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Gene ASCL2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
55 supporting clones for gene ASCL2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX335651 Placenta Cot 25-normalized .a 1 to 907 1 to 915   tiling clone,   915/924
(99 %)
52 diff
(94.4 %id)
CN291200 embryonic stem cells, DMSO-treated H9 cellline .a 5 to 300 1 to 296   tiling clone,   296/296
(100 %)
1 diff
(99.7 %id)
TI_57234544   .a 57 to 764 24 to 741       718/751
(95 %)
6 diff
(99.3 %id)
BC028140 Blood, adult leukocytes .a 67 to 1715 1 to 1649 exact tiling clone, available from MGC, AAA   1649/1649
(100 %)
0 diff
(100 %id)
BI908780 leukocyte .a 67 to 764 1 to 708   available from MGC,   708/718
(98 %)
21 diff
(97.1 %id)
NM_005170.2   .a 67 to 1914 1 to 1848 exact RefSeq, AAA   1848/1848
(100 %)
0 diff
(100 %id)
TI_1959500563   .a 335 to 928 602 to 10       593/1285
(46 %)
0 diff
(100 %id)
TI_1959502517   .a 335 to 1183 861 to 14       848/1268
(66 %)
0 diff
(100 %id)
TI_1959503193   .a 335 to 1203 54 to 925     Submitted on the opposite strand 872/1000
(87 %)
6 diff
(99.4 %id)
BC136567 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 341 to 1639 1 to 1299 exact     1299/1299
(100 %)
1 diff
(100.0 %id)
BC136561 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 342 to 1639 1 to 1298 exact     1298/1298
(100 %)
1 diff
(100.0 %id)
TI_1959502813   .a 342 to 1279 51 to 986       936/1077
(86 %)
15 diff
(98.7 %id)
BC057801 Placenta, pre-eclamptic .a 431 to 1914 1 to 1484 exact available from MGC, AAA   1484/1484
(100 %)
0 diff
(100 %id)
CB997576 placenta, pre-eclamptic placenta .a 431 to 729 28 to 325       298/356
(83 %)
7 diff
(98.1 %id)
AL549941 placenta, Placenta Cot 25-normalized .a 443 to 869 39 to 467       429/467
(91 %)
6 diff
(98.8 %id)
BX339752 Placenta Cot 25-normalized .a 446 to 1294 41 to 885   fully sequenced,   845/885
(95 %)
13 diff
(98.6 %id)
CR603858 Placenta Cot 25-normalized .a 450 to 1903 1 to 1454 exact     1454/1454
(100 %)
0 diff
(100 %id)
BX387740 Placenta Cot 25-normalized .a 450 to 1294 1 to 839       839/1014
(82 %)
13 diff
(98.8 %id)
BX458875.
matches multiple genes
placenta .a 453 to 1412 1 to 954     also hits gene RBCK1 954/1031
(92 %)
21 diff
(98.0 %id)
TI_1959499315   .a 659 to 1640 12 to 994 A32S G33R D34G P36T T37H ...     983/1299
(75 %)
9 diff
(99.4 %id)
TI_1959499507   .a 747 to 1639 1126 to 248 exact     879/1313
(66 %)
24 diff
(98.2 %id)
TI_1959499429   .a 794 to 1639 1094 to 254 exact     841/1298
(64 %)
22 diff
(98.4 %id)
TI_1959499167   .a 809 to 1639 1090 to 255 S2N R16P V22L L27I A55V     836/1281
(65 %)
36 diff
(97.2 %id)
BM856944 stomach .a 1004 to 1269 1 to 267       267/267
(100 %)
3 diff
(98.9 %id)
TI_1959503195   .a 1091 to 1640 616 to 67 exact     550/838
(65 %)
12 diff
(98.6 %id)
BX434280 placenta .a 1100 to 1906 806 to 1 S2A L3Q S4A G6E S7P ...     806/838
(96 %)
34 diff
(96.0 %id)
BX339751 Placenta Cot 25-normalized .a 1256 to 1886 631 to 1 L27S R28A Q30S R31E A32P ... fully sequenced,   631/631
(100 %)
4 diff
(99.4 %id)
BX366756 Placenta Cot 25-normalized .a 1279 to 1903 625 to 1       625/1090
(57 %)
6 diff
(99.5 %id)
AA565752 colon, tumor .a 1324 to 1714 391 to 2       390/391
(99 %)
0 diff
(100 %id)
AI861937 colon, colon tumor, RER+ .a 1331 to 1715 385 to 1       385/385
(100 %)
7 diff
(98.2 %id)
AA565766 colon, tumor .a 1361 to 1714 355 to 3       353/357
(98 %)
0 diff
(100 %id)
AA565767 colon, tumor .a 1361 to 1683 322 to 1       322/322
(100 %)
3 diff
(99.1 %id)
AW083899 colon, moderately differentiated adenocarcinoma .a 1400 to 1713 315 to 2       314/315
(99 %)
0 diff
(100 %id)
BM852651 stomach .a 1441 to 1713 1 to 273       273/278
(98 %)
2 diff
(99.3 %id)
AW080652 colon, moderately differentiated adenocarcinoma .a 1453 to 1714 314 to 53   AAA   262/262
(100 %)
22 diff
(91.7 %id)
BX330027 Placenta Cot 25-normalized .a 1458 to 1897 451 to 9       443/490
(90 %)
0 diff
(100 %id)
BX114633 colon, colon tumor, RER+ .a 1461 to 1719 1 to 259   AAA   259/259
(100 %)
0 diff
(100 %id)
CA334974 posterior tongue (pooled) .a 1472 to 1721 1 to 250   AAA   250/250
(100 %)
0 diff
(100 %id)
AI393930 B-cell, chronic lymphotic leukemia .a 1476 to 1914 452 to 14   AAA   439/439
(100 %)
0 diff
(100 %id)
AI337448 colon, colon tumor, RER+ .a 1488 to 1914 427 to 1       427/427
(100 %)
0 diff
(100 %id)
AI337239 colon, colon tumor, RER+ .a 1494 to 1719 226 to 1       226/226
(100 %)
0 diff
(100 %id)
BM311314 Pancreas, Purified pancreatic islet .a 1522 to 1915 398 to 5       394/398
(98 %)
0 diff
(100 %id)
AW364626 denis_drash .a 1528 to 1636 109 to 1       109/122
(89 %)
5 diff
(96.0 %id)
CA432756 mixed .a 1528 to 1719 210 to 19   AAA   192/192
(100 %)
0 diff
(100 %id)
BP417403 small intestine .a 1645 to 1937 1 to 293   tiling clone, Submitted on the opposite strand 293/299
(97 %)
1 diff
(99.7 %id)
BG980755 colon_normal .a 1657 to 1899 1 to 242       242/242
(100 %)
7 diff
(97.2 %id)
AA468668 colon .a 1666 to 1914 249 to 1       249/249
(100 %)
1 diff
(99.6 %id)
T24592   .a 1696 to 1890 195 to 1       195/195
(100 %)
6 diff
(97.0 %id)
AI632444 pooled germ cell tumors .a 1738 to 1918 187 to 7       181/187
(96 %)
0 diff
(100 %id)
AI825214 pooled germ cell tumors .a 1738 to 1918 187 to 7       181/187
(96 %)
0 diff
(100 %id)
AW237006 pooled germ cell tumors .a 1738 to 1918 187 to 7       181/187
(96 %)
0 diff
(100 %id)
AW206058   .a 1738 to 1914 194 to 18   AAA   177/187
(94 %)
1 diff
(99.5 %id)
AW449612   .a 1738 to 1914 194 to 18   AAA   177/187
(94 %)
1 diff
(99.5 %id)
C00634   .a 1748 to 1914 1 to 168       168/168
(100 %)
1 diff
(99.5 %id)
CK818760 Islets of Langerhans, Pancreas .a 1783 to 1915 12 to 144       133/159
(83 %)
1 diff
(99.4 %id)
BM126989 Islets of Langerhans, Pancreas .a 1789 to 1915 1 to 129       129/137
(94 %)
3 diff
(97.9 %id)
TI_1959502811   Gene ASCL2, variant not shown         Submitted on the opposite strand    
BY798329 eye Gene ASCL2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes DI