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Gene ATOH8TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
150 supporting clones for gene ATOH8 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_032827.6   .a 1 to 5859 4 to 5862 exact RefSeq, AAA   5862/5862
(100 %)
0 diff
(100 %id)
DA598140   .a 1 to 312 4 to 315   capped   314/314
(100 %)
0 diff
(100 %id)
DA629171 Kidney .a 1 to 566 4 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
DA877164 Prostate .a 1 to 284 4 to 287   capped   286/286
(100 %)
0 diff
(100 %id)
DB196743 trachea .a 1 to 566 4 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA884999   .a 1 to 548 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA872278 Prostate .a 18 to 371 2 to 356   capped   355/355
(100 %)
3 diff
(99.2 %id)
DA333484 hippocampus .a 19 to 600 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DA889412   .a 19 to 340 2 to 323   capped   322/322
(100 %)
1 diff
(99.7 %id)
DB259263 uterus .a 20 to 359 2 to 344   capped   343/343
(100 %)
4 diff
(98.9 %id)
DA904636   .a 21 to 298 2 to 279   capped   278/278
(100 %)
1 diff
(99.7 %id)
DA872910 Prostate .a 23 to 506 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
BG899868 cartilage .a 44 to 300 76 to 334       259/270
(95 %)
6 diff
(97.8 %id)
DA889409   .a 46 to 292 2 to 248   capped   247/247
(100 %)
0 diff
(100 %id)
DA949401 Spleen .a 49 to 353 2 to 306   capped   305/305
(100 %)
0 diff
(100 %id)
DB265579 uterus .a 81 to 396 2 to 317   capped   316/316
(100 %)
1 diff
(99.7 %id)
AK074681 mammary gland .a 106 to 2539 1 to 2434 L150P available from FLJ,   2434/2434
(100 %)
1 diff
(100.0 %id)
BF205214 muscle, rhabdomyosarcoma .a 106 to 727 1 to 621       621/621
(100 %)
8 diff
(98.8 %id)
BC021207 Muscle, rhabdomyosarcoma .a 107 to 2539 1 to 2433 L150P available from MGC, AAA   2433/2433
(100 %)
6 diff
(99.8 %id)
DA646658 mammary gland .a 107 to 694 2 to 589   capped   588/592
(99 %)
4 diff
(99.4 %id)
DB257719 uterus .a 107 to 605 2 to 500   capped   499/499
(100 %)
1 diff
(99.8 %id)
CA396816 eye, RPE/choroid .a 108 to 660 1 to 553       553/553
(100 %)
0 diff
(100 %id)
DA206210 brain .a 127 to 653 2 to 535   capped   534/534
(100 %)
7 diff
(98.7 %id)
DA561956 heart .a 127 to 464 2 to 339   capped   338/338
(100 %)
0 diff
(100 %id)
DA886373   .a 134 to 699 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA543801   .a 175 to 694 2 to 521   capped   520/520
(100 %)
1 diff
(99.9 %id)
DA597710   .a 175 to 680 2 to 507   capped   506/506
(100 %)
0 diff
(100 %id)
DA640224 Liver .a 187 to 662 2 to 481   capped   480/480
(100 %)
6 diff
(98.8 %id)
DA554737   .a 204 to 689 2 to 487   capped   486/487
(99 %)
2 diff
(99.6 %id)
DA595123 lung .a 204 to 565 2 to 365   capped   364/364
(100 %)
2 diff
(99.5 %id)
DA607288   .a 204 to 689 2 to 487   capped   486/495
(98 %)
3 diff
(99.4 %id)
DA610312   .a 204 to 694 2 to 492   capped   491/496
(98 %)
2 diff
(99.6 %id)
DA639474 Liver .a 204 to 689 2 to 487   capped   486/486
(100 %)
1 diff
(99.8 %id)
DA868486 Prostate .a 204 to 491 2 to 290   capped   289/289
(100 %)
1 diff
(99.7 %id)
DA873208 Prostate .a 204 to 696 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
DA881899   .a 204 to 714 2 to 513   capped   512/512
(100 %)
1 diff
(99.9 %id)
AK027614   .a 205 to 2539 1 to 2335 L150P available from FLJ, AAA   2335/2335
(100 %)
2 diff
(100.0 %id)
DA735290   .a 206 to 763 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BG819288 anaplastic oligodendroglioma with 1p/19qloss, brain .a 230 to 885 1 to 658       658/659
(99 %)
17 diff
(97.5 %id)
BC094832 Eye, normal, pigmented retinal epithelium .a 328 to 2536 1 to 2209 exact tiling clone, AAA   2209/2209
(100 %)
2 diff
(100.0 %id)
BQ641428 eye, normal pigmented retinal epithelium .a 330 to 691 1 to 362       362/1047
(34 %)
1 diff
(100.0 %id)
DA657997   .a 330 to 689 2 to 361   capped   360/360
(100 %)
0 diff
(100 %id)
DA733306   .a 338 to 746 2 to 412   capped   411/413
(99 %)
9 diff
(97.9 %id)
DA924318 small intestine .a 344 to 676 2 to 335   capped   334/334
(100 %)
1 diff
(99.8 %id)
DA061657 cerebellum .a 367 to 696 10 to 339   capped   330/338
(97 %)
6 diff
(98.3 %id)
DA659504   .a 368 to 878 2 to 513   capped   512/512
(100 %)
2 diff
(99.7 %id)
BM739052 Ascites, stomach .a 387 to 877 1 to 498       498/498
(100 %)
11 diff
(97.8 %id)
BM740008 Ascites, stomach .a 387 to 971 1 to 584       584/585
(99 %)
6 diff
(99.0 %id)
BM739940 Ascites, stomach .a 387 to 577 1 to 191       191/191
(100 %)
7 diff
(96.4 %id)
BM745686 Ascites, stomach .a 387 to 618 1 to 238       238/238
(100 %)
6 diff
(97.5 %id)
BM747805 Ascites, stomach .a 387 to 908 1 to 522       522/522
(100 %)
6 diff
(98.9 %id)
BM756547 Ascites, stomach .a 387 to 685 1 to 299       299/299
(100 %)
0 diff
(100 %id)
BM756548 Ascites, stomach .a 387 to 680 1 to 294       294/294
(100 %)
0 diff
(100 %id)
BM759986 Ascites, stomach .a 387 to 736 1 to 352       352/352
(100 %)
4 diff
(98.9 %id)
BM770138 Ascites, stomach .a 387 to 681 1 to 295       295/295
(100 %)
0 diff
(100 %id)
BM752037 Ascites, stomach .a 388 to 724 1 to 335       335/335
(100 %)
9 diff
(97.4 %id)
AF529205 umbilical vein .a 402 to 1367 1 to 966 L150P     966/966
(100 %)
1 diff
(99.9 %id)
DA944664 Spleen .a 403 to 737 2 to 336   capped   335/335
(100 %)
0 diff
(100 %id)
CF132289 Chondrosarcoma Lung Metastasis cell lines, lung .a 530 to 1332 1 to 803       803/803
(100 %)
1 diff
(99.9 %id)
TI_159676520   .a 530 to 1375 44 to 888       845/1036
(81 %)
9 diff
(99.2 %id)
CF132508 Chondrosarcoma Lung Metastasis cell lines, lung .a 974 to 1765 1 to 790       790/794
(99 %)
4 diff
(99.5 %id)
TI_159676777   .a 974 to 1878 50 to 941       892/1048
(85 %)
21 diff
(98.0 %id)
DA360488 subthalamic nucleus .a 985 to 1535 2 to 552   capped   551/552
(99 %)
1 diff
(99.9 %id)
DB190463 lung, tumor tissue .a 1001 to 1571 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
CD672386 eye, Iris .a 1013 to 1536 1 to 524       524/524
(100 %)
0 diff
(100 %id)
BE393406 endometrium, adenocarcinoma cell line, uterus .a 1075 to 1573 1 to 499       499/500
(99 %)
3 diff
(99.4 %id)
BI819661 pooled brain, lung, testis .a 1077 to 1853 1 to 784       784/784
(100 %)
13 diff
(98.4 %id)
TI_57200209   .a 1077 to 1853 84 to 867       784/867
(90 %)
18 diff
(98.0 %id)
CA406822 adipose .a 1120 to 1623 1 to 503       503/503
(100 %)
1 diff
(99.9 %id)
BF348069 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1158 to 1917 1 to 761       761/936
(81 %)
35 diff
(96.3 %id)
BQ694898 adipose .a 1184 to 1744 1 to 564       564/577
(97 %)
17 diff
(97.1 %id)
DA128470 cerebellum .a 1193 to 1776 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
CD515494 White Matter .a 1198 to 1989 30 to 827       798/927
(86 %)
19 diff
(98.0 %id)
CD516709 White Matter .a 1312 to 2140 1 to 841       841/878
(95 %)
16 diff
(98.2 %id)
BX115320 brain, glioblastoma (pooled) .a 1326 to 1535 1 to 210       210/214
(98 %)
1 diff
(99.6 %id)
BG402559 bladder, transitional cell papilloma, cell line .a 1437 to 2189 1 to 754       754/755
(99 %)
13 diff
(98.3 %id)
BE300015 muscle, rhabdomyosarcoma .a 1528 to 2062 1 to 528   fully sequenced,   528/528
(100 %)
4 diff
(99.3 %id)
BG820302 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1546 to 2293 1 to 747       747/749
(99 %)
9 diff
(98.8 %id)
TI_159723469   .a 1587 to 2539 1034 to 93   AAA   942/1024
(91 %)
50 diff
(95.2 %id)
BG819840 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1593 to 2385 1 to 795       795/795
(100 %)
7 diff
(99.2 %id)
EB386270 eye, optic nerve .a 1788 to 2533 1 to 746       746/746
(100 %)
0 diff
(100 %id)
BQ067527 pooled brain, lung, testis .a 1791 to 2540 1 to 747       747/1069
(69 %)
26 diff
(97.6 %id)
BQ015357 Chondrosarcoma, Left Pubic Bone .a 1862 to 2539 693 to 16   AAA   678/678
(100 %)
4 diff
(99.5 %id)
TI_151771451   .a 1864 to 2541 107 to 776       670/780
(85 %)
18 diff
(97.7 %id)
AL701399 human skeletal muscle .a 1875 to 2291 1 to 417       417/417
(100 %)
1 diff
(99.8 %id)
CB242753 Human Lung Epithelial cells, lung .a 1943 to 2539 612 to 16   AAA   597/597
(100 %)
3 diff
(99.5 %id)
DB365200   .a 1959 to 2530 576 to 7       570/579
(98 %)
0 diff
(100 %id)
BF434995 fibrotheoma, ovary .a 2000 to 2541 542 to 1       542/542
(100 %)
2 diff
(99.7 %id)
AA253103 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2020 to 2336 311 to 1     Submitted on the opposite strand 311/311
(100 %)
6 diff
(98.1 %id)
AA253048 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2026 to 2294 1 to 262     Submitted on the opposite strand 262/272
(96 %)
7 diff
(97.5 %id)
BE299598 muscle, rhabdomyosarcoma .a 2032 to 2479 465 to 11   fully sequenced,   455/465
(97 %)
6 diff
(98.8 %id)
F31116 pectoral muscle (after mastectomy) .a 2073 to 2400 1 to 328       328/328
(100 %)
3 diff
(99.1 %id)
BM709971 eye, optic nerve .a 2082 to 2536 1 to 455   AAA   455/455
(100 %)
0 diff
(100 %id)
AA923461 pooled .a 2086 to 2541 451 to 1       451/451
(100 %)
8 diff
(98.3 %id)
F36552 pectoral muscle (after mastectomy) .a 2091 to 2543 1 to 453       453/455
(99 %)
6 diff
(98.7 %id)
BM671127 eye, optic nerve .a 2124 to 2539 434 to 19   AAA   416/416
(100 %)
1 diff
(99.8 %id)
AI361517 brain, glioblastoma (pooled) .a 2134 to 2536 403 to 1       403/403
(100 %)
0 diff
(100 %id)
DA741292   .a 2149 to 2649 2 to 504   tiling clone, capped   503/503
(100 %)
3 diff
(99.5 %id)
AW205354   .a 2154 to 2539 403 to 18   AAA   386/398
(96 %)
3 diff
(99.3 %id)
TI_153989220   .a 2154 to 2539 465 to 80   AAA   386/647
(59 %)
3 diff
(99.6 %id)
AI088500 uterus .a 2173 to 2543 373 to 3   tiling clone,   371/373
(99 %)
0 diff
(100 %id)
DB361384 mammary gland .a 2177 to 2539 364 to 1       364/366
(99 %)
4 diff
(99.0 %id)
AV752553 Pituitary .a 2189 to 2539 1 to 348   AAA   348/348
(100 %)
5 diff
(98.6 %id)
AI420201 Prostate .a 2212 to 2539 361 to 34   AAA   328/339
(96 %)
21 diff
(93.9 %id)
BG998470 head_neck .a 2275 to 2536 31 to 291   AAA   261/291
(89 %)
6 diff
(98.0 %id)
BG998471 head_neck .a 2275 to 2536 19 to 276   AAA   258/276
(93 %)
6 diff
(97.9 %id)
F35894 pectoral muscle (after mastectomy) .a 2318 to 2543 1 to 227       227/232
(97 %)
6 diff
(97.5 %id)
AW149644 brain, medulloblastoma .a 2383 to 2543 162 to 2       161/162
(99 %)
0 diff
(100 %id)
DA412078 thalamus .a 2551 to 3107 2 to 558   tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
BF347522 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2815 to 3514 1 to 698   tiling clone,   698/699
(99 %)
6 diff
(99.2 %id)
DA133797 alzheimer cortex .a 2929 to 3488 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
BX105521 breast .a 4293 to 5088 1 to 795   tiling clone,   795/795
(100 %)
7 diff
(99.2 %id)
H24977 breast .a 4331 to 4684 1 to 362       362/390
(92 %)
17 diff
(95.7 %id)
BQ018438 lung, Metastatic Chondrosarcoma .a 5202 to 5859 676 to 19   tiling clone, AAA   658/658
(100 %)
0 diff
(100 %id)
BF921884 nervous_tumor .a 5219 to 5579 363 to 6     Submitted on the opposite strand 358/364
(98 %)
0 diff
(100 %id)
DB301105 alzheimer cortex .a 5320 to 5854 537 to 1       537/537
(100 %)
2 diff
(99.7 %id)
H24938 breast .a 5339 to 5842 506 to 1       506/517
(97 %)
15 diff
(97.1 %id)
AI632772 Kidney .a 5366 to 5859 509 to 16   AAA   494/494
(100 %)
2 diff
(99.6 %id)
H44762 breast .a 5492 to 5843 358 to 1       358/358
(100 %)
7 diff
(98.1 %id)
AL831857 amygdala .b 1 to 3098 1 to 3098 exact tiling clone, available from DKFZ, AAA   3098/3098
(100 %)
3 diff
(100.0 %id)
DA610433   .b 524 to 1079 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AK093766 thymus .b 767 to 3096 1 to 2329   tiling clone, available from FLJ,   2329/2329
(100 %)
3 diff
(99.9 %id)
DB110147 thymus .b 768 to 1342 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
BG899158 cartilage .b 808 to 1116 81 to 389       309/326
(94 %)
6 diff
(98.2 %id)
BG899546 cartilage .b 959 to 1439 100 to 580   tiling clone,   481/510
(94 %)
6 diff
(98.9 %id)
BF348361 anaplastic oligodendroglioma with 1p/19qloss, brain .b 1396 to 2178 13 to 782       770/885
(87 %)
32 diff
(96.4 %id)
BC019854 Brain, anaplastic oligodendroglioma with1p/19q loss .b 1632 to 2431 1 to 800   available from MGC, AAA   800/815
(98 %)
2 diff
(99.8 %id)
BF933883 nervous_tumor .b 1680 to 2181 501 to 2     Submitted on the opposite strand 500/504
(99 %)
0 diff
(100 %id)
W07508.
matches multiple genes
lung .b 1845 to 2227 1 to 384     also hits gene TNS1 384/384
(100 %)
14 diff
(96.4 %id)
BG897585 cartilage .b 2161 to 2541 79 to 459       381/398
(95 %)
6 diff
(98.5 %id)
BQ014259 Chondrosarcoma, Left Pubic Bone .b 2438 to 3098 677 to 17   AAA   661/661
(100 %)
1 diff
(99.9 %id)
DB343276 thymus .b 2571 to 3096 526 to 1       526/526
(100 %)
1 diff
(99.9 %id)
N81145.
matches multiple genes
lung .b 2664 to 3093 432 to 1     also hits gene TNS1 432/438
(98 %)
3 diff
(99.4 %id)
BX110305 anaplastic oligodendroglioma, brain .b 2708 to 3093 1 to 386       386/386
(100 %)
1 diff
(99.8 %id)
BG057085 anaplastic oligodendroglioma, brain .b 2811 to 3096 296 to 11   AAA   286/286
(100 %)
0 diff
(100 %id)
AI381252   .b 2821 to 3096 277 to 1       277/277
(100 %)
1 diff
(99.7 %id)
BQ427807 melanotic melanoma, skin .c 1 to 530 1 to 533   tiling clone,   533/743
(71 %)
32 diff
(95.7 %id)
BQ212911 melanotic melanoma, skin .c 108 to 627 1 to 525 R30T V51L V81A Q96H A103T ... tiling clone,   525/1046
(50 %)
15 diff
(98.6 %id)
AK096049 Kidney .d 1 to 1888 2 to 1889 exact tiling clone, available from FLJ,   1889/1889
(100 %)
2 diff
(99.9 %id)
DA629676 Kidney .d 1 to 572 2 to 576   capped   575/575
(100 %)
6 diff
(99.0 %id)
DB320796 Kidney .d 1325 to 1888 564 to 1       564/564
(100 %)
0 diff
(100 %id)
BU171388 melanotic melanoma, skin .e 1 to 715 33 to 748   tiling clone,   716/888
(80 %)
12 diff
(98.7 %id)
BI004196 head_normal .e 577 to 772 1 to 198       198/198
(100 %)
9 diff
(95.5 %id)
CR625589 Neuroblastoma Cot 50-normalized .e 582 to 1869 1 to 1288 exact tiling clone,   1288/1288
(100 %)
0 diff
(100 %id)
AL529779 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 582 to 1239 1 to 653 G110E N111M V113* fully sequenced,   653/653
(100 %)
2 diff
(99.7 %id)
AL529778 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .e 1209 to 1869 656 to 1   fully sequenced,   656/656
(100 %)
10 diff
(98.5 %id)
BF725177 eye, Iris .f-u 1 to 568 1 to 568 exact tiling clone,   568/568
(100 %)
0 diff
(100 %id)
BI045457 prostate_normal .g-u 1 to 568 13 to 579 W10G S11V C12A F13L K14R ... tiling clone,   567/579
(97 %)
6 diff
(99.0 %id)
DA275565 corpus callosum .h-u 1 to 346 2 to 352 L26S P28S E29* tiling clone, capped   351/351
(100 %)
10 diff
(97.2 %id)
BF850244 lung_normal Gene ATOH8, variant not shown              
BI041609 nervous_tumor Gene ATOH8, variant not shown              
DB308426 hippocampus Gene ATOH8, variant not shown              
DA310099 hippocampus Gene ATOH8, variant not shown       capped      
AA724859 pooled Gene ATOH8, variant not shown         Suspected internal deletion, this clone was ignored    
BE393035 endometrium, adenocarcinoma cell line, uterus Gene ATOH8, variant not shown         Suspected internal deletion, this clone was ignored    
BE393045 endometrium, adenocarcinoma cell line, uterus Gene ATOH8, variant not shown         Suspected internal deletion, this clone was ignored    
DA665992   Gene ATOH8, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB380907 placenta Gene ATOH8, variant not shown              
DA833914 placenta Gene ATOH8, variant not shown       capped      
DB232730 trachea Gene ATOH8, variant not shown       capped This clone was ignored    
DB350101 trachea Gene ATOH8, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g-u, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C