %id)
H13657 placenta .b 3123 to 3393 1 to 274       274/353
(77 %)
8 diff
(97.8 %id)
AI940002 colon .b 3184 to 3534 358 to 8       351/363
(96 %)
2 diff
(99.5 %id)
AI940667 stomach .b 3184 to 3481 299 to 3       297/304
(97 %)
4 diff
(98.7 %id)
AW062903 stomach .b 3184 to 3534 358 to 8       351/363
(96 %)
2 diff
(99.5 %id)
AW062913 stomach .b 3184 to 3376 193 to 1       193/198
(97 %)
1 diff
(99.5 %id)
AW176396 colon .b 3184 to 3536 356 to 3       354/369
(95 %)
1 diff
(99.8 %id)
BF374338 stomach .b 3184 to 3543 377 to 17       361/382
(94 %)
3 diff
(99.3 %id)
R62490 breast .b 3210 to 3301 1 to 92       92/92
(100 %)
0 diff
(100 %id)
AW751208 colon .b 3250 to 3534 307 to 23       285/307
(92 %)
0 diff
(100 %id)
AW176434 colon .b 3259 to 3534 1 to 276       276/283
(97 %)
7 diff
(97.6 %id)
AW291019   .b 3431 to 3880 467 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 450/450
(100 %)
1 diff
(99.8 %id)
DB319939   .b 3511 to 4052 542 to 1       542/542
(100 %)
7 diff
(98.8 %id)
R44945 whole brain .b 3639 to 3880 254 to 13   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 242/254
(95 %)
2 diff
(99.3 %id)
R44144 whole brain .b 3644 to 3880 250 to 14   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 237/269
(88 %)
0 diff
(100 %id)
BX537860 human retina .c 1 to 7334 1 to 7358 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (31/34 A in genome downstream of last aligned base) 7358/7358
(100 %)
52 diff
(99.3 %id)
BX648948 human amygdala .c 809 to 7172 1 to 6390   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (27/28 A in genome downstream of last aligned base) 6390/6390
(100 %)
50 diff
(99.3 %id)
BF368050 placenta_normal .c 2618 to 3009 1 to 391       391/392
(99 %)
7 diff
(98.3 %id)
BF756888 colon .c 2841 to 3219 379 to 1     Submitted on the opposite strand 379/397
(95 %)
11 diff
(97.3 %id)
BF367705 placenta_normal .c 3154 to 3593 10 to 449       440/449
(97 %)
6 diff
(98.7 %id)
BF593064 Kidney .c 3292 to 3763 471 to 1   tiling clone,   471/471
(100 %)
4 diff
(99.2 %id)
BF367706 placenta_normal .c 3385 to 3603 12 to 230       219/230
(95 %)
6 diff
(97.4 %id)
BI912902 brain .c 3385 to 4323 940 to 1     Submitted on the opposite strand 940/948
(99 %)
16 diff
(98.4 %id)
TI_57238639   .c 3385 to 4325 970 to 29     Submitted on the opposite strand 942/978
(96 %)
0 diff
(100 %id)
CB147004 Liver .c 3551 to 4194 1 to 644       644/644
(100 %)
3 diff
(99.6 %id)
DB086770 testis .c 3730 to 4286 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
BF372854 prostate_tumor .c 4961 to 5344 11 to 394       384/394
(97 %)
6 diff
(98.5 %id)
BF372851 prostate_tumor .c 4966 to 5150 11 to 195       185/195
(94 %)
6 diff
(97.0 %id)
BF372856 prostate_tumor .c 4966 to 5150 17 to 199   tiling clone,   183/199
(91 %)
6 diff
(97.0 %id)
BF372853 prostate_tumor .c 4967 to 5351 17 to 401       385/401
(96 %)
6 diff
(98.6 %id)
BQ313043 breast_normal .c 4970 to 5482 1 to 513   tiling clone,   513/513
(100 %)
8 diff
(98.5 %id)
BF372862 prostate_tumor .c 4971 to 5174 211 to 10       202/216
(93 %)
0 diff
(100 %id)
BF372857 prostate_tumor .c 4972 to 5194 19 to 240       222/240
(92 %)
6 diff
(97.5 %id)
BF372859 prostate_tumor .c 4972 to 5399 16 to 443       428/443
(96 %)
6 diff
(98.7 %id)
BF372861 prostate_tumor .c 4972 to 5359 21 to 407       387/407
(95 %)
6 diff
(98.6 %id)
BE818251 breast_normal .c 4978 to 5616 1 to 639       639/644
(99 %)
11 diff
(98.3 %id)
BF372863 prostate_tumor .c 4979 to 5160 1 to 182       182/182
(100 %)
4 diff
(97.9 %id)
BF372855 prostate_tumor .c 4988 to 5190 207 to 4       204/207
(98 %)
0 diff
(100 %id)
BQ313044 breast_normal .c 4992 to 5493 1 to 503       503/503
(100 %)
4 diff
(99.3 %id)
BF372860 prostate_tumor .c 4996 to 5389 1 to 393       393/393
(100 %)
6 diff
(98.5 %id)
BE818252 breast_normal .c 5044 to 5585 1 to 541       541/549
(98 %)
14 diff
(97.5 %id)
BF372850 prostate_tumor .c 5046 to 5257 7 to 218       212/218
(97 %)
7 diff
(96.8 %id)
BF372849 prostate_tumor .c 5047 to 5331 1 to 284       284/284
(100 %)
3 diff
(99.0 %id)
BF329655 breast_normal .c 5085 to 5345 1 to 261       261/261
(100 %)
4 diff
(98.5 %id)
BF329654 breast_normal .c 5088 to 5349 1 to 263       263/263
(100 %)
3 diff
(98.9 %id)
BQ373600 prostate_tumor .c 5129 to 5534 405 to 1       405/405
(100 %)
6 diff
(98.6 %id)
BE771207 prostate_tumor .c 5158 to 5583 433 to 11       423/433
(97 %)
0 diff
(100 %id)
BE771206 prostate_tumor .c 5172 to 5613 460 to 19       442/460
(96 %)
0 diff
(100 %id)
BE771199 prostate_tumor .c 5192 to 5613 439 to 19       421/439
(95 %)
0 diff
(100 %id)
BE771200 prostate_tumor .c 5193 to 5616 442 to 18       425/442
(96 %)
0 diff
(100 %id)
BE818244 breast_normal .c 5195 to 5616 1 to 421       421/424
(99 %)
8 diff
(98.2 %id)
BE771171 prostate_tumor .c 5200 to 5534 334 to 1       334/334
(100 %)
3 diff
(99.2 %id)
BE771172 prostate_tumor .c 5204 to 5613 426 to 18       409/426
(96 %)
0 diff
(100 %id)
BE818239 breast_normal .c 5210 to 5616 1 to 406       406/409
(99 %)
7 diff
(98.3 %id)
BE771174 prostate_tumor .c 5269 to 5616 362 to 16       347/362
(95 %)
0 diff
(100 %id)
BE771179 prostate_tumor .c 5273 to 5587 12 to 324       313/324
(96 %)
6 diff
(98.2 %id)
BQ373596 prostate_tumor .c 5306 to 5536 263 to 34   tiling clone,   230/263
(87 %)
0 diff
(100 %id)
BE771176 prostate_tumor .c 5348 to 5591 281 to 39       243/282
(86 %)
0 diff
(100 %id)
BE771196 prostate_tumor .c 5426 to 5616 20 to 208       189/211
(89 %)
10 diff
(95.3 %id)
AI351520   .c 5482 to 5877 1 to 396     Submitted on the opposite strand 396/396
(100 %)
3 diff
(99.3 %id)
DB341160 testis .c 6929 to 7446 518 to 1   tiling clone,   518/518
(100 %)
7 diff
(98.7 %id)
DB040995 testis .d 1 to 553 2 to 555   tiling clone, capped   554/554
(100 %)
3 diff
(99.5 %id)
DB337838 testis .d 1306 to 1853 548 to 1   tiling clone,   548/548
(100 %)
1 diff
(99.9 %id)
DA473341   .e 1 to 550 2 to 551   tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
DB107064 thymus .e 1 to 582 2 to 584   tiling clone, capped   583/583
(100 %)
2 diff
(99.7 %id)
DB506797 testis .e 536 to 1007 1 to 478   tiling clone, Submitted on the opposite strand 473/478
(98 %)
13 diff
(97.3 %id)
BX471307   .f 1 to 474 1 to 474   tiling clone, Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 474/474
(100 %)
0 diff
(100 %id)
BX471308   .f 5163 to 5774 633 to 22   tiling clone, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 612/612
(100 %)
2 diff
(99.7 %id)
BG702696 brain, hippocampus .g 1 to 690 1 to 689   available from MGC,   691/690
(100 %)
6 diff
(99.2 %id)
BC036473 Brain, hippocampus .g 1 to 2845 1 to 2845 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 2845/2845
(100 %)
7 diff
(99.8 %id)
BI545789 brain, hippocampus .g 1 to 747 1 to 745   available from MGC,   745/760
(98 %)
13 diff
(98.3 %id)
TI_44165797   .g 4 to 747 86 to 827       742/842
(88 %)
16 diff
(98.1 %id)
BC022535 Brain, hippocampus .g 6 to 2845 1 to 2840 exact available from MGC, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 2840/2840
(100 %)
5 diff
(99.9 %id)
CB158783 Liver .h 1 to 428 1 to 427   tiling clone,   427/427
(100 %)
3 diff
(99.3 %id)
BI770987 pooled lung and spleen .h 48 to 263 1 to 217   tiling clone,   217/217
(100 %)
1 diff
(99.6 %id)
TI_57179648   .h 48 to 263 60 to 276       217/276
(78 %)
7 diff
(97.5 %id)
R51412 whole brain .h 174 to 583 1 to 415     Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 415/489
(84 %)
13 diff
(97.4 %id)
BI766770 pooled lung and spleen .h 189 to 890 1 to 697   available from MGC,   699/697
(100 %)
8 diff
(98.9 %id)
TI_57180827   .h 189 to 890 28 to 724       699/724
(96 %)
14 diff
(98.1 %id)
BC037546 Lung, Spleen, fetal, pooled .h 190 to 1972 1 to 1781   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 1781/1781
(100 %)
4 diff
(99.8 %id)
CX760754 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .h 667 to 1399 1 to 723       723/822
(87 %)
13 diff
(98.5 %id)
R17452 whole brain .h 673 to 1170 4 to 508     Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 505/508
(99 %)
18 diff
(96.5 %id)
R50093 breast .h 797 to 1253 1 to 464       464/472
(98 %)
15 diff
(96.9 %id)
CB159802 Liver .h 936 to 1397 1 to 462       462/462
(100 %)
0 diff
(100 %id)
CB159875 Liver .h 936 to 1480 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
R50094 breast .h 1353 to 1676 326 to 1   tiling clone,   326/458
(71 %)
8 diff
(98.3 %id)
R42799 whole brain .h 1381 to 1676 311 to 13   AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 299/299
(100 %)
8 diff
(97.4 %id)
R51300 whole brain .h 1625 to 1972 361 to 12   tiling clone, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 350/353
(99 %)
2 diff
(99.5 %id)
BG988648 head_neck .i 1 to 368 369 to 4   tiling clone,   368/369
(99 %)
5 diff
(98.7 %id)
AW965917   .i 341 to 908 1 to 568   tiling clone,   568/572
(99 %)
12 diff
(98.0 %id)
N53929 liver and spleen .i 764 to 1269 510 to 1   tiling clone,   510/512
(99 %)
4 diff
(99.3 %id)
AK097757 testis .j -8 to 1914 1 to 1923 exact tiling clone, available from FLJ,   1923/1923
(100 %)
3 diff
(99.9 %id)
DB050264 testis .j 1 to 523 10 to 534   capped   533/533
(100 %)
3 diff
(99.5 %id)
DB338515 testis .j 1384 to 1914 532 to 1       532/532
(100 %)
2 diff
(99.7 %id)
DN993911 brain, whole brain .k 1 to 528 8 to 535   tiling clone,   528/535
(98 %)
6 diff
(98.9 %id)
BX113295 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 174 to 840 1 to 667       667/667
(100 %)
1 diff
(99.9 %id)
AI335888 uterus .k 411 to 857 450 to 4       447/450
(99 %)
2 diff
(99.6 %id)
AI268195 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 432 to 857 427 to 2       426/430
(99 %)
1 diff
(99.8 %id)
AA479950.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 438 to 857 421 to 2   tiling clone, also hits gene NR2F2 420/421
(99 %)
0 diff
(100 %id)
AI268216 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 454 to 857 408 to 2       407/427
(95 %)
3 diff
(99.3 %id)
AI436179 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k 454 to 857 404 to 2       403/423
(95 %)
1 diff
(99.8 %id)
BI031756 marrow .l-u 1 to 546 1 to 546   tiling clone,   546/546
(100 %)
1 diff
(99.9 %id)
AK130499 salivary gland .l-u 178 to 2620 1 to 2443 exact tiling clone, available from FLJ,   2443/2443
(100 %)
2 diff
(100.0 %id)
BI030570 marrow .l-u 451 to 736 1 to 286       286/300
(95 %)
2 diff
(99.4 %id)
BI030581 marrow .l-u 451 to 733 1 to 283       283/299
(94 %)
2 diff
(99.4 %id)
BI029327 marrow .l-u 457 to 733 30 to 305   tiling clone,   276/318
(86 %)
6 diff
(98.2 %id)
BI029383 marrow .l-u 486 to 728 243 to 1       243/243
(100 %)
1 diff
(99.6 %id)
AK295981 substantia nigra .m 1 to 977 1 to 977 exact tiling clone,   977/979
(99 %)
2 diff
(99.8 %id)
BF194901 Kidney .m 65 to 639 1 to 575     Submitted on the opposite strand 575/575
(100 %)
0 diff
(100 %id)
BC053561 Skin, melanotic melanoma. .m 83 to 1643 1 to 1561   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 1561/1561
(100 %)
0 diff
(100 %id)
BU194775 melanotic melanoma, skin .m 83 to 914 12 to 850   available from MGC,   839/854
(98 %)
16 diff
(98.2 %id)
TI_1948214164   .m 166 to 569 532 to 129       404/1401
(28 %)
9 diff
(99.4 %id)
DB446340 testis .n 1 to 423 1 to 425   tiling clone,   425/429
(99 %)
6 diff
(98.7 %id)
DA095584 cerebellum .n 199 to 762 2 to 566   tiling clone, capped   565/565
(100 %)
1 diff
(99.9 %id)
CD654775 Embryonic Stem cells .n 595 to 1159 12 to 561   tiling clone,   550/680
(80 %)
42 diff
(93.9 %id)
AI018742   .o 1 to 555 556 to 2 exact tiling clone,   555/556
(99 %)
1 diff
(99.9 %id)
AL096735 testis .p 1 to 1510 1 to 1510 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (16/18 A in genome downstream of last aligned base) 1510/1510
(100 %)
2 diff
(99.9 %id)
AA021486 eye, retina .q 1 to 472 1 to 472 Q4H P5T Q6A T7N R8A ... tiling clone, Submitted on the opposite strand 472/472
(100 %)
7 diff
(98.6 %id)
AA783043   .r 1 to 276 277 to 2   tiling clone,   276/278
(99 %)
0 diff
(100 %id)
AA809329 germinal center B cell .r 43 to 272 237 to 8   tiling clone,   230/237
(97 %)
0 diff
(100 %id)
BQ718462 sympathetic trunk .r 189 to 973 1 to 794   tiling clone,   794/909
(87 %)
21 diff
(97.7 %id)
CD358296 testis .r 859 to 1575 1 to 728 exact tiling clone,   728/906
(80 %)
23 diff
(97.5 %id)
F05510 brain, total brain .s-u 1 to 281 1 to 281   tiling clone,   281/281
(100 %)
0 diff
(100 %id)
R18592 whole brain .s-u 91 to 466 1 to 388       388/438
(88 %)
17 diff
(96.2 %id)
U55973 eye .s-u 92 to 924 1 to 836   tiling clone,   836/836
(100 %)
14 diff
(98.4 %id)
R11914 whole brain .s-u 92 to 612 1 to 523       523/529
(98 %)
18 diff
(96.6 %id)
AW860866 colon .s-u 218 to 565 359 to 12   tiling clone,   348/361
(96 %)
0 diff
(100 %id)
T05856   .s-u 310 to 624 1 to 317   tiling clone,   317/317
(100 %)
4 diff
(98.8 %id)
R13246 whole brain .s-u 318 to 720 1 to 412   tiling clone,   412/416
(99 %)
30 diff
(92.8 %id)
R39106 whole brain .s-u 934 to 1260 331 to 6   tiling clone,   326/340
(95 %)
0 diff
(100 %id)
R41672 whole brain .s-u 1015 to 1260 253 to 6   tiling clone,   248/254
(97 %)
0 diff
(100 %id)
Z38487 brain, total brain .s-u 1318 to 1552 235 to 1   tiling clone,   235/235
(100 %)
0 diff
(100 %id)
BU194283 bone marrow, from acute myelogenous leukemia .t-u 1 to 661 1 to 667 exact tiling clone,   667/840
(79 %)
8 diff
(99.1 %id)
BP420278 small intestine .u 1 to 509 1 to 511 G2A T28A tiling clone, Submitted on the opposite strand 511/511
(100 %)
6 diff
(98.9 %id)
CR746197   .va 1 to 496 499 to 2 S7L tiling clone, Submitted on the opposite strand 498/499
(99 %)
0 diff
(100 %id)
AK093704 thymus Gene ATP9B, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AX748269   Gene ATP9B, variant not shown         Suspected internal deletion, this clone was ignored    
DB511468 testis Gene ATP9B, variant not shown         Submitted on the opposite strand    
R97764 liver and spleen Gene ATP9B, variant not shown              
R97765 liver and spleen Gene ATP9B, variant not shown              
AW293054   Gene ATP9B, variant not shown       AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base)    
BU556481 ovary, teratocarcinoma, cell line Gene ATP9B, variant not shown         This clone was ignored    
DB117320 thymus Gene ATP9B, variant not shown       capped      
DB343740 thymus Gene ATP9B, variant not shown              
DB197262 trachea Gene ATP9B, variant not shown       capped This clone was ignored    
DB348161 trachea Gene ATP9B, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m, .n, .o, .p, .q, .r, .s-u, .t-u, .u, .va Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C