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Gene ARHGEF4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
124 supporting clones for gene ARHGEF4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF249745   .a 1 to 3667 1 to 3665 R672G R673A K674S P675I S676Y ... tiling clone,   3665/3665
(100 %)
8 diff
(99.8 %id)
NM_015320.2   .a 1 to 3667 1 to 3667 exact RefSeq,   3667/3667
(100 %)
5 diff
(99.9 %id)
AL137289 testis .a 1101 to 3655 1 to 2555   tiling clone, available from DKFZ, AAA   2555/2555
(100 %)
1 diff
(100.0 %id)
TI_57196051   .a 1763 to 2516 31 to 786       756/786
(96 %)
13 diff
(98.4 %id)
BI818251 pooled brain, lung, testis .a 1764 to 2516 1 to 755       755/755
(100 %)
7 diff
(99.1 %id)
CV569892 cornea, eye .a 1918 to 2497 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BQ689151 ductal carcinoma, cell line, Pancreas .a 1988 to 2866 22 to 903       882/903
(97 %)
12 diff
(98.7 %id)
BQ899269 ductal carcinoma, cell line, Pancreas .a 1992 to 2952 1 to 961       961/961
(100 %)
10 diff
(99.0 %id)
BQ685016 ductal carcinoma, cell line, Pancreas .a 1992 to 2809 1 to 820       820/913
(89 %)
20 diff
(97.9 %id)
CV575421 cornea, eye .a 2014 to 2630 1 to 617       617/617
(100 %)
0 diff
(100 %id)
CV570031 cornea, eye .a 2045 to 2631 1 to 587       587/587
(100 %)
0 diff
(100 %id)
BY796847 eye .a 2097 to 2724 1 to 628       628/628
(100 %)
0 diff
(100 %id)
H11836 whole brain .a 2150 to 2541 1 to 391       391/423
(92 %)
5 diff
(98.9 %id)
CN368924 embryonic stem cells, cell lines H1, H7, andH9 .a 2271 to 2727 1 to 457       457/457
(100 %)
3 diff
(99.4 %id)
H14139 brain .a 2396 to 2679 1 to 283       283/283
(100 %)
9 diff
(96.9 %id)
H51016 brain .a 2396 to 2788 1 to 398       398/398
(100 %)
14 diff
(96.5 %id)
R87286 brain .a 2396 to 2764 1 to 371       371/374
(99 %)
19 diff
(95.0 %id)
H11480 whole brain .a 3251 to 3657 418 to 7       412/433
(95 %)
0 diff
(100 %id)
NM_032995.1   .b 1 to 4258 1 to 4258 exact RefSeq,   4258/4258
(100 %)
5 diff
(99.9 %id)
AB029035 brain .b 447 to 4246 1 to 3800 exact tiling clone, available from KIAA,   3800/3800
(100 %)
1 diff
(100.0 %id)
BU845201 ovary, teratocarcinoma, cell line .b 698 to 1594 1 to 903       903/921
(98 %)
15 diff
(98.4 %id)
BQ338287 nervous_normal .b 1017 to 1175 17 to 181       165/201
(82 %)
19 diff
(90.6 %id)
BM921679 pooled brain, lung, testis .b 1150 to 2069 20 to 944       925/1061
(87 %)
38 diff
(96.5 %id)
BF737816 bladder_tumor .b 1221 to 1356 1 to 136       136/136
(100 %)
1 diff
(99.3 %id)
CV570558 cornea, eye .b 1268 to 1892 1 to 625       625/625
(100 %)
0 diff
(100 %id)
TI_57239740   .b 1373 to 2120 25 to 791       767/796
(96 %)
25 diff
(96.9 %id)
BI916218 brain .b 1379 to 2120 1 to 761       761/766
(99 %)
20 diff
(97.4 %id)
M85772   .b 1410 to 1722 1 to 313       313/313
(100 %)
1 diff
(99.7 %id)
AW956922   .b 1418 to 2047 11 to 640       630/640
(98 %)
13 diff
(98.0 %id)
T08962   .b 1420 to 1733 1 to 314       314/314
(100 %)
0 diff
(100 %id)
BQ339277 nervous_normal .b 1481 to 1802 11 to 340       330/401
(82 %)
15 diff
(96.3 %id)
F08489 brain, total brain .b 1512 to 1721 1 to 209       209/209
(100 %)
1 diff
(99.6 %id)
F07143 brain, total brain .b 1518 to 1846 1 to 329       329/329
(100 %)
1 diff
(99.7 %id)
R20864 whole brain .b 1519 to 1858 1 to 345       345/428
(80 %)
9 diff
(97.9 %id)
H24095 whole brain .b 1519 to 1988 1 to 482       482/517
(93 %)
25 diff
(95.2 %id)
DB020523 testis .b 1551 to 2105 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BI909539 leukocyte .b 1672 to 2552 1 to 881       881/886
(99 %)
25 diff
(97.2 %id)
TI_57237811   .b 1672 to 2552 34 to 914       881/919
(95 %)
31 diff
(96.7 %id)
M62170   .b 1692 to 2053 1 to 365       365/365
(100 %)
6 diff
(98.4 %id)
BF960532 nervous_normal .b 1755 to 2336 16 to 598       583/602
(96 %)
16 diff
(97.4 %id)
DA260639 caudate nucleus .b 1757 to 2318 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
BF960522 nervous_normal .b 1773 to 2120 13 to 368       356/374
(95 %)
18 diff
(95.2 %id)
AW953277   .b 1779 to 2404 11 to 636       626/636
(98 %)
10 diff
(98.5 %id)
AW867995 stomach_normal .b 1843 to 2104 16 to 276       261/283
(92 %)
11 diff
(96.2 %id)
H13412 whole brain .b 1870 to 2357 1 to 497       497/501
(99 %)
22 diff
(95.7 %id)
BF816120 colon_ins .b 2098 to 2318 221 to 1     Submitted on the opposite strand 221/221
(100 %)
0 diff
(100 %id)
T80103 whole brain .b 2100 to 2421 1 to 325       327/325
(100 %)
8 diff
(97.6 %id)
BG743798 skin .b 2648 to 3287 30 to 671       642/671
(95 %)
6 diff
(99.2 %id)
BG698060 skin .b 3045 to 3751 7 to 716       710/717
(99 %)
14 diff
(98.1 %id)
BM924000 pooled colon, kidney, stomach .b 3196 to 4074 1 to 878       878/998
(87 %)
12 diff
(98.8 %id)
CD673186 eye, Iris .b 3222 to 3726 1 to 505       505/505
(100 %)
0 diff
(100 %id)
AA397759.
matches multiple genes
  .b 3258 to 3737 1 to 474     also hits gene ATXN2L 474/474
(100 %)
6 diff
(98.8 %id)
BM543602 brain, hippocampus .b 3332 to 3986 684 to 16     Submitted on the opposite strand 669/1030
(64 %)
26 diff
(97.5 %id)
H50215 brain .b 3385 to 3737 1 to 352       352/352
(100 %)
9 diff
(97.5 %id)
BM710167 eye, optic nerve .b 3467 to 3906 1 to 440   fully sequenced,   440/440
(100 %)
0 diff
(100 %id)
BE700000 nervous_normal .b 3476 to 3822 351 to 3       349/452
(77 %)
0 diff
(100 %id)
BF857899 prostate_tumor .b 3510 to 3967 1 to 453       453/453
(100 %)
10 diff
(97.8 %id)
BF858426 prostate_tumor .b 3513 to 3811 26 to 322       297/326
(91 %)
11 diff
(96.7 %id)
DB557046 hypothalamus .b 3533 to 4246 1 to 712     Submitted on the opposite strand 712/712
(100 %)
4 diff
(99.5 %id)
DB561549 hypothalamus .b 3535 to 4246 1 to 712     Submitted on the opposite strand 712/712
(100 %)
9 diff
(98.8 %id)
TI_149301098   .b 3587 to 4248 769 to 108       662/769
(86 %)
0 diff
(100 %id)
T02919   .b 3589 to 3908 9 to 331     Submitted on the opposite strand 323/331
(97 %)
6 diff
(98.2 %id)
BF736415 bladder_tumor .b 3617 to 4013 22 to 416       395/416
(94 %)
6 diff
(98.6 %id)
BM977044 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 3641 to 4237 618 to 22   AAA   597/606
(98 %)
0 diff
(100 %id)
BM998905 lung, Lung Focal Fibrosis .b 3642 to 4246 623 to 19   AAA   605/605
(100 %)
0 diff
(100 %id)
DB533570 hippocampus .b 3682 to 4245 1 to 564     Submitted on the opposite strand 564/565
(99 %)
7 diff
(98.8 %id)
TI_59395324   .b 3688 to 4172 513 to 20       494/518
(95 %)
0 diff
(100 %id)
T15412   .b 3747 to 4234 487 to 1       487/487
(100 %)
4 diff
(99.2 %id)
AW296250   .b 3755 to 4246 513 to 18   AAA   496/496
(100 %)
2 diff
(99.6 %id)
BE502420 pooled germ cell tumors .b 3768 to 4246 479 to 1       479/484
(98 %)
0 diff
(100 %id)
DB575295 hypothalamus .b 3772 to 4245 1 to 474     Submitted on the opposite strand 474/475
(99 %)
2 diff
(99.6 %id)
AW167377 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 3781 to 4248 469 to 2   tiling clone,   468/469
(99 %)
0 diff
(100 %id)
AI634119 pooled germ cell tumors .b 3783 to 4239 464 to 8       457/464
(98 %)
0 diff
(100 %id)
AI333229 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 3789 to 4241 453 to 1       453/453
(100 %)
1 diff
(99.8 %id)
DB523826 testis .b 3790 to 4245 1 to 456     Submitted on the opposite strand 456/457
(99 %)
1 diff
(99.8 %id)
DB564921 hypothalamus .b 3792 to 4246 1 to 455     Submitted on the opposite strand 455/455
(100 %)
0 diff
(100 %id)
DB569087 hypothalamus .b 3803 to 4246 1 to 444     Submitted on the opposite strand 444/444
(100 %)
3 diff
(99.4 %id)
BX115454 adenocarcinoma, Pancreas .b 3805 to 4246 456 to 15   AAA   442/442
(100 %)
0 diff
(100 %id)
AI677831 adenocarcinoma, Pancreas .b 3816 to 4246 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AI696820 adenocarcinoma, Pancreas .b 3817 to 4246 430 to 1       430/430
(100 %)
0 diff
(100 %id)
BM687063 eye, optic nerve .b 3817 to 4236 9 to 428       420/428
(98 %)
6 diff
(98.6 %id)
T15939   .b 3839 to 4246 410 to 1       410/410
(100 %)
4 diff
(99.1 %id)
T23641   .b 3853 to 4248 399 to 2       398/399
(99 %)
0 diff
(100 %id)
R42043 whole brain .b 3855 to 4246 410 to 16   AAA   395/395
(100 %)
5 diff
(98.8 %id)
BQ027587 mixed .b 3857 to 4246 408 to 19   AAA   390/397
(98 %)
1 diff
(99.8 %id)
DB554157 hypothalamus .b 3864 to 4245 1 to 384     Submitted on the opposite strand 384/385
(99 %)
9 diff
(97.7 %id)
BM671590 eye, optic nerve .b 3876 to 4246 389 to 19   fully sequenced, AAA   371/371
(100 %)
0 diff
(100 %id)
CB049435 Prostate .b 3880 to 4248 388 to 20       369/388
(95 %)
0 diff
(100 %id)
Z40248 brain, total brain .b 3888 to 4240 353 to 1       353/353
(100 %)
0 diff
(100 %id)
AI160154 brain, glioblastoma (pooled) .b 3896 to 4246 367 to 17   AAA   351/351
(100 %)
14 diff
(96.1 %id)
H22917 whole brain .b 3898 to 4246 368 to 15   AAA   354/402
(88 %)
7 diff
(98.3 %id)
R38781 whole brain .b 3906 to 4248 348 to 7       342/348
(98 %)
0 diff
(100 %id)
AA636021 normal prostate, Prostate .b 3927 to 4173 247 to 1       247/247
(100 %)
0 diff
(100 %id)
BF056255 pooled germ cell tumors .b 3964 to 4246 283 to 1       283/283
(100 %)
0 diff
(100 %id)
T17103   .b 3987 to 4246 260 to 1       260/260
(100 %)
1 diff
(99.7 %id)
DB567196 hypothalamus .b 3995 to 4245 1 to 251     Submitted on the opposite strand 251/252
(99 %)
4 diff
(98.5 %id)
F04706 brain, total brain .b 4005 to 4240 236 to 1       236/238
(99 %)
0 diff
(100 %id)
T33534 brain .b 4056 to 4246 191 to 1       191/191
(100 %)
0 diff
(100 %id)
AA435813.
matches multiple genes
  .b 4130 to 4246 116 to 1     also hits gene EIF1B 116/116
(100 %)
1 diff
(99.2 %id)
DQ424905   .c 1 to 1893 1 to 1893 V85I F388S tiling clone,   1893/1893
(100 %)
6 diff
(99.7 %id)
AB042199   .d 1 to 1872 1 to 1872 exact tiling clone,   1872/1872
(100 %)
0 diff
(100 %id)
TI_57239072   .d 81 to 835 30 to 789       760/794
(95 %)
13 diff
(98.4 %id)
BI915060 brain .d 82 to 835 1 to 759       759/764
(99 %)
8 diff
(99.0 %id)
DB496174 hypothalamus .e 1 to 472 1 to 475   tiling clone,   475/476
(99 %)
13 diff
(97.3 %id)
BI545229 brain, hippocampus .e 40 to 833 1 to 809       807/809
(99 %)
26 diff
(96.8 %id)
TI_44165305   .e 45 to 833 129 to 932       802/932
(86 %)
23 diff
(97.6 %id)
DB636459 hippocampus .e 47 to 537 1 to 490       490/549
(89 %)
14 diff
(97.5 %id)
DB636576 hypothalamus .e 50 to 703 1 to 654       654/654
(100 %)
17 diff
(97.5 %id)
DB493886 hypothalamus .e 50 to 580 1 to 531       531/531
(100 %)
4 diff
(99.3 %id)
DB497989 hypothalamus .e 50 to 541 1 to 492       492/497
(98 %)
6 diff
(98.8 %id)
DB458326 testis .e 82 to 554 1 to 473       473/473
(100 %)
0 diff
(100 %id)
BI600127 brain, hypothalamus .e 109 to 904 1 to 808       808/854
(94 %)
31 diff
(96.4 %id)
TI_45211961   .e 110 to 904 85 to 891       807/937
(86 %)
33 diff
(96.5 %id)
BF509396   .e 131 to 342 212 to 1       212/212
(100 %)
5 diff
(97.7 %id)
CN368922 embryonic stem cells, cell lines H1, H7, andH9 .e 136 to 734 1 to 599   tiling clone,   599/599
(100 %)
1 diff
(99.9 %id)
AW295558   .e 142 to 342 201 to 1       201/201
(100 %)
5 diff
(97.6 %id)
DB636606 hypothalamus .e 503 to 1162 1 to 659   tiling clone,   659/659
(100 %)
1 diff
(99.9 %id)
BC139742 PCR rescued clones .f 1 to 1639 1 to 1639 exact tiling clone,   1639/1639
(100 %)
1 diff
(100.0 %id)
CN368923 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 143 to 733 1 to 591       591/591
(100 %)
1 diff
(99.9 %id)
AW449246   .g 1 to 504 1 to 504   tiling clone, Submitted on the opposite strand 504/504
(100 %)
0 diff
(100 %id)
BF855035 prostate_normal .g 210 to 495 1 to 288       288/288
(100 %)
6 diff
(98.0 %id)
BC036579 Brain, hypothalamus .g 360 to 3589 1 to 3230 L280V tiling clone, available from MGC, AAA   3230/3230
(100 %)
5 diff
(99.9 %id)
BG706486 brain, hypothalamus .g 360 to 924 1 to 570   available from MGC,   570/570
(100 %)
9 diff
(98.5 %id)
BF346764 anaplastic oligodendroglioma with 1p/19qloss, brain .g 1457 to 1950 1 to 500       500/500
(100 %)
20 diff
(96.0 %id)
BF345317 anaplastic oligodendroglioma with 1p/19qloss, brain .g 1457 to 2040 1 to 590   tiling clone,   590/590
(100 %)
15 diff
(97.5 %id)
BI824720 pooled brain, lung, testis .h 1 to 764 768 to 5   tiling clone, Submitted on the opposite strand 764/770
(99 %)
23 diff
(97.1 %id)
TI_57197048   .h 1 to 769 828 to 61 G14A V23L E81D R82G K83S ...   Submitted on the opposite strand 768/830
(92 %)
23 diff
(97.3 %id)
BF926710 nervous_tumor .i 1 to 478 500 to 21 L36S Q37A L38A A39G E40R ... tiling clone, Submitted on the opposite strand 480/500
(96 %)
1 diff
(99.8 %id)
BU741338 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene ARHGEF4, variant not shown       AAA This clone was ignored    
AK127124.
matches multiple genes
brain Gene ARHGEF4, variant not shown       available from FLJ, This clone was ignored, also hits gene wamomo    
AK127124.
matches multiple genes
brain Gene wamomo, variant not shown       available from FLJ, This clone was ignored, also hits gene wamomo    
BG715204 brain, hypothalamus Gene ARHGEF4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI