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Gene ARL4ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
294 supporting clones for gene ARL4A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG773515 testis .a-u 1 to 697 1 to 700   available from MGC,   700/700
(100 %)
10 diff
(98.6 %id)
BC039123 testis .a-u 7 to 3864 1 to 3860 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 3860/3861
(99 %)
8 diff
(99.8 %id)
DB036391 testis .a-u 386 to 946 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
CB989255 Human Placenta, placenta .a-u 782 to 1518 28 to 771       744/771
(96 %)
6 diff
(99.3 %id)
CB989203 Human Placenta, placenta .a-u 782 to 1284 28 to 530       503/565
(89 %)
2 diff
(99.7 %id)
BU664487 blood .a-u 814 to 1422 1 to 609       609/609
(100 %)
5 diff
(99.2 %id)
BE880854 large cell carcinoma, undifferentiated, lung .a-u 3279 to 3797 1 to 532       532/799
(66 %)
39 diff
(95.2 %id)
BF890972 marrow .a-u 3335 to 3608 277 to 1     Submitted on the opposite strand 277/287
(96 %)
10 diff
(96.6 %id)
CF128942 Chondrosarcoma Lung Metastasis cell lines, lung .a-u 3369 to 3583 1 to 215       215/217
(99 %)
13 diff
(94.1 %id)
AW079064 esophagus, squamous cell carcinoma .a-u 3394 to 3864 471 to 1   tiling clone,   471/471
(100 %)
4 diff
(99.2 %id)
DB524275 testis .a-u 3570 to 3864 39 to 334     Submitted on the opposite strand 296/334
(88 %)
6 diff
(98.3 %id)
AW022162 cochlea, ear .a-u 3601 to 4083 1 to 484   tiling clone,   484/484
(100 %)
6 diff
(98.8 %id)
FN076485 breast carcinoma .a-u 3653 to 3757 1 to 106       106/106
(100 %)
10 diff
(90.6 %id)
FN048000 breast carcinoma .a-u 3654 to 3757 1 to 104       104/104
(100 %)
0 diff
(100 %id)
AW780345 colon, moderately-differentiated adenocarcinoma .a-u 3905 to 4387 483 to 1   tiling clone,   483/483
(100 %)
0 diff
(100 %id)
NM_005738.3   .b 1 to 3162 1 to 3162 exact RefSeq,   3162/3162
(100 %)
0 diff
(100 %id)
BF184394 bone marrow, from chronic myelogenous leukemia .b 267 to 1010 1 to 747   tiling clone,   747/857
(87 %)
41 diff
(95.3 %id)
AA083330   .b 289 to 673 1 to 397       397/399
(99 %)
20 diff
(95.0 %id)
AU137799 placenta .b 299 to 1123 2 to 830   capped   829/830
(99 %)
6 diff
(99.3 %id)
DA915665 small intestine .b 299 to 1156 2 to 860   tiling clone, capped   859/859
(100 %)
10 diff
(98.9 %id)
U73960 Liver .b 330 to 1406 1 to 1077   tiling clone,   1077/1077
(100 %)
4 diff
(99.7 %id)
BM550177 astrocytoma grade IV, cell line, brain .b 331 to 1321 1 to 1005       1005/1013
(99 %)
24 diff
(97.7 %id)
AA083371   .b 1044 to 1404 361 to 1   tiling clone,   361/361
(100 %)
0 diff
(100 %id)
AU157319 placenta .b 1589 to 2137 549 to 4   tiling clone,   546/551
(99 %)
0 diff
(100 %id)
DB331476 small intestine .b 1860 to 2362 512 to 1   tiling clone,   512/514
(99 %)
15 diff
(97.1 %id)
BQ948724 sciatic nerve .c 1 to 854 11 to 879   tiling clone,   869/880
(98 %)
33 diff
(96.3 %id)
DA280678 corpus callosum .c 159 to 721 2 to 568   capped   567/567
(100 %)
4 diff
(99.3 %id)
CA406329 adipose .c 208 to 704 1 to 497       497/497
(100 %)
6 diff
(98.8 %id)
DW452933 Liver .c 475 to 642 22 to 190       169/190
(88 %)
7 diff
(96.4 %id)
BM955717 tonsil .c 499 to 833 1 to 335       335/335
(100 %)
6 diff
(98.3 %id)
AU076407   .c 503 to 739 1 to 234       237/234
(101 %)
8 diff
(96.6 %id)
CB106717 Liver .c 503 to 799 1 to 298       298/298
(100 %)
3 diff
(99.0 %id)
AU100080   .c 503 to 802 1 to 300       300/300
(100 %)
3 diff
(99.0 %id)
BU664973 blood .c 505 to 1145 11 to 648 V49I tiling clone,   641/659
(97 %)
10 diff
(98.5 %id)
DW431179 Liver .c 505 to 753 18 to 266       249/270
(92 %)
10 diff
(96.3 %id)
DW434954 Liver .c 505 to 744 18 to 257       240/257
(93 %)
7 diff
(97.3 %id)
DW429198 Liver .c 507 to 759 20 to 273       254/273
(93 %)
13 diff
(95.3 %id)
CN411115 embryonic stem cells, DMSO-treated H9 cellline .c 513 to 845 1 to 330       333/330
(100 %)
6 diff
(98.2 %id)
BX119164 parathyroid gland, parathyroid tumor .c 539 to 771 1 to 235       235/235
(100 %)
3 diff
(98.8 %id)
BE272886 Kidney, renal cell adenocarcinoma .c 545 to 855 1 to 311   tiling clone,   311/311
(100 %)
0 diff
(100 %id)
BU661374 blood .d 1 to 671 12 to 682 exact tiling clone,   671/684
(98 %)
8 diff
(98.9 %id)
DB472672 hippocampus .e 1 to 488 1 to 491   tiling clone,   491/491
(100 %)
4 diff
(99.2 %id)
DB451189 testis .e 230 to 699 1 to 471       471/477
(98 %)
13 diff
(97.3 %id)
BI560806 testis .e 248 to 1064 1 to 819       819/1138
(71 %)
21 diff
(98.2 %id)
TI_44349211   .e 249 to 1064 85 to 902   AAA   818/1209
(67 %)
23 diff
(98.1 %id)
NM_212460.2   .e 259 to 3212 1 to 2954 exact RefSeq,   2954/2954
(100 %)
0 diff
(100 %id)
NM_001037164.1   .e 259 to 3212 1 to 2957 exact RefSeq,   2957/2957
(100 %)
1 diff
(100.0 %id)
DB458777 testis .e 274 to 714 1 to 440       440/440
(100 %)
3 diff
(99.4 %id)
TI_57175698   .e 277 to 862 40 to 622       583/622
(93 %)
13 diff
(98.0 %id)
BG394158 eye, retinoblastoma .e 284 to 1111 15 to 849       835/1057
(78 %)
12 diff
(98.9 %id)
CK819791 Islets of Langerhans, Pancreas .e 284 to 726 1 to 444       444/444
(100 %)
2 diff
(99.6 %id)
CR747125 duodenal adenocarcinoma, cell line, small intestine .e 286 to 784 4 to 502       499/502
(99 %)
8 diff
(98.5 %id)
TI_227712885   .e 286 to 1090 883 to 82   AAA   802/973
(82 %)
6 diff
(99.4 %id)
DB447093 testis .e 287 to 711 1 to 425       425/425
(100 %)
2 diff
(99.6 %id)
CD049640 embryonic stem cells, WA01, passage 38 .e 291 to 1176 20 to 907 exact tiling clone,   888/913
(97 %)
11 diff
(98.8 %id)
BP245245 Kidney .e 291 to 868 1 to 579       579/582
(99 %)
2 diff
(99.7 %id)
TI_57172677   .e 291 to 1043 29 to 785       757/785
(96 %)
10 diff
(98.8 %id)
DA174435 amygdala .e 292 to 853 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
BG721174 testis .e 293 to 822 1 to 535       535/535
(100 %)
14 diff
(97.4 %id)
BI831775 brain, medulla .e 293 to 861 1 to 567       567/567
(100 %)
7 diff
(98.8 %id)
BI828864 brain, medulla .e 294 to 1043 1 to 754       754/754
(100 %)
7 diff
(99.1 %id)
BM557824 duodenal adenocarcinoma, cell line, small intestine .e 294 to 1261 1 to 982 S159X M192C L193C R194G Q195N ...     982/1024
(95 %)
27 diff
(97.4 %id)
BU844544 ovary, teratocarcinoma, cell line .e 294 to 1203 1 to 913 C168W A169C     913/927
(98 %)
9 diff
(99.1 %id)
DA524927 brain .e 296 to 862 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA980997 synovial membrane tissue from rheumatioidarthritis .e 296 to 830 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
BU189516 melanotic melanoma, skin .e 297 to 992 1 to 710       710/957
(74 %)
42 diff
(95.7 %id)
DB444093 testis .e 298 to 743 1 to 447       447/447
(100 %)
5 diff
(98.9 %id)
DB446526 testis .e 298 to 746 1 to 450       450/450
(100 %)
17 diff
(96.3 %id)
DA521197 brain .e 299 to 859 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DB062424 testis .e 299 to 845 2 to 551   capped   550/551
(99 %)
2 diff
(99.7 %id)
CN411119 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 300 to 677 1 to 382       382/382
(100 %)
7 diff
(98.2 %id)
DB444692 testis .e 300 to 730 1 to 431       431/431
(100 %)
1 diff
(99.8 %id)
BM141951 Islets of Langerhans, Pancreas .e 300 to 856 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
DB447342 testis .e 301 to 735 1 to 436       436/436
(100 %)
3 diff
(99.4 %id)
BG720998 testis .e 301 to 998 1 to 702       702/702
(100 %)
6 diff
(99.2 %id)
BG178114 adenocarcinoma, cell line, Prostate .e 303 to 844 1 to 555       555/1131
(49 %)
26 diff
(97.8 %id)
AU127722   .e 307 to 795 2 to 495   capped   494/494
(100 %)
4 diff
(99.2 %id)
CR598643 fetal brain .e 308 to 2379 1 to 2075 exact tiling clone,   2075/2075
(100 %)
1 diff
(100.0 %id)
AL539828 brain, fetal brain .e 308 to 1305 1 to 998 exact     998/998
(100 %)
9 diff
(99.1 %id)
CX786160 human embryonic stem cells .e 308 to 1115 1 to 811       811/811
(100 %)
2 diff
(99.8 %id)
DB442640 testis .e 310 to 766 1 to 458       458/458
(100 %)
7 diff
(98.5 %id)
BG281807 melanotic melanoma, skin .e 310 to 1079 1 to 777       777/893
(87 %)
12 diff
(98.7 %id)
BG334664 melanotic melanoma, skin .e 310 to 1062 1 to 744       744/808
(92 %)
33 diff
(96.0 %id)
BC001111 Skin, melanotic melanoma. .e 311 to 1454 1 to 1144 exact available from MGC, AAA   1144/1144
(100 %)
2 diff
(99.9 %id)
BC003027 Skin, melanotic melanoma. .e 311 to 1454 1 to 1144   available from MGC, AAA   1144/1144
(100 %)
2 diff
(99.9 %id)
BE302475 melanotic melanoma, skin .e 313 to 925 1 to 613   fully sequenced,   613/613
(100 %)
3 diff
(99.6 %id)
DB457597 testis .e 314 to 775 1 to 462       462/462
(100 %)
2 diff
(99.6 %id)
BE742597 adenocarcinoma cell line, ovary .e 317 to 1129 1 to 806       806/981
(82 %)
26 diff
(97.4 %id)
TI_57176849   .e 317 to 1135 57 to 876 N124Q Q125S V127S V129C L130T ...     820/880
(93 %)
16 diff
(98.2 %id)
DN998906 bone marrow .e 320 to 942 8 to 630       623/630
(98 %)
12 diff
(98.1 %id)
BI831483 brain, medulla .e 321 to 1101 1 to 770       770/770
(100 %)
19 diff
(97.6 %id)
TI_57172316   .e 321 to 1102 114 to 883       770/883
(87 %)
19 diff
(97.9 %id)
BI829409 brain, medulla .e 323 to 1135 1 to 814 N124Q Q125S V127S V129C L130T ...     814/818
(99 %)
11 diff
(98.7 %id)
CX782623.
matches multiple genes
human embryonic stem cells .e 327 to 1099 1 to 773     Possibly primed on the genome, locally A rich (17/18 A in genome downstream of last aligned base), also hits gene ARL4P2 773/773
(100 %)
1 diff
(99.9 %id)
BE275488 melanotic melanoma, skin .e 330 to 1025 1 to 687       687/692
(99 %)
17 diff
(97.6 %id)
BE276258 melanotic melanoma, skin .e 330 to 700 1 to 373       373/375
(99 %)
6 diff
(98.4 %id)
BE388919 endometrium, adenocarcinoma cell line, uterus .e 330 to 930 1 to 601       601/606
(99 %)
5 diff
(99.2 %id)
BE390582 endometrium, adenocarcinoma cell line, uterus .e 330 to 983 1 to 653       653/684
(95 %)
19 diff
(97.3 %id)
BE409237 choriocarcinoma, placenta .e 330 to 1010 1 to 681       681/715
(95 %)
17 diff
(97.7 %id)
BE408638 choriocarcinoma, placenta .e 330 to 833 1 to 504       504/504
(100 %)
1 diff
(99.9 %id)
BE408957 choriocarcinoma, placenta .e 330 to 798 1 to 469       469/469
(100 %)
1 diff
(99.8 %id)
BE386658 melanotic melanoma, skin .e 340 to 989 17 to 667       651/668
(97 %)
14 diff
(98.0 %id)
BI832058 brain, medulla .e 353 to 1015 25 to 696       672/698
(96 %)
17 diff
(97.6 %id)
TI_57173052   .e 353 to 1015 25 to 696       672/698
(96 %)
17 diff
(97.6 %id)
CA309708 Alveolar Macrophage, lung .e 405 to 1090 704 to 19   AAA   686/686
(100 %)
1 diff
(99.9 %id)
T85847 liver and spleen .e 407 to 720 1 to 328       328/390
(84 %)
13 diff
(96.7 %id)
BQ303182 breast .e 420 to 821 1 to 403       403/403
(100 %)
6 diff
(98.6 %id)
TI_149307099   .e 496 to 1264 852 to 85 G4W S10F AAA   768/946
(81 %)
12 diff
(98.8 %id)
BP272989   .e 512 to 1070 1 to 559       559/559
(100 %)
5 diff
(99.2 %id)
BG877738 head_neck .e 514 to 1063 549 to 1       549/558
(98 %)
0 diff
(100 %id)
CD367268 Alveolar Macrophage, lung .e 523 to 1090 586 to 19   AAA   568/568
(100 %)
0 diff
(100 %id)
AF493890 brain .e 533 to 1135 1 to 603 exact     603/603
(100 %)
0 diff
(100 %id)
CV026041 mixed .e 533 to 934 1 to 402       402/402
(100 %)
0 diff
(100 %id)
AI866512.
matches multiple genes
brain, tumor, 5 pooled (see description) .e 536 to 1100 584 to 20     also hits gene MTHFD1L 565/584
(96 %)
0 diff
(100 %id)
W24670 lung .e 552 to 982 1 to 432       432/434
(99 %)
4 diff
(99.1 %id)
BE265429 lung, small cell carcinoma .e 562 to 1208 1 to 643       643/647
(99 %)
5 diff
(99.3 %id)
AW148578 brain, tumor, 5 pooled (see description) .e 567 to 1093 527 to 1       527/561
(93 %)
8 diff
(98.6 %id)
BM979023 lung, Primary Lung Epithelial Cells .e 580 to 1264 700 to 16   AAA   685/685
(100 %)
0 diff
(100 %id)
BQ434200 melanotic melanoma, skin .e 593 to 1419 1 to 829   AAA   829/869
(95 %)
7 diff
(99.2 %id)
TI_153981418   .e 602 to 1201 71 to 676       606/1412
(42 %)
25 diff
(98.3 %id)
BQ068301 brain .e 604 to 1461 17 to 880       864/1048
(82 %)
14 diff
(98.7 %id)
AV712747   .e 605 to 1120 1 to 516       516/544
(94 %)
4 diff
(99.3 %id)
CA311435 Human Lung Epithelial cells, lung .e 617 to 1264 663 to 16   AAA   648/648
(100 %)
1 diff
(99.9 %id)
BM674349 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 623 to 1263 656 to 16   AAA   641/641
(100 %)
3 diff
(99.6 %id)
TI_159718864   .e 634 to 1454 904 to 94   AAA   811/1011
(80 %)
12 diff
(98.9 %id)
DT218205 brain .e 635 to 1254 1 to 620       620/620
(100 %)
0 diff
(100 %id)
AI143054 heart .e 641 to 1116 477 to 1       477/477
(100 %)
1 diff
(99.8 %id)
AA055537 heart .e 651 to 1090 440 to 1       440/440
(100 %)
0 diff
(100 %id)
BG575521 breast, mammary adenocarcinoma, cell line .e 661 to 1093 1 to 433   AAA   433/433
(100 %)
0 diff
(100 %id)
BM750419 Ascites, stomach .e 675 to 1242 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
BG756504 B-cells, primary B-cells from tonsils (cell line) .e 684 to 1441 1 to 757       757/757
(100 %)
5 diff
(99.4 %id)
AW118576 pooled .e 686 to 1454 769 to 6       764/770
(99 %)
0 diff
(100 %id)
AI872366 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .e 720 to 1261 577 to 36   AAA   542/543
(99 %)
9 diff
(98.4 %id)
CB852846 Human Lung Epithelial cells, lung .e 731 to 1454 742 to 19   AAA   724/724
(100 %)
1 diff
(99.9 %id)
AA989625 Spleen .e 738 to 1130 393 to 1       393/394
(99 %)
28 diff
(92.9 %id)
CA431200 cell lines, Enchondroma .e 756 to 1454 716 to 19   AAA   698/698
(100 %)
1 diff
(99.9 %id)
AA724320 pooled .e 764 to 1089 326 to 1       326/326
(100 %)
1 diff
(99.7 %id)
BM836245 stomach .e 777 to 1210 1 to 434       434/434
(100 %)
1 diff
(99.8 %id)
AA122381.
matches multiple genes
colon, tumor .e 806 to 1193 1 to 389     also hits gene ARL4P2 389/390
(99 %)
2 diff
(99.5 %id)
BU752723 placenta .e 829 to 1264 454 to 18   AAA   437/437
(100 %)
3 diff
(99.4 %id)
AA744367 germinal center B cell .e 833 to 1261 442 to 14   AAA   429/429
(100 %)
0 diff
(100 %id)
DW428589 Liver .e 856 to 1119 10 to 273       264/275
(96 %)
6 diff
(97.9 %id)
CB048695 Prostate .e 856 to 1268 10 to 422   fully sequenced, AAA   413/422
(97 %)
6 diff
(98.6 %id)
CA313380 Human Lung Epithelial cells, lung .e 860 to 1456 615 to 19   AAA   597/602
(99 %)
1 diff
(99.9 %id)
AA779165 liver and spleen .e 881 to 1454 574 to 1       574/574
(100 %)
7 diff
(98.8 %id)
CK819790 Islets of Langerhans, Pancreas .e 881 to 1454 590 to 16   AAA   575/575
(100 %)
9 diff
(98.5 %id)
AI831309 lymph node, lymphoma, follicular mixed small and largecell .e 882 to 1454 575 to 3       573/641
(89 %)
0 diff
(100 %id)
CB048694 Prostate .e 893 to 1268 400 to 25   fully sequenced, AAA   376/376
(100 %)
0 diff
(100 %id)
AA370828 Prostate .e 900 to 1221 1 to 323       323/323
(100 %)
2 diff
(99.4 %id)
AW953870   .e 900 to 1248 1 to 352       352/354
(99 %)
16 diff
(95.5 %id)
AW954037   .e 900 to 1456 1 to 556   AAA   556/556
(100 %)
1 diff
(99.9 %id)
BE717280 head_neck .e 902 to 1251 354 to 1       354/354
(100 %)
0 diff
(100 %id)
BE767524 nervous_tumor .e 902 to 1259 358 to 1       358/358
(100 %)
3 diff
(99.2 %id)
AI688751 colon .e 902 to 1454 553 to 1       553/553
(100 %)
1 diff
(99.9 %id)
AW105166 pooled .e 902 to 1454 556 to 4       553/556
(99 %)
0 diff
(100 %id)
BM141690 Islets of Langerhans, Pancreas .e 905 to 1454 565 to 16   AAA   550/550
(100 %)
6 diff
(99.0 %id)
BM829658 stomach .e 911 to 1351 1 to 443       443/443
(100 %)
17 diff
(96.2 %id)
BM832972 stomach .e 911 to 1454 1 to 544   AAA   544/544
(100 %)
0 diff
(100 %id)
BM829664 stomach .e 913 to 1382 1 to 472       472/472
(100 %)
20 diff
(95.8 %id)
BE207391 melanotic melanoma, skin .e 917 to 1454 543 to 6   fully sequenced,   538/543
(99 %)
0 diff
(100 %id)
AA280927 germinal center B cell .e 935 to 1261 327 to 1       327/327
(100 %)
1 diff
(99.7 %id)
AI333371 lung .e 941 to 1454 517 to 4       514/517
(99 %)
0 diff
(100 %id)
AA535375 colon .e 958 to 1454 497 to 1       497/520
(95 %)
7 diff
(98.7 %id)
AI151110 brain, glioblastoma (pooled) .e 981 to 1454 488 to 15   AAA   474/474
(100 %)
0 diff
(100 %id)
BM700735 eye, eye anterior segment .e 991 to 1443 1 to 453       453/453
(100 %)
5 diff
(98.9 %id)
AW026806 brain, glioblastoma (pooled) .e 992 to 1130 139 to 1       139/139
(100 %)
3 diff
(97.9 %id)
DB523078 testis .e 996 to 1452 1 to 457     Submitted on the opposite strand 457/459
(99 %)
2 diff
(99.6 %id)
AI224585 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 1010 to 1454 455 to 11   AAA   445/445
(100 %)
0 diff
(100 %id)
AA643526 colon, colon tumor RER+ .e 1013 to 1454 442 to 2       441/446
(98 %)
0 diff
(100 %id)
DB516680 testis .e 1014 to 1454 1 to 441     Submitted on the opposite strand 441/443
(99 %)
1 diff
(99.8 %id)
CR746874 duodenal adenocarcinoma, cell line, small intestine .e 1024 to 1516 12 to 504       493/504
(97 %)
6 diff
(98.9 %id)
CR747272 duodenal adenocarcinoma, cell line, small intestine .e 1024 to 1510 12 to 498       487/498
(97 %)
6 diff
(98.8 %id)
BM802164 duodenal adenocarcinoma, cell line, small intestine .e 1026 to 1814 1 to 796       796/990
(80 %)
12 diff
(98.8 %id)
DB515240 testis .e 1032 to 1454 1 to 424     Submitted on the opposite strand 424/424
(100 %)
1 diff
(99.8 %id)
DB509619 testis .e 1034 to 1454 1 to 421     Submitted on the opposite strand 421/421
(100 %)
1 diff
(99.8 %id)
AU137232 placenta .e 1041 to 1878 2 to 849   capped   848/858
(98 %)
23 diff
(97.4 %id)
DB512310 testis .e 1046 to 1452 1 to 405     Submitted on the opposite strand 405/407
(99 %)
6 diff
(98.6 %id)
DB507512 testis .e 1071 to 1454 1 to 384   AAA Submitted on the opposite strand 384/384
(100 %)
1 diff
(99.8 %id)
AW664637 pooled .e 1073 to 1454 386 to 5       382/456
(83 %)
0 diff
(100 %id)
DB508990 testis .e 1092 to 1454 1 to 385     Submitted on the opposite strand 385/385
(100 %)
31 diff
(92.0 %id)
BM752258 Ascites, stomach .e 1097 to 1454 1 to 355       355/357
(99 %)
9 diff
(97.5 %id)
AU119914 whole embryo, mainly head .e 1101 to 1906 2 to 807   capped   806/807
(99 %)
6 diff
(99.3 %id)
T23899   .e 1109 to 1454 349 to 4       346/349
(99 %)
0 diff
(100 %id)
AA179781   .e 1113 to 1452 1 to 345       345/364
(94 %)
8 diff
(97.9 %id)
DB511756 testis .e 1117 to 1453 1 to 331     Submitted on the opposite strand 331/331
(100 %)
18 diff
(94.6 %id)
BG998054 head_neck .e 1121 to 1312 214 to 17       198/242
(81 %)
0 diff
(100 %id)
T33973 blood, white blood cells .e 1127 to 1377 1 to 251       251/251
(100 %)
1 diff
(99.7 %id)
BE717279 head_neck .e 1143 to 1285 144 to 5       140/144
(97 %)
0 diff
(100 %id)
AL597673   .e 1147 to 1455 1 to 309       309/309
(100 %)
2 diff
(99.4 %id)
AI696764 adenocarcinoma, Pancreas .e 1150 to 1456 309 to 3       307/309
(99 %)
0 diff
(100 %id)
AI424132 brain, glioblastoma (pooled) .e 1162 to 1446 291 to 1       291/291
(100 %)
6 diff
(98.0 %id)
AW083580 colon, moderately differentiated adenocarcinoma .e 1162 to 1454 293 to 1       293/293
(100 %)
0 diff
(100 %id)
AI422622 Prostate .e 1164 to 1412 295 to 46       250/257
(97 %)
0 diff
(100 %id)
T90851 liver and spleen .e 1176 to 1446 271 to 1       271/271
(100 %)
1 diff
(99.7 %id)
AW590012.
matches multiple genes
pooled germ cell tumors .e 1202 to 1268 80 to 14   AAA also hits gene seykleeby 67/67
(100 %)
1 diff
(98.6 %id)
AL539827 brain, fetal brain .e 1254 to 2379 1112 to 1       1112/1147
(96 %)
19 diff
(98.4 %id)
BE826162 lung_normal .e 1486 to 2023 538 to 1       538/538
(100 %)
13 diff
(97.6 %id)
BE875713 large cell carcinoma, undifferentiated, lung .e 1517 to 2085 1 to 585       585/695
(84 %)
32 diff
(95.4 %id)
BM724494 eye, fetal eye .e 1518 to 2268 1 to 746       746/746
(100 %)
5 diff
(99.4 %id)
BE697199 colon .e 1543 to 1842 1 to 298       298/298
(100 %)
8 diff
(97.4 %id)
BM786254 Ascites, stomach .e 1567 to 2118 1 to 552       552/552
(100 %)
2 diff
(99.7 %id)
AW589289 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .e 1603 to 2065 464 to 2       463/464
(99 %)
0 diff
(100 %id)
AI313467 lung .e 1682 to 2065 389 to 6       384/389
(98 %)
0 diff
(100 %id)
AI142552 brain, glioblastoma (pooled) .e 1721 to 2212 509 to 18   AAA   492/492
(100 %)
1 diff
(99.8 %id)
DB541427 hippocampus .e 1740 to 2205 1 to 466     Submitted on the opposite strand 466/466
(100 %)
0 diff
(100 %id)
BF750806 breast_normal .e 1966 to 2350 442 to 57     Submitted on the opposite strand 386/442
(87 %)
0 diff
(100 %id)
AA180188   .e 1967 to 2416 455 to 2       454/455
(99 %)
0 diff
(100 %id)
AI568265 lymph node, lymphoma, follicular mixed small and largecell .e 1996 to 2412 418 to 2       417/418
(99 %)
0 diff
(100 %id)
AA180498   .e 2107 to 2416 313 to 1       313/326
(96 %)
7 diff
(97.9 %id)
D61752   .e 2143 to 2351 1 to 211       211/211
(100 %)
5 diff
(97.7 %id)
D79888 aorta .e 2143 to 2413 1 to 271       271/271
(100 %)
0 diff
(100 %id)
DB358480 whole embryo, mainly head .e 2206 to 2760 553 to 1   tiling clone,   553/558
(99 %)
4 diff
(99.3 %id)
DB364702   .e 2460 to 2993 534 to 1       534/551
(96 %)
15 diff
(97.3 %id)
DB376338 placenta .e 2511 to 2993 483 to 1   tiling clone,   483/483
(100 %)
6 diff
(98.8 %id)
CR614654 Neuroblastoma Cot 25-normalized .f 1 to 1296 1 to 1296 exact tiling clone,   1296/1296
(100 %)
0 diff
(100 %id)
BX354322 Neuroblastoma Cot 25-normalized .f 1 to 686 1 to 669 R25X fully sequenced,   669/669
(100 %)
4 diff
(99.5 %id)
BM955718 tonsil .f 181 to 799 1 to 616       619/616
(100 %)
7 diff
(98.9 %id)
CD511517 Blood vessels - aorta, basilar and artery .f 183 to 921 1 to 741       741/741
(100 %)
8 diff
(99.0 %id)
CB987614 Pooled-Glandular .f 184 to 872 1 to 698       698/748
(93 %)
16 diff
(97.9 %id)
BP292134 lung .f 185 to 734 1 to 550       550/550
(100 %)
3 diff
(99.5 %id)
CD049557 embryonic stem cells, WA01, passage 38 .f 186 to 994 24 to 840       817/901
(90 %)
25 diff
(97.3 %id)
BP231680 muscle .f 186 to 766 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BF695651 brain, primitive neuroectoderm .f 186 to 862 1 to 671       671/837
(80 %)
38 diff
(95.5 %id)
BG541597 lung .f 186 to 740 1 to 553       553/553
(100 %)
3 diff
(99.5 %id)
BG620197 placenta .f 186 to 974 1 to 790       790/806
(98 %)
17 diff
(97.9 %id)
BG622005 placenta .f 186 to 784 1 to 620       620/677
(91 %)
35 diff
(94.9 %id)
AU130962   .f 186 to 1086 2 to 902   capped Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 904/901
(100 %)
18 diff
(98.1 %id)
AK313233   .f 187 to 974 1 to 788       788/788
(100 %)
1 diff
(99.9 %id)
BU655830 blood .f 187 to 844 12 to 669       658/669
(98 %)
7 diff
(99.0 %id)
BU656835 blood .f 187 to 666 12 to 491       480/491
(97 %)
7 diff
(98.6 %id)
BU658295 blood .f 187 to 711 10 to 534       525/534
(98 %)
7 diff
(98.7 %id)
BU659127 blood .f 187 to 696 11 to 520       510/520
(98 %)
7 diff
(98.7 %id)
BU659444 blood .f 187 to 665 11 to 489       479/489
(97 %)
7 diff
(98.6 %id)
BU659682 blood .f 187 to 854 12 to 679       668/679
(98 %)
7 diff
(99.0 %id)
BU660060 blood .f 187 to 605 1 to 419       419/419
(100 %)
2 diff
(99.6 %id)
BU660862 blood .f 187 to 683 1 to 497       497/497
(100 %)
4 diff
(99.2 %id)
BU661460 blood .f 187 to 871 13 to 697       685/697
(98 %)
7 diff
(99.0 %id)
BU661623 blood .f 187 to 883 27 to 723       697/723
(96 %)
7 diff
(99.1 %id)
BU662368 blood .f 187 to 842 12 to 667       656/667
(98 %)
7 diff
(99.0 %id)
BU662532 blood .f 187 to 864 12 to 689       678/689
(98 %)
7 diff
(99.0 %id)
BU662688 blood .f 187 to 859 13 to 682       673/682
(98 %)
8 diff
(98.9 %id)
BU663757 blood .f 187 to 845 28 to 686       659/686
(96 %)
7 diff
(99.0 %id)
BU664349 blood .f 187 to 890 12 to 715       704/715
(98 %)
8 diff
(98.9 %id)
BU665150 blood .f 187 to 874 22 to 709       688/709
(97 %)
7 diff
(99.1 %id)
BP232857 muscle .f 187 to 768 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BG622233 placenta .f 187 to 816 1 to 642       642/644
(99 %)
24 diff
(96.3 %id)
CD110169 placenta, pre-eclamptic placenta .f 187 to 875 29 to 727       699/849
(82 %)
29 diff
(96.6 %id)
CD109419 Human Placenta, placenta .f 187 to 942 28 to 783       759/783
(96 %)
23 diff
(97.1 %id)
CF593406 Human Placenta, placenta .f 187 to 872 29 to 722       694/870
(79 %)
19 diff
(97.9 %id)
BP283936 bone marrow .f 187 to 769 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP310984 brain .f 187 to 768 1 to 582       582/582
(100 %)
10 diff
(98.3 %id)
BP311465 brain .f 187 to 765 1 to 579       579/581
(99 %)
4 diff
(99.4 %id)
BP372918 umbilical cord .f 187 to 763 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
BP376080 uterus .f 187 to 768 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA056916 cerebellum .f 188 to 795 2 to 609   capped   608/608
(100 %)
0 diff
(100 %id)
DA057763 cerebellum .f 188 to 737 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DA161173 amygdala .f 188 to 754 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA197880 brain .f 188 to 686 2 to 500   capped   499/499
(100 %)
2 diff
(99.6 %id)
CD691207 normal nasopharynx .f 188 to 773 22 to 607       586/607
(96 %)
8 diff
(98.7 %id)
BU657914 blood .f 188 to 607 11 to 430       420/430
(97 %)
7 diff
(98.4 %id)
AL602393 human skeletal muscle .f 188 to 786 1 to 599       599/599
(100 %)
1 diff
(99.9 %id)
DA496872 brain .f 188 to 756 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA719149   .f 188 to 764 2 to 579   capped   578/578
(100 %)
3 diff
(99.5 %id)
AU130737   .f 188 to 1062 2 to 872   capped   871/874
(99 %)
15 diff
(98.3 %id)
DA743459   .f 188 to 762 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DA746740   .f 188 to 745 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA752720   .f 188 to 752 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
AU138605 placenta .f 188 to 788 2 to 603   fully sequenced, capped   602/602
(100 %)
1 diff
(99.9 %id)
DA838885 placenta .f 188 to 732 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DA888882   .f 188 to 740 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA964310 stomach .f 188 to 749 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DB013889 esophageal, tumor tissue .f 188 to 754 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DB257860 uterus .f 188 to 764 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
BU658797 blood .f 192 to 777 1 to 586       586/586
(100 %)
1 diff
(99.9 %id)
BU661075 blood .f 192 to 722 1 to 531       531/531
(100 %)
2 diff
(99.7 %id)
CN411120 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 192 to 792 1 to 602       602/602
(100 %)
6 diff
(99.1 %id)
TI_57220185   .f 197 to 810 31 to 640       610/640
(95 %)
10 diff
(98.5 %id)
TI_57165576   .f 200 to 906 28 to 734       707/734
(96 %)
18 diff
(97.6 %id)
BI756932 brain .f 202 to 810 1 to 605       605/605
(100 %)
4 diff
(99.4 %id)
BI837615 pooled pancreas and spleen .f 203 to 906 1 to 704       704/704
(100 %)
12 diff
(98.3 %id)
BF107503 placenta .f 205 to 799 1 to 584       584/774
(75 %)
22 diff
(97.2 %id)
BE567530 bladder, carcinoma, cell line .f 206 to 785 1 to 580       583/648
(89 %)
10 diff
(98.5 %id)
W32987.
matches multiple genes
parathyroid gland, parathyroid tumor .f 207 to 673 7 to 475     also hits gene ARL4P2 469/475
(98 %)
8 diff
(98.4 %id)
BU930883 ovary, teratocarcinoma, cell line .f 210 to 932 1 to 723   AAA   723/723
(100 %)
2 diff
(99.8 %id)
DN992902 brain, whole brain .f 211 to 902 1 to 689       692/690
(100 %)
7 diff
(99.0 %id)
CN411116 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 212 to 584 1 to 374       374/375
(99 %)
8 diff
(97.9 %id)
BU786406 Pancreas, Purified pancreatic islet .f 214 to 631 10 to 427   fully sequenced,   418/427
(97 %)
6 diff
(98.6 %id)
CN411118 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 216 to 564 1 to 349       349/349
(100 %)
1 diff
(99.8 %id)
BM020748 astrocytoma grade IV, cell line, brain .f 218 to 914 1 to 699       699/700
(99 %)
7 diff
(99.0 %id)
TI_59387770   .f 218 to 914 97 to 795       699/700
(99 %)
7 diff
(99.0 %id)
BE785685 large cell carcinoma, lung .f 223 to 781 1 to 564       564/564
(100 %)
6 diff
(99.0 %id)
BM562871 astrocytoma grade IV, cell line, brain .f 223 to 821 1 to 605       605/923
(65 %)
8 diff
(99.2 %id)
BE789382 large cell carcinoma, lung .f 232 to 897 1 to 660       660/905
(72 %)
12 diff
(98.7 %id)
CN411117 embryonic stem cells, cell lines H1, H7, andH9 .f 248 to 702 1 to 455       455/455
(100 %)
2 diff
(99.6 %id)
BU784677 Pancreas, Purified pancreatic islet .f 601 to 931 331 to 1   fully sequenced,   331/331
(100 %)
0 diff
(100 %id)
BX354321 Neuroblastoma Cot 25-normalized .f 656 to 1296 642 to 1   fully sequenced,   642/642
(100 %)
2 diff
(99.7 %id)
DB378495 placenta .f 758 to 1103 340 to 1   fully sequenced,   340/340
(100 %)
3 diff
(99.2 %id)
DB367880   .f 2172 to 2599 428 to 1   tiling clone,   428/432
(99 %)
6 diff
(98.7 %id)
DB368082   .f 2413 to 2832 449 to 31   tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 419/497
(84 %)
7 diff
(98.6 %id)
DA074293 cerebellum .g 1 to 576 2 to 577 exact tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
BP211644 cerebrum .g 1 to 571 1 to 571       571/571
(100 %)
2 diff
(99.7 %id)
DA144410 amygdala .g 2 to 576 2 to 576 exact capped   575/575
(100 %)
1 diff
(99.9 %id)
DA750605   .g 2 to 567 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA873772 Prostate .g 2 to 563 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AV715591   .g 8 to 515 1 to 508       508/508
(100 %)
0 diff
(100 %id)
CB158787 Liver .g 33 to 476 1 to 444       444/444
(100 %)
1 diff
(99.8 %id)
AI133251 Liver .g 36 to 407 1 to 372       372/372
(100 %)
2 diff
(99.5 %id)
BU661565 blood Gene ARL4A, variant not shown         This clone was ignored    
AV698548 hepatocellular carcinoma Gene ARL4A, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d, .e, .f, .g Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI