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Gene ARXTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
55 supporting clones for gene ARX back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ100952 Islets of Langerhans, Pancreas .a 1 to 502 1 to 502   tiling clone, fully sequenced,   502/502
(100 %)
0 diff
(100 %id)
NM_139058.2   .a 1 to 2872 1 to 2872 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 2872/2872
(100 %)
0 diff
(100 %id)
DR003086 fetal brain .a 13 to 552 1 to 540       540/540
(100 %)
4 diff
(99.3 %id)
AI656304 pooled germ cell tumors .a 145 to 555 411 to 1       411/411
(100 %)
0 diff
(100 %id)
AW594527 pooled germ cell tumors .a 148 to 537 390 to 1       390/390
(100 %)
0 diff
(100 %id)
AY038071   .a 212 to 1897 1 to 1686   tiling clone,   1686/1686
(100 %)
0 diff
(100 %id)
BQ100675 Islets of Langerhans, Pancreas .a 427 to 512 86 to 1   fully sequenced,   86/86
(100 %)
0 diff
(100 %id)
AW028575 fibrotheoma, ovary .a 1246 to 1707 462 to 1       462/462
(100 %)
5 diff
(99.0 %id)
AI422850 brain, glioblastoma (pooled) .a 1778 to 2300 1 to 523     Submitted on the opposite strand 523/523
(100 %)
0 diff
(100 %id)
AI989825 pooled germ cell tumors .a 1778 to 2208 1 to 431     Submitted on the opposite strand 431/431
(100 %)
0 diff
(100 %id)
BE502183 pooled germ cell tumors .a 1778 to 2208 1 to 431     Submitted on the opposite strand 431/431
(100 %)
0 diff
(100 %id)
BE502633 pooled germ cell tumors .a 1778 to 2298 1 to 521     Submitted on the opposite strand 521/521
(100 %)
0 diff
(100 %id)
BF941715 fibrotheoma, ovary .a 1778 to 2206 1 to 429     Submitted on the opposite strand 429/429
(100 %)
0 diff
(100 %id)
BF940577 fibrotheoma, ovary .a 1778 to 2192 1 to 415     Submitted on the opposite strand 415/415
(100 %)
0 diff
(100 %id)
T03890   .a 1778 to 2072 1 to 296     Submitted on the opposite strand 296/299
(98 %)
9 diff
(97.0 %id)
AW205105   .a 1779 to 1954 1 to 177     Submitted on the opposite strand 177/177
(100 %)
8 diff
(95.5 %id)
AW205056   .a 1779 to 2131 1 to 353     Submitted on the opposite strand 353/353
(100 %)
8 diff
(97.8 %id)
AI341389 pooled germ cell tumors .a 1796 to 2307 1 to 512     Submitted on the opposite strand 512/512
(100 %)
4 diff
(99.3 %id)
AI651645 pooled germ cell tumors .a 1796 to 2208 1 to 413     Submitted on the opposite strand 413/413
(100 %)
0 diff
(100 %id)
AW197594 pooled germ cell tumors .a 1796 to 2208 1 to 413     Submitted on the opposite strand 413/413
(100 %)
0 diff
(100 %id)
BE672881 pooled germ cell tumors .a 1796 to 2208 1 to 413     Submitted on the opposite strand 413/413
(100 %)
0 diff
(100 %id)
AW235229 pooled germ cell tumors .a 1799 to 2285 1 to 487     Submitted on the opposite strand 487/487
(100 %)
0 diff
(100 %id)
AW003590 pooled germ cell tumors .a 1803 to 2208 1 to 406     Submitted on the opposite strand 406/406
(100 %)
0 diff
(100 %id)
BQ269551 Pancreas, Purified pancreatic islet .a 1813 to 2395 1 to 582     Submitted on the opposite strand 582/582
(100 %)
1 diff
(99.9 %id)
CB068566 Pancreas, Purified pancreatic islet .a 1813 to 2427 1 to 619     Submitted on the opposite strand 619/619
(100 %)
25 diff
(96.0 %id)
AI671102 pooled germ cell tumors .a 1817 to 2208 1 to 392     Submitted on the opposite strand 392/392
(100 %)
1 diff
(99.8 %id)
AA676669 whole brain .a 1818 to 2005 1 to 187     Submitted on the opposite strand 187/187
(100 %)
7 diff
(96.3 %id)
AI917763 pooled germ cell tumors .a 1818 to 2159 1 to 342     Submitted on the opposite strand 342/342
(100 %)
1 diff
(99.8 %id)
CA775911 Pancreas, Purified pancreatic islet .a 1822 to 2440 1 to 619   tiling clone, Submitted on the opposite strand 619/619
(100 %)
0 diff
(100 %id)
BF061656 fibrotheoma, ovary .a 1831 to 2165 1 to 335     Submitted on the opposite strand 335/335
(100 %)
0 diff
(100 %id)
AI824931 pooled germ cell tumors .a 1834 to 2300 1 to 467     Submitted on the opposite strand 467/467
(100 %)
2 diff
(99.6 %id)
BE504765 pooled germ cell tumors .a 1834 to 2208 1 to 375     Submitted on the opposite strand 375/375
(100 %)
0 diff
(100 %id)
C14188   .a 1841 to 2048 2 to 210       209/210
(99 %)
6 diff
(97.2 %id)
CK825771 Pancreas, Purified pancreatic islet .a 1961 to 2566 605 to 1       605/605
(100 %)
1 diff
(99.9 %id)
BQ286187 Pancreas, Purified pancreatic islet .a 2039 to 2584 576 to 33     Submitted on the opposite strand 544/576
(94 %)
0 diff
(100 %id)
BQ004351 Chondrosarcoma, Left Pelvis .a 2146 to 2567 440 to 19   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 422/422
(100 %)
0 diff
(100 %id)
C14187   .a 2239 to 2567 328 to 1       328/339
(96 %)
0 diff
(100 %id)
BM055239 Islets of Langerhans, Pancreas .a 2259 to 2573 1 to 315       315/315
(100 %)
2 diff
(99.4 %id)
BF515465   .a 2293 to 2753 1 to 461   tiling clone, AAA Submitted on the opposite strand 461/471
(97 %)
1 diff
(99.8 %id)
TI_149272645   .a 2294 to 2872 665 to 87   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 579/997
(58 %)
4 diff
(99.6 %id)
BU675227 lung, Primary Lung Epithelial Cells .a 2294 to 2872 594 to 16   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 579/635
(91 %)
4 diff
(99.4 %id)
AA496211   .a 2305 to 2869 580 to 16   AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 565/565
(100 %)
2 diff
(99.7 %id)
BF196892 pooled .a 2306 to 2567 1 to 262   AAA Submitted on the opposite strand 262/262
(100 %)
1 diff
(99.7 %id)
CA849107 Pancreas, Purified pancreatic islet .a 2339 to 2872 572 to 38   AAA Submitted on the opposite strand 535/535
(100 %)
1 diff
(99.9 %id)
CA849001 Pancreas, Purified pancreatic islet .a 2339 to 2872 547 to 13   AAA Submitted on the opposite strand 535/535
(100 %)
1 diff
(99.9 %id)
D80456 brain .a 2355 to 2841 1 to 485   fully sequenced,   485/485
(100 %)
13 diff
(97.4 %id)
BM353865 Pancreas, Purified pancreatic islet .a 2359 to 2768 1 to 410       410/410
(100 %)
1 diff
(99.8 %id)
AA484051 Ewing's sarcoma .a 2451 to 2872 1 to 422   tiling clone, AAA Possibly primed on the genome, locally A rich (16/16 A in genome downstream of last aligned base) 422/422
(100 %)
5 diff
(98.9 %id)
AA528446 Ewing's sarcoma .a 2673 to 2857 8 to 192       185/196
(94 %)
3 diff
(98.5 %id)
D80455 brain .a 2698 to 2869 173 to 1   fully sequenced,   173/173
(100 %)
1 diff
(99.5 %id)
BP230921 brain .b-u 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
BF514139   .c-u 1 to 470 470 to 1 P2R F34X tiling clone,   470/470
(100 %)
1 diff
(99.8 %id)
BF507697   .c-u 284 to 470 187 to 1       187/187
(100 %)
5 diff
(97.4 %id)
BX282547 fibrotheoma, ovary Gene ARX, variant not shown         Suspected internal deletion, this clone was ignored    
AV718075 hypothalamus Gene ARX, variant not shown         Suspected internal deletion, this clone was ignored    
AW453059   Gene ARX, variant not shown         Suspected internal deletion, this clone was ignored    
BF435105 fibrotheoma, ovary Gene ARX, variant not shown         Suspected internal deletion, this clone was ignored    
BC148320 PCR rescued clones Gene ARX, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC