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Gene ATP6V0A4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
60 supporting clones for gene ATP6V0A4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA857655 placenta .a 1 to 539 2 to 540   tiling clone, capped   539/539
(100 %)
1 diff
(99.9 %id)
NM_130841.2   .a 11 to 3100 1 to 3090   RefSeq, AAA   3090/3090
(100 %)
0 diff
(100 %id)
DB208974 trachea .a 114 to 614 2 to 501   capped   500/500
(100 %)
1 diff
(99.8 %id)
BX486766   .a 115 to 683 1 to 570   tiling clone,   570/581
(98 %)
3 diff
(99.5 %id)
DA449834 tongue, tumor tissue .a 117 to 688 2 to 573   tiling clone, capped   572/572
(100 %)
1 diff
(99.9 %id)
CD673292 eye, Iris .a 130 to 763 1 to 634   tiling clone,   634/637
(99 %)
14 diff
(97.9 %id)
NM_130840.2   .b 1 to 3031 2 to 3032 exact RefSeq, AAA   3032/3032
(100 %)
0 diff
(100 %id)
DA633063 Kidney .b 1 to 564 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB221261 trachea .b 1 to 564 2 to 565   tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
BX486706   .b 14 to 463 1 to 450       450/450
(100 %)
4 diff
(99.2 %id)
DA537822 Kidney .b 20 to 582 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BC109304 PCR rescued clones .b 92 to 2800 1 to 2709 P252R tiling clone,   2709/2709
(100 %)
2 diff
(100.0 %id)
BC109305 PCR rescued clones .b 92 to 2800 1 to 2709 P252R tiling clone,   2709/2709
(100 %)
2 diff
(100.0 %id)
BF515545   .b 190 to 671 501 to 20       482/501
(96 %)
0 diff
(100 %id)
CD636126   .b 335 to 776 1 to 446       446/451
(98 %)
12 diff
(97.4 %id)
DA630575 Kidney .b 469 to 1013 12 to 556   capped   547/555
(98 %)
6 diff
(99.0 %id)
DA624574 Kidney .b 510 to 1053 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
CD636127   .b 860 to 1628 774 to 9   tiling clone,   766/774
(98 %)
3 diff
(99.7 %id)
CD630251   .b 996 to 1628 641 to 11       631/650
(97 %)
2 diff
(99.7 %id)
CD630249   .b 1042 to 1628 602 to 11       592/602
(98 %)
5 diff
(99.2 %id)
CD630255   .b 1050 to 1628 588 to 10       579/588
(98 %)
0 diff
(100 %id)
BU178313 melanotic melanoma, skin .b 1092 to 1879 19 to 812       794/870
(91 %)
25 diff
(97.2 %id)
CD630253   .b 1095 to 1628 539 to 10       530/539
(98 %)
0 diff
(100 %id)
BI765487 pooled colon, kidney, stomach .b 1586 to 2517 1 to 932       932/1017
(91 %)
32 diff
(96.9 %id)
TI_57152409   .b 1586 to 2517 34 to 965       932/1050
(88 %)
38 diff
(96.4 %id)
BU183444 melanotic melanoma, skin .b 1631 to 2433 1 to 813       813/838
(97 %)
17 diff
(98.0 %id)
BG696616 skin .b 1746 to 2545 8 to 805       803/805
(99 %)
12 diff
(98.6 %id)
CB853365 Human Lung Epithelial cells, lung .b 2280 to 3031 766 to 19   AAA   748/748
(100 %)
3 diff
(99.6 %id)
BM764852 Ascites, stomach .b 2358 to 2935 1 to 578       578/578
(100 %)
0 diff
(100 %id)
AA994979 Kidney .b 2437 to 3031 611 to 18   AAA   594/619
(95 %)
11 diff
(98.3 %id)
AI302408 2 pooled tumors (clear cell type), Kidney .b 2499 to 2970 472 to 1       472/472
(100 %)
1 diff
(99.8 %id)
DB320562 Kidney .b 2564 to 3031 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AA970305 2 pooled tumors (clear cell type), Kidney .b 2593 to 3031 451 to 12   AAA   440/441
(99 %)
5 diff
(98.9 %id)
AA588493 normal prostate, Prostate .b 2605 to 3032 432 to 6   tiling clone,   427/439
(97 %)
0 diff
(100 %id)
AI347865 2 pooled tumors (clear cell type), Kidney .b 2608 to 3032 430 to 6       425/431
(98 %)
0 diff
(100 %id)
BG200635   .b 2711 to 2944 285 to 52     Submitted on the opposite strand 234/285
(82 %)
0 diff
(100 %id)
AA864691 Kidney .b 2719 to 3031 313 to 1       313/313
(100 %)
0 diff
(100 %id)
AA995090 Kidney .b 2735 to 3030 296 to 1       296/296
(100 %)
0 diff
(100 %id)
DA630434 Kidney .c 1 to 526 2 to 527   tiling clone, capped   526/526
(100 %)
1 diff
(99.9 %id)
AK292945 trachea .c 347 to 3481 1 to 3135 V2A     3135/3135
(100 %)
5 diff
(99.9 %id)
NM_020632.2   .c 347 to 3481 1 to 3135 exact RefSeq, AAA   3135/3135
(100 %)
0 diff
(100 %id)
DB230144 trachea .c 348 to 940 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DB238903 trachea .c 348 to 920 2 to 575   capped   574/575
(99 %)
2 diff
(99.7 %id)
DA631392 Kidney .c 350 to 925 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
AF245517 Kidney .c 362 to 3481 1 to 3120 V2A tiling clone, AAA   3120/3120
(100 %)
3 diff
(100.0 %id)
DA630166 Kidney .c 371 to 924 2 to 555   tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
CD630248   .c 389 to 966 1 to 578       578/578
(100 %)
5 diff
(99.2 %id)
CD630250   .c 389 to 1082 1 to 694       694/694
(100 %)
10 diff
(98.6 %id)
CD630252   .c 389 to 1014 1 to 629       629/629
(100 %)
8 diff
(98.8 %id)
CD630254   .c 389 to 1097 1 to 710       710/712
(99 %)
9 diff
(98.8 %id)
DA567530   .c 572 to 1120 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB320855 Kidney .c 2922 to 3480 559 to 1       559/559
(100 %)
2 diff
(99.7 %id)
DB114184 thymus .d 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
BX108597   .d 55 to 466 1 to 411       411/411
(100 %)
1 diff
(99.8 %id)
AA442025   .d 55 to 497 1 to 442       442/442
(100 %)
1 diff
(99.8 %id)
BE895703 melanotic melanoma, skin .d 76 to 772 1 to 692   tiling clone,   692/986
(70 %)
12 diff
(98.8 %id)
BE896069 melanotic melanoma, skin .d 98 to 541 1 to 452       452/534
(84 %)
7 diff
(98.7 %id)
BU155342 melanotic melanoma, skin .d 127 to 962 1 to 840   tiling clone,   840/859
(97 %)
10 diff
(98.9 %id)
AA441916   .d 1912 to 2338 427 to 1   tiling clone,   427/428
(99 %)
2 diff
(99.6 %id)
AA297866   .e 1 to 318 1 to 319 M50N K51E M52D S53V V54G ... tiling clone,   319/319
(100 %)
1 diff
(99.7 %id)
AK055789 Kidney Gene ATP6V0A4, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AI343783 2 pooled tumors (clear cell type), Kidney Gene ATP6V0A4, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BF108952 pooled Gene ATP6V0A4, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI