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Gene ATP2C1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
641 representative clones for gene ATP2C1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC307244 cerebellum .a 1 to 553 1 to 554   tiling clone,   554/554
(100 %)
2 diff
(99.7 %id)
DB453162.
matches multiple genes
testis .a 37 to 513 1 to 477     also hits gene ASTE1 477/477
(100 %)
1 diff
(99.8 %id)
DC422788 uterus .a 48 to 613 1 to 566       566/566
(100 %)
0 diff
(100 %id)
DC343429 thalamus .a 96 to 664 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
DC416737 trachea .a 98 to 657 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
DC310940 cerebellum .a 102 to 689 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
DC416329 trachea .a 104 to 673 1 to 570       570/570
(100 %)
0 diff
(100 %id)
CD702550 normal nasopharynx .a 114 to 575 1 to 459       459/459
(100 %)
9 diff
(98.1 %id)
DC307371 cerebellum .a 118 to 675 1 to 558       558/558
(100 %)
0 diff
(100 %id)
DC308248 cerebellum .a 118 to 664 1 to 547       547/547
(100 %)
1 diff
(99.9 %id)
DC310480 cerebellum .a 118 to 658 1 to 541       541/541
(100 %)
1 diff
(99.9 %id)
DC323383 brain .a 118 to 699 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DC324600 brain .a 118 to 706 1 to 589       589/589
(100 %)
0 diff
(100 %id)
DC343137 thalamus .a 118 to 679 1 to 562       562/563
(99 %)
0 diff
(100 %id)
DC400019 testis .a 118 to 671 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
DC404214 testis .a 118 to 694 1 to 577       577/577
(100 %)
0 diff
(100 %id)
DC404388 testis .a 118 to 706 1 to 589       589/589
(100 %)
2 diff
(99.7 %id)
DC415479 trachea .a 118 to 658 1 to 541       541/541
(100 %)
1 diff
(99.9 %id)
AK296470 thalamus .a 121 to 3574 1 to 3454 V380A tiling clone,   3454/3454
(100 %)
6 diff
(99.9 %id)
DC343563 thalamus .a 121 to 786 1 to 666       666/666
(100 %)
3 diff
(99.6 %id)
DC402845 testis .a 121 to 682 1 to 562       562/562
(100 %)
4 diff
(99.3 %id)
DC309206 cerebellum .a 123 to 673 1 to 551       551/551
(100 %)
0 diff
(100 %id)
DC417157 trachea .a 123 to 699 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
DC309264 cerebellum .a 127 to 679 1 to 553       553/554
(99 %)
1 diff
(99.9 %id)
DC307010 cerebellum .a 131 to 646 1 to 516       516/516
(100 %)
2 diff
(99.7 %id)
DC348206 tongue, tumor tissue .a 131 to 684 1 to 554       554/554
(100 %)
0 diff
(100 %id)
DC321705 brain .a 133 to 641 1 to 510       510/510
(100 %)
1 diff
(99.9 %id)
DC317826 amygdala .a 139 to 736 1 to 598       598/598
(100 %)
2 diff
(99.7 %id)
DC340980 thalamus .a 143 to 734 1 to 592       592/592
(100 %)
1 diff
(99.9 %id)
DC347753 tongue, tumor tissue .a 143 to 706 1 to 564       564/564
(100 %)
0 diff
(100 %id)
DC343899 thalamus .a 149 to 706 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
DC359067 lung .a 150 to 726 1 to 577       577/577
(100 %)
0 diff
(100 %id)
DC402950 testis .a 150 to 702 1 to 552       552/552
(100 %)
2 diff
(99.7 %id)
DC410431 thymus .a 150 to 744 1 to 595       595/595
(100 %)
5 diff
(99.2 %id)
DC412602 kidney, tumor tissue .a 150 to 708 1 to 557       557/557
(100 %)
2 diff
(99.7 %id)
DC418484 trachea .a 150 to 706 1 to 557       557/557
(100 %)
0 diff
(100 %id)
DC306683 cerebellum .a 152 to 723 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DC309999 cerebellum .a 152 to 710 1 to 559       559/559
(100 %)
1 diff
(99.9 %id)
DC318190 amygdala .a 152 to 715 1 to 564       564/564
(100 %)
2 diff
(99.7 %id)
DC321304 brain .a 152 to 700 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DC321538 brain .a 152 to 713 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC403551 testis .a 152 to 701 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
DC346205 tongue, tumor tissue .a 160 to 745 1 to 586       586/586
(100 %)
1 diff
(99.9 %id)
DC416216 trachea .a 163 to 719 1 to 557       557/557
(100 %)
3 diff
(99.5 %id)
DB451119.
matches multiple genes
testis .a 164 to 643 1 to 479     also hits gene ASTE1 479/479
(100 %)
4 diff
(99.2 %id)
DC310401 cerebellum .a 176 to 725 1 to 551       551/551
(100 %)
3 diff
(99.5 %id)
DC324165 brain .a 182 to 771 1 to 590       590/590
(100 %)
1 diff
(99.9 %id)
DC308531 cerebellum .a 186 to 766 12 to 592       581/592
(98 %)
7 diff
(98.9 %id)
DC306734 cerebellum .a 191 to 754 1 to 564       564/564
(100 %)
2 diff
(99.7 %id)
DC418249 trachea .a 207 to 726 1 to 521       521/521
(100 %)
2 diff
(99.7 %id)
DC348289 tongue, tumor tissue .a 208 to 782 1 to 575       575/575
(100 %)
0 diff
(100 %id)
DC412457 kidney, tumor tissue .a 208 to 755 1 to 548       548/548
(100 %)
2 diff
(99.7 %id)
DC407001 thymus .a 210 to 792 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DC408633 thymus .a 210 to 755 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
DC382300 placenta .a 213 to 789 1 to 577       577/577
(100 %)
3 diff
(99.5 %id)
DC347588 tongue, tumor tissue .a 214 to 768 1 to 555       555/555
(100 %)
0 diff
(100 %id)
DC418648 trachea .a 237 to 785 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DC415246 trachea .a 250 to 790 1 to 542       542/542
(100 %)
4 diff
(99.3 %id)
DC325089 brain .a 278 to 867 1 to 591       591/592
(99 %)
5 diff
(99.2 %id)
DC416622 trachea .a 278 to 681 1 to 404       404/404
(100 %)
0 diff
(100 %id)
DC309153 cerebellum .a 284 to 882 1 to 600       600/600
(100 %)
1 diff
(99.9 %id)
DC322885 brain .a 286 to 935 1 to 651       651/651
(100 %)
1 diff
(99.9 %id)
DC296136 synovial membrane tissue from rheumatioidarthritis .a 286 to 827 1 to 543       543/543
(100 %)
1 diff
(99.9 %id)
DC296400 synovial membrane tissue from rheumatioidarthritis .a 286 to 791 1 to 506       506/506
(100 %)
0 diff
(100 %id)
DC422901 uterus .a 286 to 830 1 to 546       546/546
(100 %)
3 diff
(99.5 %id)
DC309767 cerebellum .a 292 to 852 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
DC347511 tongue, tumor tissue .a 292 to 849 1 to 558       558/558
(100 %)
0 diff
(100 %id)
DC348223 tongue, tumor tissue .a 292 to 847 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
DC418416 trachea .a 292 to 859 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
TI_1948087712   .a 449 to 1109 135 to 796       662/1329
(49 %)
27 diff
(98.0 %id)
DA993909 synovial membrane tissue from rheumatioidarthritis .a 477 to 1014 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
DA344747 substantia nigra .a 479 to 1055 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
CN359250 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 494 to 1080 1 to 587       587/587
(100 %)
5 diff
(99.2 %id)
AW502007 lymph .a 506 to 963 8 to 465       458/465
(98 %)
6 diff
(98.8 %id)
TI_154157179   .a 506 to 1006 94 to 594       501/501
(100 %)
0 diff
(100 %id)
DA301705 hippocampus .a 511 to 1062 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB147294 thymus .a 588 to 1155 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA468409   .a 591 to 1147 2 to 560   capped   559/559
(100 %)
3 diff
(99.5 %id)
DA799235 brain .a 603 to 1146 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
EH338642   .a 617 to 667 1 to 51       51/51
(100 %)
0 diff
(100 %id)
DA172965 amygdala .a 635 to 1103 2 to 471   capped   470/470
(100 %)
1 diff
(99.8 %id)
DA411216 thalamus .a 641 to 1240 2 to 603   capped   602/602
(100 %)
5 diff
(99.2 %id)
DA818200   .a 646 to 1203 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA435173 tongue, tumor tissue .a 682 to 1246 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA457196 tongue, tumor tissue .a 683 to 1242 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
BP204760 coronary artery .a 732 to 1311 1 to 580       580/582
(99 %)
8 diff
(98.7 %id)
DA177023 amygdala .a 743 to 1203 2 to 463   capped   462/462
(100 %)
2 diff
(99.6 %id)
DA698920   .a 782 to 1294 2 to 514   capped   513/513
(100 %)
0 diff
(100 %id)
CN359257 embryonic stem cells, cell lines H1, H7, andH9 .a 825 to 1491 1 to 668       668/668
(100 %)
1 diff
(99.9 %id)
DA161969 amygdala .a 886 to 1459 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BI850605 hypernephroma, cell line, Kidney .a 926 to 1545 1 to 620       620/620
(100 %)
3 diff
(99.6 %id)
BG169253 hypernephroma, cell line, Kidney .a 927 to 1663 1 to 733       733/935
(78 %)
19 diff
(98.0 %id)
BX479112   .a 1080 to 1709 1 to 630       630/630
(100 %)
0 diff
(100 %id)
DB000293 breast, tumor tissue .a 1117 to 1512 80 to 475   capped   396/474
(83 %)
6 diff
(98.8 %id)
AL701155 human skeletal muscle .a 1164 to 1624 1 to 460       460/461
(99 %)
7 diff
(98.5 %id)
DA597282   .a 1184 to 1752 2 to 570   capped   569/570
(99 %)
2 diff
(99.7 %id)
DA027916   .a 1185 to 1753 2 to 569   capped   568/572
(99 %)
2 diff
(99.7 %id)
BQ311045 breast_normal .a 1195 to 1420 1 to 226       226/226
(100 %)
0 diff
(100 %id)
DA543840   .a 1300 to 1865 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
BE733576 choriocarcinoma, placenta .a 1338 to 2099 1 to 751       751/858
(87 %)
17 diff
(98.1 %id)
DA713857   .a 1349 to 1869 2 to 523   capped   520/522
(99 %)
2 diff
(99.7 %id)
BP203013 coronary artery .a 1352 to 1935 1 to 584   tiling clone,   584/584
(100 %)
2 diff
(99.7 %id)
BG777087 lung, mucoepidermoid carcinoma .a 1420 to 2171 1 to 754       754/754
(100 %)
14 diff
(98.2 %id)
BG702044 brain, hippocampus .a 1427 to 2205 1 to 779       779/779
(100 %)
14 diff
(98.3 %id)
DB467442.
matches multiple genes
hippocampus .a 1436 to 1887 1 to 453     also hits gene ASTE1 453/453
(100 %)
2 diff
(99.6 %id)
AI752982 bone marrow stroma .a 1464 to 1873 1 to 410     Submitted on the opposite strand 410/410
(100 %)
0 diff
(100 %id)
BX478155   .a 1479 to 1878 1 to 401       402/401
(100 %)
6 diff
(98.6 %id)
BP383661   .a 1487 to 2181 1 to 696       696/696
(100 %)
5 diff
(99.3 %id)
AW605884 head_neck .a 1516 to 1979 1 to 463       463/467
(99 %)
6 diff
(98.8 %id)
DA904341   .a 1529 to 2099 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BG386581 adenocarcinoma cell line, colon .a 1532 to 2286 1 to 755       755/805
(93 %)
8 diff
(99.1 %id)
BF346608 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1554 to 2329 1 to 774       774/938
(82 %)
28 diff
(97.1 %id)
BG007601 placenta_normal .a 1567 to 1952 1 to 384       384/384
(100 %)
2 diff
(99.5 %id)
BE967601 brain .a 1587 to 2246 1 to 662       662/757
(87 %)
16 diff
(97.9 %id)
DA270543 caudate nucleus .a 1594 to 2171 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
BE746456 adenocarcinoma cell line, ovary .a 1596 to 2372 1 to 771       771/771
(100 %)
11 diff
(98.6 %id)
BQ881060 dorsal root ganglia .a 1651 to 2497 1 to 854       854/910
(93 %)
18 diff
(98.1 %id)
BF935526 nervous_tumor .a 1659 to 1952 294 to 1     Submitted on the opposite strand 294/301
(97 %)
2 diff
(99.4 %id)
BQ338122 nervous_normal .a 1663 to 2263 14 to 614       601/614
(97 %)
7 diff
(98.9 %id)
BF819637 kidney_tumor .a 1664 to 1952 289 to 1     Submitted on the opposite strand 289/289
(100 %)
2 diff
(99.4 %id)
BF819643 kidney_tumor .a 1664 to 1952 289 to 1     Submitted on the opposite strand 289/289
(100 %)
2 diff
(99.4 %id)
BF895803 marrow .a 1664 to 1952 289 to 1     Submitted on the opposite strand 289/289
(100 %)
0 diff
(100 %id)
BF895878 marrow .a 1664 to 1952 1 to 288       288/288
(100 %)
3 diff
(99.0 %id)
BF897305 marrow .a 1664 to 1952 1 to 289       289/289
(100 %)
3 diff
(99.0 %id)
BF900850 marrow .a 1664 to 1952 289 to 1     Submitted on the opposite strand 289/289
(100 %)
0 diff
(100 %id)
BF901258 marrow .a 1664 to 1952 289 to 1     Submitted on the opposite strand 289/289
(100 %)
0 diff
(100 %id)
BF901259 marrow .a 1664 to 1952 289 to 1     Submitted on the opposite strand 289/289
(100 %)
0 diff
(100 %id)
BF901493 marrow .a 1664 to 1948 1 to 285       285/285
(100 %)
2 diff
(99.3 %id)
BF903614 marrow .a 1664 to 1952 1 to 289       289/289
(100 %)
0 diff
(100 %id)
BF934991 nervous_tumor .a 1664 to 1952 289 to 1     Submitted on the opposite strand 289/289
(100 %)
3 diff
(99.0 %id)
BF935783 nervous_tumor .a 1664 to 1952 289 to 1     Submitted on the opposite strand 289/289
(100 %)
0 diff
(100 %id)
BI018681 marrow .a 1664 to 1952 1 to 289       289/289
(100 %)
2 diff
(99.4 %id)
BQ334560 marrow .a 1664 to 1952 1 to 290       290/290
(100 %)
4 diff
(98.7 %id)
BF901247 marrow .a 1670 to 1952 1 to 283       283/283
(100 %)
2 diff
(99.3 %id)
DA177102 amygdala .a 1680 to 2158 2 to 480   capped   479/479
(100 %)
0 diff
(100 %id)
BF819758 kidney_tumor .a 1686 to 1952 1 to 267       267/267
(100 %)
3 diff
(98.9 %id)
DA823399 pericardium .a 1692 to 2260 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
AW651769   .a 1704 to 2239 1 to 535       535/535
(100 %)
10 diff
(98.2 %id)
BU553724 ovary, teratocarcinoma, cell line .a 1713 to 2620 33 to 945       913/950
(96 %)
18 diff
(98.2 %id)
F00301 leg muscle, skeletal muscle .a 1725 to 1960 1 to 236       236/236
(100 %)
2 diff
(99.2 %id)
DA177025 amygdala .a 1743 to 1983 2 to 242   capped   241/241
(100 %)
1 diff
(99.6 %id)
BP339234 Spleen .a 1756 to 2330 8 to 582       575/582
(98 %)
6 diff
(99.0 %id)
DA408068 thalamus .a 1808 to 2339 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
BP256773 Kidney .a 1834 to 2415 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA959979 Spleen .a 1878 to 2418 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
AA663873 schizophrenic brain S-11 frontal lobe .a 1879 to 2347 1 to 469     Submitted on the opposite strand 469/469
(100 %)
2 diff
(99.6 %id)
BP376429 uterus .a 1880 to 2430 1 to 550       550/550
(100 %)
4 diff
(99.3 %id)
DA798344 brain .a 1881 to 2441 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA046412 bladder .a 1884 to 2453 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BP293240 lung .a 1888 to 2470 1 to 583       583/583
(100 %)
0 diff
(100 %id)
FN056537 breast carcinoma .a 1890 to 1989 1 to 100       100/100
(100 %)
0 diff
(100 %id)
EC524355 Prostate .a 1911 to 2001 1 to 91       91/91
(100 %)
0 diff
(100 %id)
DA903056   .a 1911 to 2470 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
CB999907 Pooled-Skin .a 1934 to 2636 1 to 703       703/703
(100 %)
1 diff
(99.9 %id)
BE879465 large cell carcinoma, undifferentiated, lung .a 1939 to 2617 1 to 676       676/677
(99 %)
4 diff
(99.5 %id)
TI_57215756   .a 1939 to 2801 31 to 903       873/903
(96 %)
25 diff
(97.3 %id)
BI754309 brain .a 1942 to 2801 1 to 870       870/870
(100 %)
20 diff
(97.8 %id)
BU170942 eye, retinoblastoma .a 1949 to 2821 1 to 876       876/880
(99 %)
5 diff
(99.5 %id)
BE799498 lung, small cell carcinoma .a 1960 to 2819 31 to 890       860/913
(94 %)
23 diff
(97.5 %id)
DR157893 human embryonic stem cells differentiated toan early endodermal cell type .a 1977 to 2683 1 to 707       707/707
(100 %)
1 diff
(99.9 %id)
CN359249 embryonic stem cells, cell lines H1, H7, andH9 .a 2017 to 2514 1 to 498       498/498
(100 %)
0 diff
(100 %id)
BE973632 Prostate .a 2027 to 2537 1 to 511       511/511
(100 %)
4 diff
(99.3 %id)
CF780829 Pooled Chondrosarcoma Tumor cells .a 2053 to 2825 1 to 771       771/865
(89 %)
16 diff
(98.2 %id)
CN359252 embryonic stem cells, DMSO-treated H9 cellline .a 2071 to 2694 1 to 624       624/624
(100 %)
5 diff
(99.2 %id)
BX452111 brain, fetal brain .a 2079 to 2839 1 to 759       759/959
(79 %)
14 diff
(98.6 %id)
CU456391 epidermis .a 2094 to 2898 813 to 9     Submitted on the opposite strand 805/813
(99 %)
2 diff
(99.8 %id)
CB216037 normal endometrium, late proliferativephase, cycle day 13, uterus .a 2108 to 2713 1 to 606       606/606
(100 %)
0 diff
(100 %id)
BQ316911 colon .a 2156 to 2845 12 to 700       689/700
(98 %)
9 diff
(98.8 %id)
EC441854 Prostate .a 2156 to 2252 1 to 97       97/97
(100 %)
0 diff
(100 %id)
EC558774 Prostate .a 2157 to 2252 4 to 99       96/99
(96 %)
6 diff
(94.0 %id)
CU455655 epidermis .a 2158 to 2898 749 to 9     Submitted on the opposite strand 741/749
(98 %)
6 diff
(99.2 %id)
BP369498 testis .a 2162 to 2730 1 to 569       569/569
(100 %)
0 diff
(100 %id)
TI_45379468   .a 2178 to 2974 68 to 866       799/868
(92 %)
7 diff
(99.2 %id)
BI488741 brain .a 2179 to 2974 1 to 798       798/800
(99 %)
7 diff
(99.2 %id)
EC518806 Prostate .a 2193 to 2293 1 to 101       101/101
(100 %)
0 diff
(100 %id)
EC548270 Prostate .a 2193 to 2293 1 to 101       101/101
(100 %)
0 diff
(100 %id)
EC465730 Prostate .a 2207 to 2296 1 to 90       90/92
(97 %)
0 diff
(100 %id)
EC539194 Prostate .a 2208 to 2299 1 to 92       92/92
(100 %)
0 diff
(100 %id)
BP221114 colon .a 2241 to 2810 1 to 570       570/570
(100 %)
2 diff
(99.7 %id)
BG196315   .a 2283 to 2931 1 to 648       648/774
(83 %)
16 diff
(98.0 %id)
BG218760   .a 2283 to 2912 1 to 629       629/765
(82 %)
14 diff
(98.2 %id)
BG185399   .a 2287 to 3077 9 to 795       787/795
(98 %)
23 diff
(97.2 %id)
BQ372623 prostate_tumor .a 2302 to 2559 1 to 259       259/259
(100 %)
5 diff
(98.1 %id)
CK001178 brain/CNS, Bulk tissue from Human Spinal cord .a 2308 to 2977 1 to 660       663/663
(100 %)
20 diff
(97.0 %id)
CN359247 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2313 to 3039 1 to 726       726/726
(100 %)
1 diff
(99.9 %id)
BQ372605 prostate_tumor .a 2314 to 2674 1 to 361       361/361
(100 %)
3 diff
(99.2 %id)
BY798223 eye .a 2321 to 2909 1 to 588       588/588
(100 %)
6 diff
(99.0 %id)
BP203903 coronary artery .a 2331 to 2913 1 to 583       583/583
(100 %)
7 diff
(98.8 %id)
BG427041 Kidney .a 2385 to 3109 1 to 720       720/720
(100 %)
15 diff
(98.0 %id)
N56068   .a 2402 to 2708 1 to 306       306/306
(100 %)
5 diff
(98.4 %id)
CD512480 Pooled-Skin .a 2414 to 3078 1 to 671       671/830
(80 %)
14 diff
(98.4 %id)
F13257 brain, total brain .a 2477 to 2794 1 to 318       318/318
(100 %)
0 diff
(100 %id)
F11674 brain, total brain .a 2477 to 2757 1 to 281       281/281
(100 %)
0 diff
(100 %id)
FN059718 breast carcinoma .a 2582 to 2672 91 to 1     Submitted on the opposite strand 91/91
(100 %)
0 diff
(100 %id)
BM821981 stomach .a 2616 to 3046 1 to 431       431/431
(100 %)
0 diff
(100 %id)
BM848109 myeloma .a 2733 to 2903 1 to 171       171/171
(100 %)
3 diff
(98.3 %id)
CB054583 brain, glioblastoma (pooled) .a 2777 to 3234 10 to 468       459/468
(98 %)
9 diff
(98.1 %id)
AA317135 lung .a 2921 to 3134 1 to 214       214/214
(100 %)
0 diff
(100 %id)
FN159714 breast carcinoma .a 3037 to 3137 1 to 101   tiling clone,   101/101
(100 %)
0 diff
(100 %id)
F09335 brain, total brain .a 3193 to 3390 198 to 1       198/198
(100 %)
1 diff
(99.5 %id)
DC345390 tongue, tumor tissue .b 1 to 584 1 to 585   tiling clone,   585/585
(100 %)
1 diff
(99.9 %id)
AK304374 trachea .b 18 to 3135 1 to 3118 exact tiling clone,   3118/3118
(100 %)
3 diff
(100.0 %id)
BM790190 stomach .b 2331 to 2960 1 to 630       630/630
(100 %)
0 diff
(100 %id)
BM761176 lymph node, stomach .b 2353 to 2985 1 to 633       633/633
(100 %)
0 diff
(100 %id)
BG434963 placenta .b 2371 to 3057 1 to 679       679/681
(99 %)
15 diff
(97.8 %id)
CV347097 colon_ins .b 2409 to 2982 16 to 587       572/587
(97 %)
14 diff
(97.7 %id)
L44440   .b 2557 to 2953 399 to 2       398/399
(99 %)
3 diff
(99.3 %id)
BG979787 colon_normal .b 2571 to 2948 379 to 5       375/379
(98 %)
1 diff
(99.8 %id)
N26455 melanocyte .b 2592 to 3030 1 to 450       450/457
(98 %)
17 diff
(96.3 %id)
BI063410 uterus_tumor .b 2661 to 2970 310 to 1       310/310
(100 %)
1 diff
(99.7 %id)
DW412818 Liver .b 2749 to 3054 17 to 322   tiling clone,   306/322
(95 %)
6 diff
(98.2 %id)
BF081570 amnion_normal .b 2807 to 3082 41 to 317       277/317
(87 %)
6 diff
(98.2 %id)
AA304659 aorta .b 2828 to 3065 1 to 241       241/244
(98 %)
7 diff
(97.2 %id)
DC425972 tongue, tumor tissue .b 3251 to 3582 335 to 1   tiling clone,   335/335
(100 %)
4 diff
(98.9 %id)
DA238882 brain .c 1 to 586 2 to 589   tiling clone, capped   588/588
(100 %)
3 diff
(99.5 %id)
DA405132 thalamus .c 13 to 509 2 to 500   capped   499/499
(100 %)
3 diff
(99.4 %id)
DA405579 thalamus .c 48 to 517 2 to 471   tiling clone, capped   470/470
(100 %)
0 diff
(100 %id)
CF593513 Human Placenta, placenta .c 50 to 725 21 to 698       678/961
(70 %)
13 diff
(98.7 %id)
DC307771 cerebellum .c 100 to 656 1 to 557       557/557
(100 %)
0 diff
(100 %id)
DC373990 brain .c 100 to 667 1 to 568       568/576
(98 %)
1 diff
(99.9 %id)
DC322434 brain .c 101 to 664 1 to 564       564/564
(100 %)
0 diff
(100 %id)
DC418873 trachea .c 114 to 700 1 to 587       587/587
(100 %)
0 diff
(100 %id)
DC346876 tongue, tumor tissue .c 121 to 667 1 to 548       548/548
(100 %)
1 diff
(99.9 %id)
DC422863 uterus .c 129 to 689 1 to 561       561/561
(100 %)
2 diff
(99.7 %id)
DC341286 thalamus .c 132 to 730 1 to 599       599/599
(100 %)
1 diff
(99.9 %id)
DC372005   .c 135 to 683 1 to 549       549/549
(100 %)
2 diff
(99.7 %id)
DC296258 synovial membrane tissue from rheumatioidarthritis .c 135 to 671 1 to 537       537/537
(100 %)
0 diff
(100 %id)
CN276799 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 139 to 483 4 to 348       345/348
(99 %)
6 diff
(98.3 %id)
DC422176 uterus .c 156 to 667 1 to 512       512/520
(98 %)
2 diff
(99.7 %id)
DC343858 thalamus .c 163 to 720 1 to 558       558/558
(100 %)
5 diff
(99.2 %id)
DC416015 trachea .c 208 to 745 1 to 538       538/538
(100 %)
0 diff
(100 %id)
DC348317 tongue, tumor tissue .c 210 to 671 1 to 462       462/462
(100 %)
0 diff
(100 %id)
BU538133 adenocarcinoma, cell line, breast .c 220 to 1081 1 to 881       881/941
(93 %)
22 diff
(97.7 %id)
DC372301   .c 225 to 797 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DC330818 hippocampus .c 230 to 798 1 to 572       572/572
(100 %)
5 diff
(99.2 %id)
DC349328   .c 230 to 809 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
DC367708   .c 230 to 798 1 to 569       569/569
(100 %)
0 diff
(100 %id)
DC334539 hippocampus .c 237 to 788 1 to 552       552/552
(100 %)
0 diff
(100 %id)
DC317896 amygdala .c 248 to 846 1 to 599       599/599
(100 %)
0 diff
(100 %id)
DC320494 brain .c 290 to 836 1 to 547       547/547
(100 %)
0 diff
(100 %id)
NM_001001486.1   .c 370 to 3861 1 to 3492 exact RefSeq, AAA   3492/3492
(100 %)
0 diff
(100 %id)
AY268375   .c 421 to 3487 1 to 3067 exact tiling clone,   3067/3067
(100 %)
1 diff
(100.0 %id)
AK074692 mammary gland .c 689 to 3794 1 to 3106   available from FLJ,   3106/3106
(100 %)
3 diff
(100.0 %id)
DA646905 mammary gland .c 690 to 1373 2 to 683   capped   682/688
(99 %)
4 diff
(99.5 %id)
CR596337 HeLa cells Cot 25-normalized .c 2245 to 3800 1 to 1556       1556/1556
(100 %)
0 diff
(100 %id)
BX341462   .c 2245 to 3067 1 to 823   fully sequenced,   823/823
(100 %)
11 diff
(98.7 %id)
BM692886 eye, Retina Foveal and Macular .c 2582 to 3132 1 to 551       551/551
(100 %)
0 diff
(100 %id)
CA774886 Pancreas, Purified pancreatic islet .c 2976 to 3334 14 to 371   fully sequenced,   358/371
(96 %)
7 diff
(98.2 %id)
AW771192 colon, juvenile granulosa tumor .c 2986 to 3595 610 to 1       610/610
(100 %)
16 diff
(97.4 %id)
BX400736   .c 3006 to 3800 795 to 1   fully sequenced,   795/795
(100 %)
7 diff
(99.2 %id)
AW770845 colon, juvenile granulosa tumor .c 3037 to 3595 559 to 1       559/559
(100 %)
10 diff
(98.3 %id)
CA774716 Pancreas, Purified pancreatic islet .c 3067 to 3815 749 to 1       749/749
(100 %)
3 diff
(99.6 %id)
CK005719 brain/CNS, Human Brain - Frontal Cortex .c 3118 to 3810 1 to 679       679/679
(100 %)
18 diff
(97.4 %id)
BQ775512 Bone, Human Chondrosarcoma Cell Line .c 3126 to 3828 721 to 19   AAA   703/711
(98 %)
4 diff
(99.5 %id)
BE328340 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .c 3128 to 3594 467 to 1       467/579
(80 %)
8 diff
(98.7 %id)
AW664342 2 pooled high-grade transitional celltumors, genitourinary tract .c 3160 to 3529 375 to 5       371/375
(98 %)
1 diff
(99.8 %id)
AW263305 brain, three pooled meningiomas .c 3183 to 3594 419 to 1       417/474
(87 %)
17 diff
(96.5 %id)
BM671475 eye, Retina Foveal and Macular .c 3198 to 3836 656 to 18       639/656
(97 %)
0 diff
(100 %id)
BQ774072 Bone, Human Chondrosarcoma Cell Line .c 3204 to 3861 676 to 19   tiling clone, AAA   658/658
(100 %)
0 diff
(100 %id)
DB361684 mammary gland .c 3230 to 3794 568 to 1       568/570
(99 %)
14 diff
(97.6 %id)
BE622642 melanotic melanoma, skin .c 3232 to 3819 638 to 48       591/923
(64 %)
10 diff
(99.0 %id)
CN480981 eye .c 3245 to 3861 634 to 18   AAA   617/618
(99 %)
1 diff
(99.9 %id)
BI255827 cervical carcinoma cell line, cervix .c 3264 to 3861 1 to 598   AAA   598/598
(100 %)
0 diff
(100 %id)
CA774651 Pancreas, Purified pancreatic islet .c 3273 to 3826 575 to 22   fully sequenced, AAA   554/565
(98 %)
0 diff
(100 %id)
DC307482 cerebellum .d 1 to 583 1 to 584   tiling clone,   584/584
(100 %)
1 diff
(99.9 %id)
AK299945 brain .d 7 to 3283 1 to 3277 F863L tiling clone,   3277/3277
(100 %)
2 diff
(100.0 %id)
DC321973 brain .d 7 to 563 1 to 557       557/557
(100 %)
0 diff
(100 %id)
DC378036 brain .d 7 to 563 1 to 558       558/558
(100 %)
1 diff
(99.9 %id)
AA121090 Pancreas .d 1312 to 1600 1 to 293       293/293
(100 %)
5 diff
(98.3 %id)
BF238326 B-cells, primary B-cells from tonsils (cell line) .d 2060 to 2859 1 to 791       791/968
(81 %)
41 diff
(95.8 %id)
BF967003 brain, hippocampus .d 2167 to 2984 859 to 38       822/1221
(67 %)
19 diff
(98.5 %id)
DA506680 brain .d 2204 to 2777 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
BQ224122 large cell carcinoma, lung .d 2254 to 3108 1 to 866       866/869
(99 %)
22 diff
(97.5 %id)
BE788737 large cell carcinoma, lung .d 2295 to 3020 1 to 720       720/1046
(68 %)
15 diff
(98.6 %id)
BU619966 cell lines, Chondrosarcoma .d 2372 to 3019 667 to 19   tiling clone, AAA   649/649
(100 %)
1 diff
(99.9 %id)
DA096079 cerebellum .d 2423 to 2993 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BG287318 bladder, transitional cell papilloma, cell line .d 2511 to 2898 1 to 390       390/1169
(33 %)
5 diff
(99.6 %id)
BF109122 pooled .d 2591 to 2798 208 to 1       208/208
(100 %)
0 diff
(100 %id)
AA122344 Pancreas .d 2748 to 3019 275 to 1       275/275
(100 %)
6 diff
(97.9 %id)
NM_001001487.1   .e 1 to 3462 1 to 3462 exact RefSeq, AAA   3462/3462
(100 %)
0 diff
(100 %id)
AY268374   .e 52 to 3088 1 to 3037 exact tiling clone,   3037/3037
(100 %)
1 diff
(100.0 %id)
AF225981   .f 1 to 3436 1 to 3436 I96F tiling clone, AAA   3436/3436
(100 %)
3 diff
(100.0 %id)
DB232983 trachea .f 13 to 617 2 to 607   capped   606/606
(100 %)
1 diff
(99.9 %id)
DC334420 hippocampus .f 20 to 494 1 to 477       477/477
(100 %)
3 diff
(99.4 %id)
BP200779 amygdala .f 23 to 603 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA474427   .f 23 to 572 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA707166   .f 23 to 599 2 to 578   tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
DB097760 testis .f 26 to 591 2 to 567   capped   566/567
(99 %)
2 diff
(99.7 %id)
DC416618 trachea .f 28 to 600 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
DA031743   .f 29 to 612 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA683496   .f 29 to 494 2 to 467   capped   466/466
(100 %)
0 diff
(100 %id)
DA990080 synovial membrane tissue from rheumatioidarthritis .f 29 to 559 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DB234457 trachea .f 29 to 529 2 to 504   capped   503/503
(100 %)
2 diff
(99.7 %id)
DB237207 trachea .f 29 to 513 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
DB286623 uterus .f 29 to 569 2 to 541   capped   540/540
(100 %)
2 diff
(99.7 %id)
DB081832 testis .f 50 to 594 2 to 548   capped   547/552
(99 %)
3 diff
(99.5 %id)
AA282740 germinal center B cell .f 1782 to 2158 1 to 381       381/381
(100 %)
6 diff
(98.5 %id)
TI_227712878   .f 2550 to 3410 928 to 77   AAA   852/996
(85 %)
16 diff
(98.4 %id)
AI869288 anaplastic oligodendroglioma, brain .f 2641 to 3402 762 to 1       762/806
(94 %)
22 diff
(97.3 %id)
CD367263 Alveolar Macrophage, lung .f 2704 to 3410 724 to 19   AAA   706/706
(100 %)
1 diff
(99.9 %id)
AI743045 pooled .f 2714 to 3439 732 to 7       726/732
(99 %)
10 diff
(98.7 %id)
BP424736 small intestine .f 2769 to 3263 1 to 496     Submitted on the opposite strand 496/496
(100 %)
1 diff
(99.8 %id)
CB528765 Aveolar Macrophage, lung .f 2805 to 3410 621 to 16   AAA   606/606
(100 %)
0 diff
(100 %id)
R38111 whole brain .f 2810 to 3100 336 to 46   AAA   291/291
(100 %)
5 diff
(98.3 %id)
BG191995   .f 2874 to 3439 1 to 570       570/570
(100 %)
24 diff
(95.8 %id)
BG217493   .f 2875 to 3438 1 to 565       565/565
(100 %)
5 diff
(99.2 %id)
TI_227717853   .f 2882 to 3410 632 to 104   AAA   529/1068
(49 %)
49 diff
(95.5 %id)
CU450259 epidermis .f 2888 to 3377 1 to 490       490/496
(98 %)
12 diff
(97.6 %id)
BG193032   .f 2899 to 3445 68 to 619       552/859
(64 %)
40 diff
(95.4 %id)
BG210515   .f 2899 to 3419 64 to 587       524/850
(61 %)
36 diff
(95.8 %id)
BF436458 breast, invasive ductal carcinoma, 3 pooled samples .f 2927 to 3433 508 to 2       507/508
(99 %)
0 diff
(100 %id)
AW304194 lung, two pooled squamous cell carcinomas .f 2934 to 3403 470 to 1       470/470
(100 %)
0 diff
(100 %id)
AI138879   .f 2958 to 3411 461 to 8       454/461
(98 %)
0 diff
(100 %id)
AW514315 lung, two pooled squamous cell carcinomas .f 2965 to 3432 468 to 1       468/468
(100 %)
0 diff
(100 %id)
BM686005 eye, Retina Foveal and Macular .f 2987 to 3422 7 to 442       436/442
(98 %)
6 diff
(98.7 %id)
AI138747   .f 2994 to 3411 424 to 8       417/424
(98 %)
0 diff
(100 %id)
AW276166 brain, three pooled meningiomas .f 3023 to 3436 441 to 28   AAA   414/414
(100 %)
0 diff
(100 %id)
BE868952 adenocarcinoma, colon .f 3090 to 3411 2 to 324       323/328
(98 %)
9 diff
(97.3 %id)
AI559521 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .f 3114 to 3410 297 to 1       297/297
(100 %)
0 diff
(100 %id)
AA282741 germinal center B cell .f 3135 to 3410 274 to 1       274/276
(99 %)
5 diff
(98.2 %id)
AI918810 pooled germ cell tumors .f 3144 to 3446 308 to 6       303/308
(98 %)
7 diff
(97.8 %id)
BU565310 mixed (pool of 40 RNAs) .f 3151 to 3410 1 to 260   AAA   260/260
(100 %)
3 diff
(98.9 %id)
AA905731 pooled .f 3167 to 3438 272 to 1       272/272
(100 %)
0 diff
(100 %id)
DC315921 amygdala .g 1 to 559 1 to 559   tiling clone,   559/559
(100 %)
0 diff
(100 %id)
DC347603 tongue, tumor tissue .g 1 to 581 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA318606 hippocampus .g 49 to 611 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
NM_014382.2   .g 73 to 4810 1 to 4738 exact RefSeq, AAA   4738/4738
(100 %)
0 diff
(100 %id)
AW161353 brain, frontal lobe .g 152 to 642 1 to 491   tiling clone,   491/491
(100 %)
1 diff
(99.8 %id)
AW161055 brain, frontal lobe .g 166 to 587 1 to 422       422/422
(100 %)
0 diff
(100 %id)
AW162622 brain, frontal lobe .g 2737 to 3439 708 to 7   tiling clone,   702/729
(96 %)
10 diff
(98.7 %id)
AW161811 brain, frontal lobe .g 2782 to 3439 663 to 7   tiling clone,   657/663
(99 %)
3 diff
(99.6 %id)
AF181120   .h 1 to 3637 1 to 3637 E62K A373T tiling clone,   3637/3637
(100 %)
2 diff
(100.0 %id)
AK314342   .h 52 to 2995 1 to 2944 exact tiling clone,   2944/2944
(100 %)
2 diff
(100.0 %id)
AB037768 brain .i 1 to 4074 1 to 4075 I9N P10T N11* tiling clone, available from KIAA,   4075/4075
(100 %)
1 diff
(100.0 %id)
DB448005 testis .i 28 to 175 1 to 148       148/148
(100 %)
7 diff
(95.3 %id)
DA726017   .i 108 to 675 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB094216 testis .i 147 to 700 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
DA886133   .i 157 to 723 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
CN481726 eye .i 177 to 745 1 to 569       569/569
(100 %)
0 diff
(100 %id)
DA726854   .i 199 to 761 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA758273   .i 208 to 756 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA758832   .i 209 to 750 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA030861   .i 216 to 775 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
BF669202 brain, primitive neuroectoderm .i 4050 to 4577 1 to 528   tiling clone,   528/528
(100 %)
0 diff
(100 %id)
BF669114 brain, primitive neuroectoderm .i 4050 to 4674 1 to 621   AAA   621/824
(75 %)
26 diff
(96.9 %id)
N53744 multiple sclerosis lesions .i 4141 to 4323 1 to 183       183/183
(100 %)
2 diff
(99.0 %id)
BE348462 carcinoid, lung .i 4218 to 4334 118 to 3       116/118
(98 %)
0 diff
(100 %id)
EC570282 Prostate .i 4271 to 4372 1 to 98       98/98
(100 %)
5 diff
(94.9 %id)
BF675663 Prostate .i 4274 to 4926 1 to 651   AAA   651/651
(100 %)
24 diff
(96.4 %id)
AI922486 Kidney .i 4321 to 4926 606 to 1       606/606
(100 %)
2 diff
(99.7 %id)
AI147903 uterus .i 4409 to 4926 518 to 1       518/518
(100 %)
0 diff
(100 %id)
AI811275 pooled germ cell tumors .i 4455 to 4926 472 to 1       472/472
(100 %)
0 diff
(100 %id)
AA626930   .i 4462 to 4927 469 to 4       466/469
(99 %)
0 diff
(100 %id)
AI766936 2 pooled tumors (clear cell type), Kidney .i 4475 to 4969 497 to 3       495/497
(99 %)
0 diff
(100 %id)
AI400903 Prostate .i 4477 to 4974 498 to 1   tiling clone,   498/498
(100 %)
0 diff
(100 %id)
N51919.
matches multiple genes
multiple sclerosis lesions .i 4478 to 4968 494 to 1     also hits gene C18orf25 494/495
(99 %)
3 diff
(99.4 %id)
AA620914   .i 4496 to 4926 430 to 1       430/430
(100 %)
3 diff
(99.4 %id)
AA889588   .i 4535 to 4926 404 to 14   AAA   391/391
(100 %)
1 diff
(99.8 %id)
AI623532 serous papillary carcinoma, high grade, 2pooled tumors, uterus .i 4554 to 4948 412 to 18   AAA   395/395
(100 %)
0 diff
(100 %id)
AW468496 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .i 4560 to 4974 420 to 6       415/420
(98 %)
0 diff
(100 %id)
AA883675 pooled .i 4567 to 4926 360 to 1       360/360
(100 %)
0 diff
(100 %id)
BQ220831 melanotic melanoma, skin .i 4596 to 5019 1 to 424   AAA   424/424
(100 %)
0 diff
(100 %id)
AA767461 germinal center B cell .i 4606 to 4927 330 to 9       322/330
(97 %)
0 diff
(100 %id)
AA759228   .i 4617 to 4969 354 to 2       353/354
(99 %)
0 diff
(100 %id)
CN359254 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .i 4625 to 4926 1 to 302   AAA   302/302
(100 %)
0 diff
(100 %id)
BF445466 Prostate .i 4640 to 4926 287 to 1       287/287
(100 %)
0 diff
(100 %id)
AI199295 Prostate .i 4651 to 4927 278 to 2       277/278
(99 %)
0 diff
(100 %id)
AW468691 pooled .i 4663 to 5060 402 to 5   tiling clone,   398/402
(99 %)
0 diff
(100 %id)
AA608731 lung, lung carcinoma .i 4669 to 4926 271 to 14   AAA   258/258
(100 %)
0 diff
(100 %id)
BX389410 Neuroblastoma Cot 10-normalized .i 4674 to 4927 1 to 254       254/254
(100 %)
0 diff
(100 %id)
EH349908   .i 4759 to 4836 1 to 78       78/78
(100 %)
0 diff
(100 %id)
AI174469   .i 4796 to 4967 195 to 25   AAA   171/199
(85 %)
18 diff
(91.0 %id)
AA328823   .i 4808 to 4967 1 to 160       160/160
(100 %)
2 diff
(98.8 %id)
AW958095   .i 4820 to 4967 1 to 148   AAA   148/148
(100 %)
0 diff
(100 %id)
AW961407   .i 4820 to 4967 1 to 148   AAA   148/148
(100 %)
1 diff
(99.4 %id)
EC513331 Prostate .i 4822 to 4923 112 to 7       106/112
(94 %)
0 diff
(100 %id)
F28393 pectoral muscle (after mastectomy) .i 4841 to 4969 1 to 129       129/136
(94 %)
2 diff
(98.6 %id)
DC345627 tongue, tumor tissue .j 1 to 580 1 to 580   tiling clone,   580/580
(100 %)
0 diff
(100 %id)
DC408115 thymus .j 8 to 493 1 to 486       486/486
(100 %)
1 diff
(99.8 %id)
DC381404 placenta .j 9 to 549 1 to 541       541/541
(100 %)
0 diff
(100 %id)
CN359246 embryonic stem cells, cell lines H1, H7, andH9 .j 33 to 767 1 to 735       735/735
(100 %)
0 diff
(100 %id)
DC369650   .j 36 to 609 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
BP279222   .j 106 to 687 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DC331199 hippocampus .j 108 to 672 1 to 565       565/565
(100 %)
0 diff
(100 %id)
BP281419 bone marrow .j 112 to 693 1 to 581       581/586
(99 %)
5 diff
(99.2 %id)
AF189723   .j 118 to 4829 1 to 4711 exact tiling clone, AAA   4711/4711
(100 %)
3 diff
(100.0 %id)
AK304175 trachea .j 145 to 3525 1 to 3381 D143A K239I     3381/3381
(100 %)
2 diff
(100.0 %id)
AK001684   .j 1342 to 3682 1 to 2341   available from FLJ,   2341/2341
(100 %)
2 diff
(100.0 %id)
AU133007   .j 1343 to 2163 2 to 828   capped   827/832
(99 %)
13 diff
(98.5 %id)
AJ010953   .j 1540 to 3673 1 to 2134   AAA   2134/2134
(100 %)
1 diff
(100.0 %id)
DA830113 placenta .j 1616 to 2373 2 to 765   capped   764/809
(94 %)
17 diff
(97.9 %id)
BG680481 skin, squamous cell carcinoma .j 2351 to 3278 1 to 932       932/932
(100 %)
24 diff
(97.5 %id)
BX098761 melanocyte .j 2469 to 3258 1 to 791       791/791
(100 %)
5 diff
(99.4 %id)
N31343 melanocyte .j 2470 to 2948 1 to 480       480/480
(100 %)
8 diff
(98.4 %id)
CF618761 Pooled Chondrosarcoma Tumor cells .j 2560 to 3359 1 to 807       807/888
(90 %)
17 diff
(98.1 %id)
CF618760 Pooled Chondrosarcoma Tumor cells .j 2569 to 3353 33 to 835       803/932
(86 %)
37 diff
(96.1 %id)
BF971574 leiomyosarcoma cell line, uterus .j 2578 to 3419 1 to 822       822/925
(88 %)
29 diff
(96.9 %id)
AL598907   .j 2645 to 3254 1 to 606       606/606
(100 %)
4 diff
(99.4 %id)
N40047 melanocyte .j 2692 to 3148 1 to 459       459/467
(98 %)
8 diff
(98.3 %id)
AA401314.
matches multiple genes
  .j 2722 to 3200 1 to 479     also hits gene vorto 479/479
(100 %)
0 diff
(100 %id)
AA401315   .j 2722 to 3193 1 to 472       472/472
(100 %)
0 diff
(100 %id)
DA311837 hippocampus .j 2735 to 3279 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
TI_158432734   .j 2752 to 3457 796 to 87   AAA   710/956
(74 %)
14 diff
(98.6 %id)
BM718330 eye, fetal eye .j 2773 to 2992 1 to 220   fully sequenced,   220/220
(100 %)
0 diff
(100 %id)
BM313187 Pancreas, Purified pancreatic islet .j 2780 to 3324 11 to 555       545/555
(98 %)
6 diff
(99.0 %id)
BM353862 Pancreas, Purified pancreatic islet .j 2780 to 3407 10 to 637       628/637
(98 %)
7 diff
(99.0 %id)
CB957651 Pooled-Glandular .j 2785 to 3450 1 to 676       676/791
(85 %)
17 diff
(97.9 %id)
CK821499 Pancreas, Purified pancreatic islet .j 2817 to 3309 1 to 493     Submitted on the opposite strand 493/493
(100 %)
0 diff
(100 %id)
BI919094 brain .j 2818 to 3376 1 to 560       560/824
(67 %)
6 diff
(99.3 %id)
TI_57242019   .j 2818 to 3376 1 to 560       560/824
(67 %)
6 diff
(99.3 %id)
CR615088 thymus .j 2843 to 3674 1 to 832       832/832
(100 %)
0 diff
(100 %id)
BX456322 thymus .j 2843 to 3674 1 to 832   fully sequenced,   832/832
(100 %)
4 diff
(99.6 %id)
DB243279 stomach, tumor tissue .j 2848 to 3413 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CF528608 placenta .j 2869 to 3457 606 to 18   AAA   589/589
(100 %)
1 diff
(99.9 %id)
BX456321 thymus .j 2870 to 3644 777 to 1   fully sequenced,   777/777
(100 %)
4 diff
(99.5 %id)
AW194980 Kidney .j 2881 to 3671 795 to 1       792/795
(99 %)
19 diff
(97.7 %id)
AI344321 colon, colon tumor, RER+ .j 2885 to 3673 811 to 21   AAA   791/791
(100 %)
18 diff
(97.8 %id)
BE695903 colon .j 2890 to 3514 25 to 646       622/655
(94 %)
6 diff
(99.1 %id)
BX413402 brain, fetal brain .j 2900 to 3660 775 to 12       764/902
(84 %)
0 diff
(100 %id)
TI_149311174   .j 2900 to 3673 865 to 94   AAA   772/973
(79 %)
14 diff
(98.6 %id)
AW103951 ovary, tumor, 5 pooled (see description) .j 2912 to 3457 546 to 1       546/546
(100 %)
29 diff
(94.7 %id)
AA377492 synovial membrane .j 2928 to 3303 1 to 377       377/379
(99 %)
4 diff
(99.0 %id)
AW960568   .j 2929 to 3514 1 to 588       588/588
(100 %)
12 diff
(98.0 %id)
AA136807 uterus .j 2931 to 3227 1 to 301       301/301
(100 %)
7 diff
(97.7 %id)
TI_227714316   .j 2933 to 3682 841 to 97   AAA   745/955
(78 %)
25 diff
(97.4 %id)
CB161528 Liver .j 2951 to 3582 1 to 632       632/632
(100 %)
0 diff
(100 %id)
TI_149307972   .j 2958 to 3682 809 to 85   AAA   725/946
(76 %)
2 diff
(99.8 %id)
BU741919 eye, fetal eye .j 2962 to 3676 733 to 19   fully sequenced, AAA   715/715
(100 %)
1 diff
(99.9 %id)
CB241158 Human Lung Epithelial cells, lung .j 2967 to 3682 734 to 19   AAA   716/716
(100 %)
0 diff
(100 %id)
BF817686 colon_ins .j 2974 to 3337 18 to 379       362/381
(95 %)
5 diff
(98.7 %id)
BM354050 Islets of Langerhans, Pancreas .j 2976 to 3555 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BF814320 colon_ins .j 2978 to 3337 363 to 8     Submitted on the opposite strand 356/390
(91 %)
0 diff
(100 %id)
BF815182 colon_ins .j 2978 to 3330 361 to 13     Submitted on the opposite strand 349/433
(80 %)
0 diff
(100 %id)
BF815188 colon_ins .j 2978 to 3322 20 to 363       344/363
(94 %)
6 diff
(98.4 %id)
BF815658 colon_ins .j 2978 to 3337 371 to 10     Submitted on the opposite strand 362/391
(92 %)
0 diff
(100 %id)
BF815971 colon_ins .j 2978 to 3337 370 to 10     Submitted on the opposite strand 361/398
(90 %)
0 diff
(100 %id)
BF816840 colon_ins .j 2978 to 3341 363 to 3     Submitted on the opposite strand 361/464
(77 %)
0 diff
(100 %id)
BF816868 colon_ins .j 2978 to 3333 19 to 378       360/391
(92 %)
18 diff
(95.4 %id)
BF815976 colon_ins .j 2979 to 3341 363 to 3     Submitted on the opposite strand 361/363
(99 %)
0 diff
(100 %id)
BF814570 colon_ins .j 2980 to 3337 20 to 376       357/389
(91 %)
5 diff
(98.8 %id)
BF814791 colon_ins .j 2980 to 3540 21 to 581       561/581
(96 %)
6 diff
(99.0 %id)
BF817808 colon_ins .j 2980 to 3337 20 to 375       356/379
(93 %)
5 diff
(98.7 %id)
BU934804 mixed (pool of 40 RNAs) .j 2991 to 3674 1 to 686       686/827
(82 %)
5 diff
(99.4 %id)
AA758230   .j 2994 to 3458 470 to 6       465/470
(98 %)
0 diff
(100 %id)
BI754320 brain .j 3000 to 3671 1 to 676       676/806
(83 %)
18 diff
(97.8 %id)
TI_57215767   .j 3000 to 3671 36 to 711       676/841
(80 %)
18 diff
(97.9 %id)
AI189006 placenta .j 3006 to 3458 453 to 1       453/453
(100 %)
0 diff
(100 %id)
CB144502 Liver .j 3009 to 3619 1 to 611       611/611
(100 %)
0 diff
(100 %id)
BU686865 lung, Primary Lung Epithelial Cells .j 3015 to 3682 686 to 19   AAA   668/668
(100 %)
1 diff
(99.9 %id)
BU162073 eye, retinoblastoma .j 3030 to 3939 24 to 939       916/941
(97 %)
51 diff
(94.6 %id)
CD365020 Alveolar Macrophage, lung .j 3061 to 3682 640 to 19   AAA   622/622
(100 %)
7 diff
(98.9 %id)
AW971727   .j 3068 to 3541 113 to 586       474/586
(80 %)
6 diff
(99.0 %id)
AA469449   .j 3068 to 3420 9 to 362       354/362
(97 %)
6 diff
(98.4 %id)
N52724 multiple sclerosis lesions .j 3071 to 3374 8 to 312       305/312
(97 %)
6 diff
(98.1 %id)
TI_149279971   .j 3086 to 3678 644 to 54       591/1152
(51 %)
0 diff
(100 %id)
BM969764 lung, Primary Lung Epithelial Cells .j 3086 to 3678 604 to 14       591/612
(96 %)
0 diff
(100 %id)
FN102862 breast carcinoma .j 3104 to 3197 93 to 1     Submitted on the opposite strand 93/93
(100 %)
1 diff
(99.0 %id)
AI299825 carcinoid, lung .j 3105 to 3557 453 to 1       453/453
(100 %)
1 diff
(99.8 %id)
AU154426   .j 3106 to 3682 575 to 1       575/575
(100 %)
9 diff
(98.5 %id)
H99346.
matches multiple genes
melanocyte .j 3113 to 3559 460 to 1     also hits gene PHACTR2andLTV1andC6orf94 460/460
(100 %)
18 diff
(96.1 %id)
DB375139 placenta .j 3113 to 3676 555 to 1       555/569
(97 %)
16 diff
(97.2 %id)
CD000720 Pooled-Skin .j 3119 to 3825 1 to 711       711/740
(96 %)
5 diff
(99.4 %id)
BM353587 Pancreas, Purified pancreatic islet .j 3125 to 3685 562 to 2       561/562
(99 %)
0 diff
(100 %id)
BF589126 pooled .j 3128 to 3678 555 to 5       551/555
(99 %)
0 diff
(100 %id)
CN359253 embryonic stem cells, cell lines H1, H7, andH9 .j 3132 to 3576 1 to 444       444/444
(100 %)
1 diff
(99.8 %id)
CK821500 Pancreas, Purified pancreatic islet .j 3142 to 3682 554 to 14   AAA Submitted on the opposite strand 541/541
(100 %)
0 diff
(100 %id)
BU689233 lung .j 3143 to 3673 549 to 19   AAA   531/531
(100 %)
1 diff
(99.9 %id)
AV749577 Pituitary .j 3144 to 3652 1 to 503       503/521
(96 %)
7 diff
(98.7 %id)
F01166 leg muscle, skeletal muscle .j 3145 to 3457 313 to 1       313/318
(98 %)
0 diff
(100 %id)
AI982710 brain, three pooled meningiomas .j 3153 to 3682 547 to 17   AAA   531/531
(100 %)
7 diff
(98.7 %id)
AI970794 normal prostate, Prostate .j 3154 to 3683 528 to 1       528/528
(100 %)
5 diff
(99.1 %id)
N27113 melanocyte .j 3158 to 3559 405 to 1       405/405
(100 %)
3 diff
(99.3 %id)
AA614183   .j 3162 to 3457 8 to 303   AAA   296/303
(97 %)
6 diff
(98.1 %id)
BM312891 Pancreas, Purified pancreatic islet .j 3169 to 3684 516 to 1       516/516
(100 %)
0 diff
(100 %id)
BU188061 melanotic melanoma, skin .j 3176 to 4039 1 to 874   tiling clone,   874/876
(99 %)
17 diff
(98.1 %id)
DA142959 alzheimer cortex .j 3178 to 3761 2 to 586   capped   585/585
(100 %)
7 diff
(98.9 %id)
AA467778   .j 3180 to 3482 294 to 1       294/330
(89 %)
13 diff
(96.1 %id)
AI290621 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 3182 to 3673 494 to 1       494/494
(100 %)
2 diff
(99.6 %id)
AW593616 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .j 3182 to 3676 508 to 14   AAA   495/495
(100 %)
2 diff
(99.6 %id)
AI208492   .j 3188 to 3458 274 to 4       271/274
(98 %)
0 diff
(100 %id)
AI041491 parathyroid gland, parathyroid tumor .j 3189 to 3678 495 to 6       490/495
(98 %)
0 diff
(100 %id)
AI566521 adenocarcinoma, Pancreas .j 3189 to 3674 487 to 1       487/487
(100 %)
1 diff
(99.8 %id)
BF476537 Prostate .j 3189 to 3671 486 to 4       483/486
(99 %)
0 diff
(100 %id)
AI434874 Kidney .j 3197 to 3676 480 to 1       480/480
(100 %)
0 diff
(100 %id)
AI625865 Kidney .j 3197 to 3676 503 to 24   AAA   480/480
(100 %)
1 diff
(99.8 %id)
N21388 melanocyte .j 3208 to 3682 486 to 1       486/491
(98 %)
17 diff
(96.6 %id)
AI817795 normal prostate, Prostate .j 3214 to 3678 469 to 4       466/469
(99 %)
0 diff
(100 %id)
FN152485 breast carcinoma .j 3227 to 3287 1 to 59       59/71
(83 %)
2 diff
(97.2 %id)
AA714986 Ewing's sarcoma .j 3227 to 3608 395 to 12       384/398
(96 %)
0 diff
(100 %id)
AI990246 pooled germ cell tumors .j 3229 to 3677 449 to 1       449/449
(100 %)
0 diff
(100 %id)
AI926242 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .j 3247 to 3674 430 to 1       430/430
(100 %)
4 diff
(99.1 %id)
R52284 breast .j 3249 to 3602 1 to 359       359/359
(100 %)
5 diff
(98.7 %id)
BQ014610 Chondrosarcoma, Left Pubic Bone .j 3253 to 3673 438 to 19   AAA   420/423
(99 %)
6 diff
(98.6 %id)
AA400271   .j 3257 to 3673 417 to 1       417/417
(100 %)
2 diff
(99.6 %id)
AI203327 pooled germ cell tumors .j 3271 to 3685 418 to 3       416/418
(99 %)
0 diff
(100 %id)
CB050007 Prostate .j 3271 to 3676 10 to 414   fully sequenced, AAA   405/414
(97 %)
8 diff
(98.1 %id)
AA136709 uterus .j 3281 to 3662 383 to 1       383/383
(100 %)
1 diff
(99.8 %id)
AA905174 pooled .j 3282 to 3673 392 to 1       392/392
(100 %)
0 diff
(100 %id)
N68998 multiple sclerosis lesions .j 3288 to 3557 274 to 1       274/274
(100 %)
6 diff
(97.9 %id)
BM931557 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .j 3290 to 3664 1 to 375   AAA   375/384
(97 %)
5 diff
(98.7 %id)
AA635589 normal prostate, Prostate .j 3296 to 3620 325 to 1       325/325
(100 %)
0 diff
(100 %id)
BF970685 adrenal cortex carcinoma, cell line, adrenal gland .j 3300 to 3664 1 to 363   AAA   363/372
(97 %)
2 diff
(99.5 %id)
AW995523 breast_normal .j 3316 to 3677 1 to 360       360/360
(100 %)
4 diff
(98.9 %id)
CN359245 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .j 3316 to 3685 1 to 371       371/372
(99 %)
6 diff
(98.4 %id)
BF197098 pooled .j 3319 to 3678 365 to 6       360/365
(98 %)
0 diff
(100 %id)
AW995466 breast_normal .j 3324 to 3677 1 to 361       361/361
(100 %)
18 diff
(95.1 %id)
BP397037 pancreatic islet .j 3324 to 3608 1 to 287     Submitted on the opposite strand 287/287
(100 %)
3 diff
(99.0 %id)
CB050006 Prostate .j 3324 to 3676 379 to 28   fully sequenced, AAA   352/352
(100 %)
1 diff
(99.8 %id)
BF154433 breast_normal .j 3326 to 3677 1 to 352       352/352
(100 %)
1 diff
(99.8 %id)
AW339852 pooled .j 3327 to 3675 348 to 1       348/348
(100 %)
1 diff
(99.8 %id)
BF033598 adenocarcinoma, ovary .j 3329 to 3863 1 to 538       538/539
(99 %)
5 diff
(99.1 %id)
AI701104 carcinoid, lung .j 3333 to 3878 547 to 2       546/547
(99 %)
0 diff
(100 %id)
BE045555 carcinoid, lung .j 3338 to 3878 542 to 2       541/542
(99 %)
0 diff
(100 %id)
AI434558 lymph node, lymphoma, follicular mixed small and largecell .j 3351 to 3673 323 to 1       323/323
(100 %)
0 diff
(100 %id)
AA781063 parathyroid gland, parathyroid tumor .j 3368 to 3673 316 to 11   AAA   306/306
(100 %)
0 diff
(100 %id)
AA860672 parathyroid gland, parathyroid tumor .j 3368 to 3673 316 to 11   AAA   306/306
(100 %)
0 diff
(100 %id)
AA830536 germinal center B cell .j 3370 to 3673 345 to 42   AAA   304/304
(100 %)
2 diff
(99.4 %id)
AI687944 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .j 3372 to 3670 362 to 64   AAA   299/305
(98 %)
0 diff
(100 %id)
AW015496   .j 3374 to 3560 204 to 18   AAA   187/190
(98 %)
2 diff
(99.0 %id)
AW518858 adenocarcinoma, Pancreas .j 3376 to 3670 311 to 17   AAA   295/301
(98 %)
0 diff
(100 %id)
AU185962 skin .j 3382 to 3675 1 to 294       294/294
(100 %)
1 diff
(99.7 %id)
BE536835 cervix .j 3385 to 3452 1 to 67       67/67
(100 %)
1 diff
(98.6 %id)
AW276289 lung, two pooled squamous cell carcinomas .j 3387 to 3666 281 to 3       279/294
(94 %)
0 diff
(100 %id)
AV751433 Pituitary .j 3387 to 3653 1 to 261       261/263
(99 %)
9 diff
(96.6 %id)
AI636039 Kidney .j 3389 to 3650 1 to 262     Submitted on the opposite strand 262/262
(100 %)
3 diff
(98.9 %id)
AA854353 parathyroid gland, parathyroid tumor .j 3393 to 3657 1 to 265     Submitted on the opposite strand 265/265
(100 %)
2 diff
(99.3 %id)
AW853100 colon .j 3395 to 3957 569 to 10       560/569
(98 %)
0 diff
(100 %id)
BI021536 marrow .j 3400 to 3685 1 to 283       283/340
(83 %)
9 diff
(97.4 %id)
TI_57215110   .j 3406 to 4153 27 to 773       747/774
(96 %)
6 diff
(99.3 %id)
BI752158 brain .j 3410 to 4153 1 to 743       743/744
(99 %)
4 diff
(99.5 %id)
AI934386 Kidney .j 3421 to 3937 515 to 1       515/515
(100 %)
3 diff
(99.5 %id)
AI400410 Prostate .j 3434 to 3860 442 to 16   AAA   427/427
(100 %)
0 diff
(100 %id)
AA525819 ovary .j 3447 to 3673 1 to 227   AAA   227/227
(100 %)
6 diff
(97.4 %id)
BF222527 Prostate .j 3448 to 3678 232 to 2       231/232
(99 %)
0 diff
(100 %id)
BF221739 Prostate .j 3458 to 3678 223 to 3       221/231
(95 %)
0 diff
(100 %id)
AA523694 ovary .j 3466 to 3673 1 to 208   AAA   208/208
(100 %)
0 diff
(100 %id)
EC451214 Prostate .j 3476 to 3576 1 to 97       97/98
(98 %)
5 diff
(94.9 %id)
AI685731 Prostate .j 3499 to 3856 372 to 15   AAA   358/358
(100 %)
0 diff
(100 %id)
BM984315 lung .j 3505 to 3673 187 to 19   AAA   169/189
(89 %)
4 diff
(97.9 %id)
CB135168 Liver .j 3512 to 3857 364 to 18   AAA Submitted on the opposite strand 347/347
(100 %)
10 diff
(97.2 %id)
AW295210   .j 3520 to 3682 180 to 18   AAA   163/163
(100 %)
3 diff
(98.2 %id)
CN359248 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .j 3521 to 3673 5 to 157   AAA   153/157
(97 %)
6 diff
(96.2 %id)
AA242841 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 3568 to 4054 1 to 486       486/486
(100 %)
2 diff
(99.6 %id)
AI699561 pooled germ cell tumors .j 3607 to 3856 262 to 11   AAA   252/252
(100 %)
2 diff
(99.3 %id)
AA836980 Kidney, kidney tumor .j 3626 to 4075 1 to 450       450/450
(100 %)
0 diff
(100 %id)
EC572517 Prostate .j 3662 to 3787 1 to 126       126/126
(100 %)
4 diff
(96.9 %id)
BF680375 Prostate .j 3677 to 4330 1 to 648       648/859
(75 %)
26 diff
(97.0 %id)
AI811007 Prostate .j 3756 to 3932 191 to 15   AAA   177/177
(100 %)
2 diff
(98.9 %id)
BE568290 bladder, carcinoma, cell line .j 3762 to 4440 1 to 672       672/741
(90 %)
22 diff
(97.1 %id)
CR620213 Neuroblastoma Cot 10-normalized .j 3809 to 4789 1 to 981   tiling clone,   981/981
(100 %)
0 diff
(100 %id)
BX393649 Neuroblastoma Cot 10-normalized .j 3809 to 4658 1 to 850       850/850
(100 %)
5 diff
(99.5 %id)
AA242759 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 4341 to 4789 449 to 1       449/450
(99 %)
2 diff
(99.6 %id)
TI_57234279   .k 1 to 789 37 to 828   tiling clone,   792/828
(95 %)
10 diff
(98.8 %id)
BC028139 Blood, adult leukocytes .k 2 to 3354 1 to 3353 exact tiling clone, available from MGC, AAA   3353/3353
(100 %)
0 diff
(100 %id)
BI907547 leukocyte .k 2 to 789 1 to 791       791/791
(100 %)
10 diff
(98.8 %id)
BP200717 amygdala .k 10 to 594 1 to 583       585/583
(100 %)
4 diff
(99.4 %id)
DA220422 brain .k 10 to 570 2 to 563   capped   562/562
(100 %)
4 diff
(99.3 %id)
DA183202 amygdala .k 11 to 552 2 to 543   capped   542/552
(98 %)
1 diff
(99.9 %id)
DA186617 amygdala .k 11 to 544 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DA192854 amygdala .k 11 to 533 2 to 524   capped   523/523
(100 %)
0 diff
(100 %id)
DA231162 brain .k 11 to 503 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
DA391310 thalamus .k 11 to 584 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA397902 thalamus .k 11 to 597 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA754907   .k 11 to 549 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA756852   .k 11 to 558 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB152601 thymus .k 11 to 606 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA185245 amygdala .k 13 to 552 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA314720 hippocampus .k 13 to 552 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA725698   .k 13 to 572 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA805063 brain .k 13 to 552 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA902789   .k 13 to 574 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB077904 testis .k 13 to 581 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB232909 trachea .k 13 to 618 2 to 607   capped   606/606
(100 %)
1 diff
(99.9 %id)
NM_001001485.1   .k 14 to 3380 1 to 3367 exact RefSeq, AAA   3367/3367
(100 %)
0 diff
(100 %id)
CN359251 embryonic stem cells, cell lines H1, H7, andH9 .k 77 to 728 1 to 652       652/652
(100 %)
0 diff
(100 %id)
DA782023 brain .k 82 to 539 2 to 460   capped   459/459
(100 %)
3 diff
(99.4 %id)
DA249744 brain .k 87 to 657 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DN991541 brain, whole brain .k 113 to 726 1 to 613       613/613
(100 %)
9 diff
(98.6 %id)
DA399236 thalamus .k 130 to 661 2 to 534   capped   533/537
(99 %)
3 diff
(99.5 %id)
CN359244 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .k 154 to 852 1 to 699       699/699
(100 %)
0 diff
(100 %id)
BQ722178 sympathetic trunk .k 168 to 723 1 to 565       565/1003
(56 %)
15 diff
(98.6 %id)
CN413087 embryonic stem cells, cell lines H1, H7, andH9 .l 1 to 409 5 to 412   tiling clone,   412/412
(100 %)
3 diff
(99.3 %id)
DC343471 thalamus .l 351 to 894 1 to 544   tiling clone,   544/544
(100 %)
0 diff
(100 %id)
DC300722 bladder .l 370 to 946 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC369496   .l 381 to 937 1 to 557       557/557
(100 %)
0 diff
(100 %id)
CN359256 embryonic stem cells, cell lines H1, H7, andH9 .l 402 to 680 1 to 280       280/291
(96 %)
1 diff
(99.7 %id)
AF181121   .l 438 to 3574 1 to 3137 E62K A373T tiling clone,   3137/3137
(100 %)
3 diff
(100.0 %id)
DA757884   .l 455 to 955 2 to 502   capped   501/501
(100 %)
1 diff
(99.9 %id)
DB216569 trachea .l 479 to 953 2 to 476   capped   475/475
(100 %)
1 diff
(99.8 %id)
DA034084   .l 484 to 1016 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
TI_1948087545   .m 1 to 763 135 to 903   tiling clone,   769/1472
(52 %)
24 diff
(98.4 %id)
TI_1948087546   .m 2070 to 2672 733 to 128   tiling clone,   606/1498
(40 %)
19 diff
(98.8 %id)
DB155159 thymus .n 1 to 589 2 to 590   tiling clone, capped   589/589
(100 %)
0 diff
(100 %id)
BX503577   .n 176 to 878 1 to 703       703/703
(100 %)
2 diff
(99.8 %id)
BX485902   .n 372 to 1021 1 to 651   tiling clone,   651/651
(100 %)
2 diff
(99.7 %id)
AA489881   .n 794 to 1281 1 to 488       488/488
(100 %)
1 diff
(99.8 %id)
AI824793 pooled germ cell tumors .n 811 to 1107 297 to 1       297/297
(100 %)
0 diff
(100 %id)
CR742071 liver and spleen .n 863 to 1568 1 to 706   tiling clone,   706/706
(100 %)
0 diff
(100 %id)
AL038449 Kidney .n 1278 to 1425 1 to 148       148/150
(98 %)
1 diff
(99.4 %id)
CA392601 eye, RPE/choroid .n 1382 to 2000 1 to 619   tiling clone,   619/619
(100 %)
3 diff
(99.6 %id)
EH613324 Prostate .n 1671 to 1772 1 to 102   tiling clone,   102/102
(100 %)
0 diff
(100 %id)
FN147028 breast carcinoma .n 1851 to 1962 1 to 115       115/115
(100 %)
3 diff
(97.4 %id)
AU185980 skin .n 1852 to 2049 198 to 1   tiling clone,   198/198
(100 %)
0 diff
(100 %id)
FN060294 breast carcinoma .n 1965 to 2079 1 to 116   tiling clone,   116/116
(100 %)
2 diff
(98.3 %id)
BX504306   .n 2065 to 2380 9 to 322   tiling clone,   314/322
(97 %)
6 diff
(98.2 %id)
AA176897   .n 2149 to 2353 1 to 205       205/205
(100 %)
1 diff
(99.6 %id)
AA179039   .n 2149 to 2512 1 to 370   tiling clone,   370/375
(98 %)
12 diff
(96.8 %id)
BU838377 dorsal root ganglia .n 2153 to 3074 1 to 921   tiling clone,   921/921
(100 %)
10 diff
(99.0 %id)
AV714560   .n 2260 to 2749 1 to 492       492/492
(100 %)
25 diff
(95.0 %id)
CN411960 embryonic stem cells, cell lines H1, H7, andH9 .n 2614 to 3241 1 to 628   tiling clone,   628/628
(100 %)
0 diff
(100 %id)
AA465423 germinal center B cell .n 2643 to 3029 1 to 387       387/387
(100 %)
0 diff
(100 %id)
TI_151728393   .n 2944 to 3741 850 to 56       795/1000
(79 %)
0 diff
(100 %id)
BM729057 eye, fetal eye .n 2951 to 3541 1 to 591       591/591
(100 %)
6 diff
(99.0 %id)
BG619459 placenta .n 2994 to 3702 1 to 708       708/708
(100 %)
7 diff
(99.1 %id)
AW978200   .n 3015 to 3722 709 to 1     Submitted on the opposite strand 709/718
(98 %)
13 diff
(98.2 %id)
AL038450 Kidney .n 3090 to 3720 656 to 23   AAA   634/634
(100 %)
6 diff
(99.1 %id)
AL707651 human skeletal muscle .n 3136 to 3675 1 to 539       539/539
(100 %)
2 diff
(99.7 %id)
AI684566 pooled .n 3160 to 3724 565 to 1   tiling clone,   565/565
(100 %)
0 diff
(100 %id)
BX645716   .n 3187 to 3746 1 to 561       561/561
(100 %)
1 diff
(99.9 %id)
AA491457   .n 3229 to 3725 497 to 1       497/497
(100 %)
2 diff
(99.6 %id)
AI005269 pooled .n 3242 to 3724 483 to 1       483/483
(100 %)
0 diff
(100 %id)
AI377928 pooled .n 3273 to 3724 452 to 1       452/455
(99 %)
0 diff
(100 %id)
AW937573 denis_drash .n 3278 to 3574 1 to 297       297/297
(100 %)
15 diff
(95.0 %id)
AA805447 germinal center B cell .n 3290 to 3733 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
N66939 liver and spleen .n 3306 to 3732 429 to 1       429/434
(98 %)
4 diff
(99.1 %id)
AA176686   .n 3316 to 3726 412 to 1       412/412
(100 %)
4 diff
(99.1 %id)
AW472717 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .n 3338 to 3729 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
AA176900   .n 3405 to 3725 321 to 1       321/321
(100 %)
6 diff
(98.2 %id)
AI969917 Prostate .n 3464 to 3720 257 to 1       257/257
(100 %)
3 diff
(98.9 %id)
N64278 cochlea, ear .n 3533 to 3724 193 to 1       193/198
(97 %)
1 diff
(99.5 %id)
DB093592 testis .n 3617 to 4171 2 to 556   tiling clone, capped   555/555
(100 %)
1 diff
(99.9 %id)
AB209265 brain .n 3910 to 7484 1 to 3575 exact tiling clone,   3575/3575
(100 %)
0 diff
(100 %id)
DA468828   .n 4399 to 4961 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DB314715   .n 6915 to 7481 567 to 1       567/567
(100 %)
1 diff
(99.9 %id)
DB341591 testis .n 6948 to 7490 542 to 1   tiling clone,   542/542
(100 %)
1 diff
(99.9 %id)
DA287030 corpus callosum .o 1 to 562 2 to 563   tiling clone, capped   562/562
(100 %)
1 diff
(99.9 %id)
BQ327503 kidney_tumor .o 507 to 1025 14 to 529   tiling clone,   516/529
(97 %)
10 diff
(98.2 %id)
BM803040 duodenal adenocarcinoma, cell line, small intestine .o 663 to 1612 31 to 998   tiling clone,   968/1099
(88 %)
42 diff
(96.2 %id)
CN359255 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .p 1 to 789 1 to 789 T3R tiling clone,   789/789
(100 %)
6 diff
(99.3 %id)
BX461115 brain, fetal brain .q 1 to 655 1 to 656   tiling clone,   656/691
(94 %)
6 diff
(99.2 %id)
DA303781 hippocampus .q 578 to 1136 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
AL601800   .q 1033 to 1701 1 to 669   tiling clone,   669/669
(100 %)
2 diff
(99.8 %id)
CN359829 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .r-u 13 to 683 1 to 668   tiling clone,   668/668
(100 %)
4 diff
(99.5 %id)
AL833453 human fetal kidney .r-u 504 to 4215 1 to 3712 exact tiling clone, available from DKFZ, AAA   3712/3712
(100 %)
4 diff
(99.9 %id)
DB535476.
matches multiple genes
hippocampus .r-u 1409 to 2121 712 to 2     also hits gene ASTE1 711/712
(99 %)
0 diff
(100 %id)
BP398842 pancreatic islet .r-u 1412 to 1797 386 to 1       386/386
(100 %)
0 diff
(100 %id)
DA518767 brain .r-u 1729 to 2292 2 to 565   tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
FN110008 breast carcinoma .r-u 2086 to 2181 1 to 101       101/106
(95 %)
6 diff
(94.4 %id)
AL134044 brain .r-u 2314 to 2581 30 to 297   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 268/333
(80 %)
3 diff
(99.1 %id)
AW593927 pooled germ cell tumors .r-u 3510 to 3985 484 to 8   tiling clone,   477/484
(98 %)
0 diff
(100 %id)
BE672946 pooled germ cell tumors .r-u 3528 to 3985 466 to 8       459/466
(98 %)
0 diff
(100 %id)
AI915387 pooled .r-u 3561 to 3978 426 to 1       426/438
(97 %)
12 diff
(97.3 %id)
AL110420 testis .r-u 3613 to 4216 1 to 605   tiling clone,   605/611
(99 %)
3 diff
(99.6 %id)
AA812729   .r-u 3658 to 3980 323 to 1       323/323
(100 %)
2 diff
(99.4 %id)
DC310046 cerebellum .s 1 to 540 1 to 540 exact tiling clone,   540/540
(100 %)
2 diff
(99.7 %id)
AF150432 umbilical cord blood .t 1 to 715 1 to 655 exact tiling clone,   574/657
(87 %)
23 diff
(96.5 %id)
CD521464 pooled .t 82 to 657 1 to 581 exact tiling clone,   581/737
(78 %)
12 diff
(98.4 %id)
AV737630 cord Blood .t 373 to 717 20 to 361   tiling clone, AAA   342/361
(94 %)
6 diff
(98.4 %id)
DA448657 tongue, tumor tissue .u 1 to 578 2 to 578 exact tiling clone, capped   577/577
(100 %)
2 diff
(99.7 %id)
DA461284 tongue, tumor tissue .va 1 to 576 2 to 576 exact tiling clone, capped   575/575
(100 %)
1 diff
(99.9 %id)
BE071790 breast .vb-u 1 to 556 1 to 555 M17L L22W C24G L26W F27S ... tiling clone,   555/555
(100 %)
22 diff
(96.1 %id)
DA122061 cerebellum .vc-u 1 to 540 2 to 543 exact tiling clone, capped   542/542
(100 %)
2 diff
(99.7 %id)
BX484122   .vd-u 1 to 462 1 to 461 exact tiling clone,   461/461
(100 %)
2 diff
(99.6 %id)
DB069230 testis .ve 1 to 456 2 to 457 exact tiling clone, capped   456/456
(100 %)
3 diff
(99.4 %id)
BG943967 blood .vf-u 1 to 363 1 to 363 L42W tiling clone,   363/363
(100 %)
2 diff
(99.5 %id)
BE817014 breast_normal .vg-u 1 to 325 333 to 5 C8G S28F N31I K32L tiling clone,   329/342
(96 %)
0 diff
(100 %id)
BE818467 breast_normal .vg-u 1 to 356 355 to 1 exact tiling clone,   355/364
(97 %)
3 diff
(99.2 %id)
AV743590 cord Blood Gene ATP2C1, variant not shown         Submitted on the opposite strand    
128 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r-u, .s, .t, .u, .va, .vb-u, .vc-u, .vd-u, .ve, .vf-u, .vg-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC