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Gene ARHGEF2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
399 supporting clones for gene ARHGEF2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CN388797 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1 to 715 1 to 715   tiling clone,   715/715
(100 %)
1 diff
(99.9 %id)
AL527706 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 2 to 1030 1 to 1018   tiling clone,   1018/1055
(96 %)
17 diff
(98.4 %id)
CN388788 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 22 to 444 1 to 423   tiling clone,   423/423
(100 %)
3 diff
(99.3 %id)
NM_001162384.1   .a 24 to 4202 1 to 4179   RefSeq, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 4179/4179
(100 %)
0 diff
(100 %id)
CN388791 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 31 to 578 1 to 547       547/547
(100 %)
1 diff
(99.9 %id)
CN388794 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 38 to 754 1 to 719       719/719
(100 %)
5 diff
(99.4 %id)
CN388789 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 41 to 589 1 to 550       550/550
(100 %)
2 diff
(99.7 %id)
BF347667 anaplastic oligodendroglioma with 1p/19qloss, brain .a 44 to 796 1 to 767       759/767
(98 %)
64 diff
(91.7 %id)
CN388790 embryonic stem cells, cell lines H1, H7, andH9 .a 62 to 213 1 to 152       152/152
(100 %)
0 diff
(100 %id)
BM147281 leukopheresis .a 77 to 417 1 to 341       341/345
(98 %)
21 diff
(94.0 %id)
BM194034 leukopheresis .a 77 to 471 1 to 396       396/401
(98 %)
10 diff
(97.6 %id)
BM148205 leukopheresis .a 77 to 510 1 to 434       434/434
(100 %)
4 diff
(99.1 %id)
BX383540   .a 94 to 1005 1 to 908       908/958
(94 %)
9 diff
(99.1 %id)
CN388800 embryonic stem cells, cell lines H1, H7, andH9 .a 109 to 451 1 to 343       343/343
(100 %)
2 diff
(99.5 %id)
AF486838   .a 142 to 3099 1 to 2958   tiling clone,   2958/2958
(100 %)
0 diff
(100 %id)
BX383539   .a 3072 to 4150 1069 to 1       1069/1107
(96 %)
17 diff
(98.5 %id)
AA337820 endometrium .a 3095 to 3349 1 to 255   tiling clone,   255/255
(100 %)
1 diff
(99.7 %id)
AL527705 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .a 3102 to 4157 1051 to 1   tiling clone,   1051/1110
(94 %)
16 diff
(98.6 %id)
BM710217 eye, optic nerve .a 3102 to 3375 1 to 274   tiling clone,   274/274
(100 %)
2 diff
(99.3 %id)
BQ215094 large cell carcinoma, lung .a 3229 to 4086 11 to 870       860/870
(98 %)
6 diff
(99.4 %id)
AL133991 brain .a 3275 to 3598 1 to 324       324/324
(100 %)
0 diff
(100 %id)
AA302592 aorta .a 3280 to 3573 1 to 294       294/294
(100 %)
0 diff
(100 %id)
BM810190 amelanotic melanoma, cell line, skin .a 3294 to 3921 1 to 628       628/1178
(53 %)
17 diff
(98.6 %id)
BM463914 melanotic melanoma, skin .a 3301 to 4098 6 to 820       815/1145
(71 %)
6 diff
(99.5 %id)
BM725497 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3338 to 3761 1 to 424   fully sequenced,   424/424
(100 %)
1 diff
(99.8 %id)
CN333596 embryonic stem cells, DMSO-treated H9 cellline .a 3345 to 3954 1 to 610       610/610
(100 %)
1 diff
(99.9 %id)
TI_149288977   .a 3359 to 4186 902 to 86   AAA   817/823
(99 %)
17 diff
(98.0 %id)
BM998811 lung, Lung Focal Fibrosis .a 3361 to 3957 1 to 592     Submitted on the opposite strand 592/593
(99 %)
16 diff
(97.4 %id)
BG546139 lung .a 3366 to 4107 1 to 737       737/738
(99 %)
19 diff
(97.5 %id)
AA476983 ovarian tumor, ovary .a 3383 to 3817 12 to 446       435/446
(97 %)
6 diff
(98.7 %id)
TI_149290573   .a 3383 to 4186 877 to 88   AAA   790/930
(84 %)
19 diff
(98.0 %id)
AA442659   .a 3385 to 3757 1 to 372       372/372
(100 %)
5 diff
(98.7 %id)
AW391499 stomach .a 3408 to 3717 321 to 6       316/321
(98 %)
0 diff
(100 %id)
AA427441 ovarian tumor, ovary .a 3411 to 3701 1 to 290       290/290
(100 %)
2 diff
(99.4 %id)
AW328685 cervix .a 3418 to 3945 1 to 528       528/528
(100 %)
2 diff
(99.7 %id)
BM727175 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3446 to 3821 1 to 376   fully sequenced,   376/376
(100 %)
1 diff
(99.8 %id)
TI_154026039   .a 3453 to 4188 819 to 88   AAA   732/791
(92 %)
70 diff
(91.2 %id)
CA307106 Alveolar Macrophage, lung .a 3464 to 4186 740 to 19   AAA   722/722
(100 %)
4 diff
(99.5 %id)
TI_149286205   .a 3476 to 4188 798 to 87   AAA   712/714
(99 %)
10 diff
(98.6 %id)
CN422722 embryonic stem cells, DMSO-treated H9 cellline .a 3483 to 4175 1 to 695       695/695
(100 %)
2 diff
(99.8 %id)
AJ709371 heart .a 3485 to 4023 5 to 543       539/543
(99 %)
6 diff
(98.9 %id)
TI_149283882   .a 3493 to 4186 797 to 103   AAA   695/695
(100 %)
12 diff
(98.3 %id)
TI_149293052   .a 3494 to 4186 751 to 61   AAA   691/780
(88 %)
12 diff
(98.5 %id)
CA308238 Alveolar Macrophage, lung .a 3499 to 4186 706 to 19   AAA   688/688
(100 %)
2 diff
(99.8 %id)
BE906292 epithelioid carcinoma, Pancreas .a 3501 to 4139 641 to 1     Submitted on the opposite strand 641/1098
(58 %)
4 diff
(99.7 %id)
BF978962 melanotic melanoma, high MDR, skin .a 3511 to 4185 1 to 673   AAA   673/673
(100 %)
18 diff
(97.4 %id)
CA426565 cell lines, Chondrosarcoma .a 3521 to 4186 684 to 19   AAA   666/666
(100 %)
1 diff
(99.9 %id)
AA334688   .a 3524 to 3759 1 to 236       236/236
(100 %)
0 diff
(100 %id)
T28326 colon, embryo .a 3524 to 3762 1 to 239       239/239
(100 %)
1 diff
(99.6 %id)
CB529843 Aveolar Macrophage, lung .a 3548 to 4147 619 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 601/601
(100 %)
12 diff
(98.1 %id)
BM671198 eye, optic nerve .a 3574 to 4186 631 to 19   AAA   613/613
(100 %)
0 diff
(100 %id)
AA232988 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3584 to 3860 1 to 275   fully sequenced,   275/275
(100 %)
2 diff
(99.3 %id)
BM931035 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3597 to 4186 1 to 590   AAA   590/590
(100 %)
0 diff
(100 %id)
CK902798 Pancreas, Purified pancreatic islet .a 3617 to 4190 580 to 6     Submitted on the opposite strand 575/580
(99 %)
0 diff
(100 %id)
CA771874 Pancreas, Purified pancreatic islet .a 3628 to 4190 564 to 1       564/564
(100 %)
6 diff
(99.0 %id)
BM970679 lung .a 3635 to 4186 570 to 19   AAA   552/552
(100 %)
0 diff
(100 %id)
CA424226 cell lines, Chondrosarcoma .a 3635 to 4186 570 to 19   AAA   552/552
(100 %)
0 diff
(100 %id)
AA362216   .a 3636 to 3954 21 to 341       321/342
(93 %)
4 diff
(98.9 %id)
CA306609 Alveolar Macrophage, lung .a 3636 to 4188 569 to 17   AAA   553/553
(100 %)
0 diff
(100 %id)
BM973466 lung .a 3637 to 4186 569 to 19   AAA   551/551
(100 %)
1 diff
(99.9 %id)
CA414794 Chondrosarcoma Grade II, Left Pelvis .a 3637 to 4188 571 to 19   AAA   553/553
(100 %)
3 diff
(99.5 %id)
BU619595 Cell Line, Chondrosarcoma .a 3637 to 4186 571 to 19   AAA   553/553
(100 %)
3 diff
(99.5 %id)
BM984270 lung .a 3640 to 4186 567 to 19   AAA   549/549
(100 %)
2 diff
(99.7 %id)
BU681017 lung .a 3641 to 4188 565 to 17   AAA   549/549
(100 %)
2 diff
(99.7 %id)
BG471723 eye, retinoblastoma .a 3642 to 4187 1 to 549   available from MGC,   549/624
(87 %)
10 diff
(98.4 %id)
BC027722 Eye, retinoblastoma .a 3643 to 4186 8 to 551   available from MGC, AAA   544/544
(100 %)
0 diff
(100 %id)
BF433862 carcinoid, lung .a 3647 to 4186 552 to 13   AAA   540/540
(100 %)
1 diff
(99.9 %id)
BG058484 blood, lymphocyte .a 3648 to 4187 541 to 2       540/541
(99 %)
0 diff
(100 %id)
AA318589 Spleen .a 3651 to 3937 1 to 289       289/291
(99 %)
5 diff
(98.3 %id)
AI811316 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 3665 to 4190 531 to 6       526/531
(99 %)
0 diff
(100 %id)
BQ329624 lung_normal .a 3669 to 3902 234 to 1       234/251
(93 %)
2 diff
(99.3 %id)
CN422724 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3669 to 4186 1 to 518   AAA   518/518
(100 %)
1 diff
(99.9 %id)
AW629503 pooled .a 3670 to 4190 521 to 1       521/521
(100 %)
3 diff
(99.5 %id)
BP430073   .a 3670 to 4015 1 to 346       346/346
(100 %)
2 diff
(99.5 %id)
BP431508   .a 3670 to 4040 1 to 371       371/371
(100 %)
2 diff
(99.5 %id)
H45226 brain .a 3681 to 3993 1 to 322   fully sequenced,   322/322
(100 %)
4 diff
(98.8 %id)
AW664394 2 pooled high-grade transitional celltumors, genitourinary tract .a 3681 to 4147 467 to 1       467/467
(100 %)
0 diff
(100 %id)
AW243179 Kidney .a 3682 to 4186 505 to 1       505/505
(100 %)
0 diff
(100 %id)
AI740912 pooled .a 3688 to 4190 504 to 2       503/504
(99 %)
0 diff
(100 %id)
BF850910 lung_normal .a 3692 to 4291 1 to 600   tiling clone,   600/605
(99 %)
17 diff
(97.2 %id)
BF475916 Prostate .a 3692 to 4186 495 to 1       495/495
(100 %)
1 diff
(99.8 %id)
AI478583 Kidney .a 3695 to 3839 162 to 18       145/162
(89 %)
0 diff
(100 %id)
AI990141 pooled germ cell tumors .a 3697 to 4187 491 to 1       491/491
(100 %)
1 diff
(99.8 %id)
TI_149304756   .a 3700 to 4186 597 to 96   AAA   502/504
(99 %)
24 diff
(95.3 %id)
DB568092 hypothalamus .a 3702 to 4186 1 to 485     Submitted on the opposite strand 485/485
(100 %)
1 diff
(99.8 %id)
BF435639 sciatic nerve .a 3703 to 4186 484 to 1       484/484
(100 %)
0 diff
(100 %id)
AA889688   .a 3707 to 4190 485 to 2       484/485
(99 %)
0 diff
(100 %id)
R85114 brain .a 3710 to 4148 439 to 1       439/439
(100 %)
13 diff
(97.1 %id)
BE046971 pooled germ cell tumors .a 3711 to 4186 477 to 1       477/477
(100 %)
2 diff
(99.6 %id)
BF245220 brain, glioblastoma .a 3712 to 4185 1 to 474   AAA   474/474
(100 %)
13 diff
(97.3 %id)
BF115067 Kidney .a 3713 to 4186 474 to 1       474/474
(100 %)
0 diff
(100 %id)
BG255135 adenocarcinoma, cell line, Prostate .a 3715 to 4186 1 to 474   AAA   474/474
(100 %)
5 diff
(99.0 %id)
CN482803 eye .a 3718 to 4190 1 to 473       473/473
(100 %)
1 diff
(99.8 %id)
AI628673 Kidney .a 3720 to 4186 482 to 16   AAA   467/467
(100 %)
0 diff
(100 %id)
BF111098 carcinoid, lung .a 3721 to 4187 469 to 3       467/469
(99 %)
0 diff
(100 %id)
AA719239   .a 3722 to 4187 467 to 3       465/467
(99 %)
0 diff
(100 %id)
AI652215 pooled germ cell tumors .a 3724 to 4177 462 to 11       452/462
(97 %)
0 diff
(100 %id)
DB542512 hippocampus .a 3726 to 4186 1 to 461     Submitted on the opposite strand 461/461
(100 %)
2 diff
(99.6 %id)
AI685536 Prostate .a 3727 to 4186 459 to 1       459/459
(100 %)
1 diff
(99.8 %id)
W96127 heart .a 3730 to 4186 459 to 1       459/459
(100 %)
2 diff
(99.6 %id)
BM678133 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3731 to 4186 475 to 19   fully sequenced, AAA   457/457
(100 %)
1 diff
(99.8 %id)
N41044 multiple sclerosis lesions .a 3732 to 4186 457 to 1       457/461
(99 %)
3 diff
(99.4 %id)
BF222923 pooled germ cell tumors .a 3732 to 4187 457 to 2       456/457
(99 %)
0 diff
(100 %id)
AI697523 carcinoid, lung .a 3736 to 4187 452 to 1       452/452
(100 %)
1 diff
(99.8 %id)
AI925929 Kidney .a 3736 to 4202 479 to 13   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 467/467
(100 %)
3 diff
(99.4 %id)
AW070970 pooled .a 3736 to 4190 455 to 1       455/455
(100 %)
2 diff
(99.6 %id)
DB520412 testis .a 3737 to 4186 1 to 450     Submitted on the opposite strand 450/450
(100 %)
1 diff
(99.8 %id)
AI146749 B-cell, chronic lymphotic leukemia .a 3737 to 4187 453 to 3       451/453
(99 %)
0 diff
(100 %id)
AW328716 cervix .a 3737 to 4186 472 to 23   AAA   450/450
(100 %)
1 diff
(99.8 %id)
AI082046 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3741 to 4190 453 to 3       451/453
(99 %)
0 diff
(100 %id)
AI694462 carcinoid, lung .a 3742 to 4175 441 to 11       431/441
(97 %)
0 diff
(100 %id)
AI051660 B-cell, chronic lymphotic leukemia .a 3744 to 4190 452 to 6       447/452
(98 %)
0 diff
(100 %id)
AI627337 Kidney .a 3744 to 4186 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
AI151268 uterus .a 3745 to 4187 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
AW300563 Kidney .a 3746 to 4189 444 to 1   tiling clone,   444/444
(100 %)
0 diff
(100 %id)
BM145373 leukopheresis .a 3748 to 4186 454 to 17   AAA   438/438
(100 %)
6 diff
(98.7 %id)
AW317031 adenocarcinoma, Pancreas .a 3750 to 4187 439 to 2       438/439
(99 %)
0 diff
(100 %id)
AI634254 adenocarcinoma, Pancreas .a 3752 to 4188 437 to 1       437/437
(100 %)
1 diff
(99.8 %id)
DB519317 testis .a 3754 to 4186 1 to 433     Submitted on the opposite strand 433/434
(99 %)
3 diff
(99.4 %id)
DB553700 hypothalamus .a 3754 to 4186 1 to 433     Submitted on the opposite strand 433/433
(100 %)
3 diff
(99.4 %id)
AI142893 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3755 to 4186 444 to 12   AAA   433/433
(100 %)
1 diff
(99.8 %id)
AI261668 Kidney .a 3755 to 4188 434 to 1       434/434
(100 %)
0 diff
(100 %id)
AI651949 pooled germ cell tumors .a 3756 to 4186 453 to 23   AAA   431/431
(100 %)
0 diff
(100 %id)
BP429270   .a 3756 to 4095 1 to 340       340/340
(100 %)
1 diff
(99.8 %id)
AI671402 Kidney .a 3757 to 4186 430 to 1       430/430
(100 %)
0 diff
(100 %id)
AA932498 carcinoid, lung .a 3759 to 4185 427 to 1       427/427
(100 %)
3 diff
(99.3 %id)
BM144435 leukopheresis .a 3760 to 4190 443 to 13       431/443
(97 %)
0 diff
(100 %id)
DB510312 testis .a 3761 to 4186 1 to 424     Submitted on the opposite strand 424/424
(100 %)
9 diff
(97.9 %id)
AA569947 breast .a 3761 to 4186 437 to 12   AAA   426/426
(100 %)
1 diff
(99.8 %id)
BF476422 Prostate .a 3761 to 4187 431 to 2       430/431
(99 %)
0 diff
(100 %id)
AI460282 colon .a 3762 to 4187 428 to 3       426/428
(99 %)
0 diff
(100 %id)
AI611630 pooled germ cell tumors .a 3763 to 4186 424 to 1       424/424
(100 %)
0 diff
(100 %id)
BQ438998 melanotic melanoma, skin .a 3769 to 4188 461 to 44   AAA Submitted on the opposite strand 418/427
(97 %)
4 diff
(99.1 %id)
BI494206 cochlea, ear .a 3773 to 4185 8 to 420       413/420
(98 %)
6 diff
(98.6 %id)
AA227983 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3778 to 4186 409 to 1       409/409
(100 %)
3 diff
(99.3 %id)
AA961005 carcinoid, lung .a 3782 to 4186 405 to 1       405/406
(99 %)
8 diff
(98.1 %id)
DB509052 testis .a 3783 to 4186 1 to 406     Submitted on the opposite strand 406/406
(100 %)
18 diff
(95.6 %id)
AW270926 Kidney .a 3784 to 4190 410 to 4       407/410
(99 %)
0 diff
(100 %id)
AA427442 ovarian tumor, ovary .a 3785 to 4190 409 to 4       406/409
(99 %)
0 diff
(100 %id)
AA582910 colon, colon tumor RER+ .a 3787 to 4187 403 to 3       401/403
(99 %)
0 diff
(100 %id)
AA410859 ovarian tumor, ovary .a 3788 to 4184 1 to 397   fully sequenced,   397/397
(100 %)
0 diff
(100 %id)
AA714905 Ewing's sarcoma .a 3788 to 4185 398 to 1       398/400
(99 %)
0 diff
(100 %id)
AI004031 pooled .a 3789 to 4186 409 to 12   AAA   398/398
(100 %)
2 diff
(99.5 %id)
AA725021 pooled .a 3791 to 4187 399 to 3       397/402
(98 %)
0 diff
(100 %id)
AA827087 germinal center B cell .a 3791 to 4186 417 to 22   AAA   396/400
(99 %)
0 diff
(100 %id)
BM681643 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3791 to 4188 413 to 17   fully sequenced, AAA   397/397
(100 %)
1 diff
(99.8 %id)
AA464682 ovarian tumor, ovary .a 3795 to 4172 1 to 378   fully sequenced,   378/378
(100 %)
2 diff
(99.5 %id)
AI800729 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3798 to 4186 414 to 26   AAA   389/389
(100 %)
8 diff
(98.0 %id)
AI688138 pooled .a 3803 to 4190 391 to 4       388/391
(99 %)
0 diff
(100 %id)
AA604539 lung, lung tumor .a 3805 to 4185 381 to 1       381/381
(100 %)
0 diff
(100 %id)
AI382041 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3805 to 4187 384 to 2       383/384
(99 %)
0 diff
(100 %id)
AI167597 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3808 to 4177 376 to 7       370/376
(98 %)
0 diff
(100 %id)
AA806040 germinal center B cell .a 3813 to 4186 403 to 30   AAA   374/374
(100 %)
0 diff
(100 %id)
AI218599 pooled .a 3813 to 4187 377 to 3       375/377
(99 %)
0 diff
(100 %id)
BG223181 nasopharynx, normal epithelium .a 3824 to 4186 379 to 17   AAA   363/369
(98 %)
0 diff
(100 %id)
AA243745 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3830 to 4186 357 to 1   fully sequenced,   357/357
(100 %)
0 diff
(100 %id)
AA877755 colon, colon tumor RER+ .a 3832 to 4187 356 to 1       356/356
(100 %)
1 diff
(99.8 %id)
AA493597 thyroid .a 3834 to 4186 1 to 354       354/354
(100 %)
5 diff
(98.6 %id)
BE244543 leukopheresis .a 3837 to 4184 349 to 3       347/349
(99 %)
0 diff
(100 %id)
BI493424 cochlea, ear .a 3838 to 4186 1 to 350   fully sequenced, AAA   350/350
(100 %)
6 diff
(98.3 %id)
AW769426 colon, moderately-differentiated adenocarcinoma .a 3840 to 4190 346 to 1       346/405
(85 %)
11 diff
(97.3 %id)
BM971361 lung .a 3840 to 4186 367 to 19   AAA   349/349
(100 %)
3 diff
(99.2 %id)
BE501440 Kidney .a 3845 to 4186 355 to 14   AAA   342/342
(100 %)
0 diff
(100 %id)
AA095620   .a 3848 to 4003 1 to 153       153/154
(99 %)
6 diff
(96.2 %id)
AW878570 ovary .a 3850 to 4101 1 to 252       252/252
(100 %)
0 diff
(100 %id)
BE464399 Kidney .a 3857 to 4186 330 to 1       330/330
(100 %)
0 diff
(100 %id)
AA767604 germinal center B cell .a 3860 to 4186 338 to 12   AAA   327/327
(100 %)
1 diff
(99.7 %id)
AA973121 pooled .a 3860 to 4190 335 to 4       332/335
(99 %)
0 diff
(100 %id)
AI078609 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3860 to 4190 335 to 4       332/335
(99 %)
0 diff
(100 %id)
BI493423 cochlea, ear .a 3883 to 4186 324 to 20   fully sequenced, AAA   305/305
(100 %)
3 diff
(99.1 %id)
BE825234 colon_normal .a 3891 to 4017 132 to 6       127/132
(96 %)
0 diff
(100 %id)
AW090220 brain, tumor, 5 pooled (see description) .a 3891 to 4146 258 to 3       256/258
(99 %)
0 diff
(100 %id)
AA377474 synovial membrane .a 3896 to 4179 284 to 1     Submitted on the opposite strand 284/284
(100 %)
0 diff
(100 %id)
BU852038 mixed (pool of 40 RNAs) .a 3905 to 4186 1 to 282       282/286
(98 %)
2 diff
(99.4 %id)
AI830519 Kidney .a 3906 to 4188 282 to 1       282/282
(100 %)
4 diff
(98.6 %id)
BM988070 mixed .a 3932 to 4186 274 to 19   AAA   256/257
(99 %)
2 diff
(99.3 %id)
DB533691 hippocampus .a 3935 to 4186 1 to 253     Submitted on the opposite strand 253/253
(100 %)
15 diff
(94.1 %id)
AI701308 adenocarcinoma, Pancreas .a 3935 to 4190 258 to 2       257/258
(99 %)
0 diff
(100 %id)
BF478197 pooled germ cell tumors .a 3936 to 4186 267 to 17   AAA   251/251
(100 %)
0 diff
(100 %id)
BM146020 leukopheresis .a 3938 to 4186 265 to 17   AAA   249/257
(96 %)
2 diff
(99.3 %id)
BF732265 fibrotheoma, ovary .a 3947 to 4190 251 to 6       246/251
(98 %)
0 diff
(100 %id)
AI468620 Kidney .a 3955 to 4190 237 to 1       237/237
(100 %)
2 diff
(99.2 %id)
AI422570 brain, glioblastoma (pooled) .a 3957 to 4186 230 to 1       230/230
(100 %)
0 diff
(100 %id)
AI873048 pooled .a 3959 to 4190 234 to 1       234/234
(100 %)
3 diff
(98.8 %id)
H45196 brain .a 3963 to 4190 232 to 1   fully sequenced,   232/232
(100 %)
4 diff
(98.3 %id)
AA336009 epididymis .a 3965 to 4164 1 to 200       200/200
(100 %)
1 diff
(99.5 %id)
AW629293 pooled .a 3979 to 4190 214 to 3       212/214
(99 %)
0 diff
(100 %id)
AA235631 ovarian tumor, ovary .a 3984 to 4186 203 to 1   fully sequenced,   203/203
(100 %)
0 diff
(100 %id)
BM782554 stomach .a 3995 to 4186 1 to 192   AAA   192/192
(100 %)
0 diff
(100 %id)
AA502339 colon .a 3998 to 4186 189 to 1       189/189
(100 %)
1 diff
(99.5 %id)
ES314441 occipital scalp hair, skin .a 4002 to 4186 202 to 18   AAA Submitted on the opposite strand 185/185
(100 %)
0 diff
(100 %id)
AI701994 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 4020 to 4186 183 to 17   AAA   167/167
(100 %)
1 diff
(99.5 %id)
AW051220 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 4031 to 4187 157 to 1       157/157
(100 %)
0 diff
(100 %id)
GD136556   .a 4034 to 4157 1 to 123       123/129
(95 %)
2 diff
(98.5 %id)
GD136388   .a 4043 to 4147 8 to 112   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 105/112
(93 %)
6 diff
(94.7 %id)
BE670873 carcinoid, lung .a 4050 to 4187 140 to 3       138/140
(98 %)
0 diff
(100 %id)
AA464578 ovarian tumor, ovary .a 4088 to 4170 83 to 1   fully sequenced,   83/83
(100 %)
0 diff
(100 %id)
BF172724 blood .a 4171 to 4354 1 to 186   tiling clone,   186/186
(100 %)
5 diff
(97.4 %id)
AB014551 Spleen .b 1 to 4074 1 to 4073 exact tiling clone, available from KIAA,   4073/4073
(100 %)
2 diff
(100.0 %id)
AW361910 colon .b 288 to 618 1 to 331       331/332
(99 %)
2 diff
(99.4 %id)
CN388798 embryonic stem cells, cell lines H1, H7, andH9 .b 331 to 803 1 to 473       473/473
(100 %)
0 diff
(100 %id)
BF875076 lung_tumor .b 433 to 598 1 to 165       165/179
(92 %)
2 diff
(98.9 %id)
BF740524 bocio_tumor .b 459 to 571 114 to 7     Submitted on the opposite strand 108/115
(93 %)
0 diff
(100 %id)
BF895990 marrow .b 462 to 628 167 to 1     Submitted on the opposite strand 167/167
(100 %)
0 diff
(100 %id)
TI_1948082491   .b 472 to 968 130 to 627       498/1316
(37 %)
18 diff
(98.7 %id)
AW945420 lung_normal .b 661 to 1168 13 to 400       398/400
(99 %)
57 diff
(85.8 %id)
BG015916 placenta_normal .b 665 to 903 18 to 254       236/261
(90 %)
9 diff
(96.6 %id)
BI824182 pooled brain, lung, testis .b 685 to 1482 1 to 807       807/809
(99 %)
37 diff
(95.5 %id)
TI_57202261   .b 685 to 1434 36 to 793       758/844
(89 %)
31 diff
(96.4 %id)
BE174682 head_neck .b 766 to 932 40 to 205       166/205
(80 %)
8 diff
(96.1 %id)
BF349572 head_neck .b 897 to 1488 25 to 616       592/622
(95 %)
10 diff
(98.4 %id)
CA453982   .b 969 to 1847 1 to 879       879/879
(100 %)
8 diff
(99.1 %id)
CO245882 Chondrosarcoma Lung Metastasis cell lines, lung .b 1014 to 1488 40 to 514       475/742
(64 %)
15 diff
(98.0 %id)
BX370304   .b 1076 to 1677 1 to 599       579/599
(96 %)
34 diff
(94.4 %id)
BU176691 eye, retinoblastoma .b 1094 to 1540 1 to 451       451/884
(51 %)
4 diff
(99.6 %id)
BG576010 breast, mammary adenocarcinoma, cell line .b 1139 to 1904 17 to 778       762/783
(97 %)
9 diff
(98.9 %id)
TI_45213798   .b 1253 to 1930 80 to 756       677/756
(89 %)
7 diff
(99.1 %id)
BI598689 brain, hypothalamus .b 1258 to 1930 1 to 672       672/672
(100 %)
5 diff
(99.3 %id)
BE785987 large cell carcinoma, lung .b 1275 to 1794 1 to 358       358/358
(100 %)
10 diff
(97.3 %id)
BQ684980 ductal carcinoma, cell line, Pancreas .b 1367 to 2111 1 to 748       748/989
(75 %)
17 diff
(98.3 %id)
CD619239   .b 1376 to 1945 1 to 570       570/570
(100 %)
6 diff
(99.0 %id)
CD619238   .b 1387 to 1937 586 to 36       551/586
(94 %)
0 diff
(100 %id)
CN388793 embryonic stem cells, cell lines H1, H7, andH9 .b 1417 to 1775 1 to 359       359/359
(100 %)
0 diff
(100 %id)
BE818983 breast_normal .b 1458 to 1874 414 to 1       414/414
(100 %)
8 diff
(98.1 %id)
TI_154197943   .b 1469 to 2377 98 to 1004       907/1001
(90 %)
33 diff
(96.8 %id)
TI_154196311   .b 1525 to 2105 73 to 657       585/1062
(55 %)
22 diff
(98.0 %id)
BE794253 lung, small cell carcinoma .b 1701 to 2533 1 to 840       840/1149
(73 %)
28 diff
(97.6 %id)
BQ951038 large cell carcinoma, lung .b 1710 to 2560 1 to 852       852/929
(91 %)
10 diff
(99.0 %id)
BU540492 large cell carcinoma, lung .b 1710 to 2600 1 to 895       895/896
(99 %)
12 diff
(98.7 %id)
CO246749 Chondrosarcoma Lung Metastasis cell lines, lung .b 1722 to 2470 1 to 739       739/810
(91 %)
19 diff
(97.7 %id)
BQ918815 large cell carcinoma, lung .b 1783 to 2705 1 to 926       926/926
(100 %)
32 diff
(96.6 %id)
CK431120 eye, lacrimal gland .b 1783 to 2439 1 to 657       657/657
(100 %)
0 diff
(100 %id)
BE894196 melanotic melanoma, skin .b 1785 to 2336 1 to 553       553/553
(100 %)
2 diff
(99.7 %id)
AW368143 head_neck .b 1806 to 2227 1 to 422       422/422
(100 %)
3 diff
(99.3 %id)
BE791372 lung, small cell carcinoma .b 1806 to 2560 1 to 749       749/761
(98 %)
20 diff
(97.4 %id)
AL138205 brain .b 1837 to 2352 1 to 516       516/516
(100 %)
0 diff
(100 %id)
CN422725 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1844 to 2449 1 to 606       606/606
(100 %)
0 diff
(100 %id)
BF901364 marrow .b 1848 to 2153 1 to 306       306/306
(100 %)
0 diff
(100 %id)
BG828879 muscle, rhabdomyosarcoma .b 1912 to 2506 1 to 595       595/595
(100 %)
4 diff
(99.4 %id)
BM007318 Spleen .b 1980 to 2841 1 to 857       857/892
(96 %)
38 diff
(95.8 %id)
TI_59382473   .b 1981 to 2841 58 to 913       856/891
(96 %)
37 diff
(95.9 %id)
BQ707787 Spleen .b 1982 to 2893 1 to 929       929/932
(99 %)
29 diff
(96.9 %id)
BX281587 lymph, lymphoma, cell line .b 2041 to 2509 1 to 469       469/469
(100 %)
3 diff
(99.4 %id)
BM458547 lymph, lymphoma, cell line .b 2044 to 2990 1 to 958       958/1112
(86 %)
26 diff
(97.7 %id)
BE867527 adenocarcinoma, colon .b 2100 to 2651 8 to 559       555/801
(69 %)
19 diff
(97.7 %id)
BQ213881 large cell carcinoma, lung .b 2134 to 2821 26 to 718       693/859
(80 %)
20 diff
(97.7 %id)
BE208109 carcinoma cell line, cervix .b 2168 to 2724 1 to 557     Submitted on the opposite strand 557/557
(100 %)
8 diff
(98.6 %id)
BE939802 uterus_tumor .b 2201 to 2642 1 to 442       442/442
(100 %)
1 diff
(99.8 %id)
BG390489 embryonal carcinoma, cell line, testis .b 2260 to 3083 1 to 812       810/999
(81 %)
39 diff
(96.1 %id)
BQ681407 melanotic melanoma, cell line, skin .b 2263 to 2846 1 to 583       583/987
(59 %)
13 diff
(98.7 %id)
BF307703 muscle, rhabdomyosarcoma .b 2267 to 3049 1 to 764       764/882
(86 %)
39 diff
(95.6 %id)
BF309829 muscle, rhabdomyosarcoma .b 2267 to 3032 1 to 762       762/834
(91 %)
28 diff
(96.7 %id)
BG829221 muscle, rhabdomyosarcoma .b 2267 to 3029 1 to 761       761/763
(99 %)
4 diff
(99.5 %id)
BI114666 muscle, rhabdomyosarcoma .b 2267 to 2901 1 to 641       641/734
(87 %)
26 diff
(96.5 %id)
X15610   .b 2278 to 3923 1 to 1640       1640/1640
(100 %)
10 diff
(99.4 %id)
BE267713 Burkitt lymphoma, lymph .b 2339 to 2904 1 to 588       585/589
(99 %)
27 diff
(95.5 %id)
AI143555 heart .b 2342 to 2675 423 to 90       334/499
(66 %)
3 diff
(99.4 %id)
BG332536 large cell carcinoma, lung .b 2349 to 3085 1 to 736       736/774
(95 %)
15 diff
(98.1 %id)
BG489674 large cell carcinoma, lung .b 2349 to 3124 1 to 779       779/779
(100 %)
21 diff
(97.4 %id)
BF305830 muscle, rhabdomyosarcoma .b 2381 to 3201 1 to 798       803/842
(95 %)
38 diff
(95.5 %id)
BG824879 muscle, rhabdomyosarcoma .b 2381 to 2985 1 to 620       620/620
(100 %)
22 diff
(96.5 %id)
DB455008 testis .b 2419 to 2902 1 to 484       484/484
(100 %)
0 diff
(100 %id)
CF132077 Chondrosarcoma Lung Metastasis cell lines, lung .b 2436 to 3229 1 to 795       795/795
(100 %)
2 diff
(99.8 %id)
TI_159677808   .b 2436 to 3274 44 to 881       838/1040
(80 %)
8 diff
(99.3 %id)
BE796842 lung, small cell carcinoma .b 2446 to 3208 1 to 766       766/766
(100 %)
14 diff
(98.2 %id)
BM464941 lymph, lymphoma, cell line .b 2451 to 3336 4 to 891       888/1068
(83 %)
19 diff
(98.3 %id)
BQ954338 large cell carcinoma, lung .b 2456 to 3050 1 to 604       604/999
(60 %)
11 diff
(98.9 %id)
TI_57147464   .b 2501 to 3345 79 to 932       853/933
(91 %)
38 diff
(96.0 %id)
BI759972 pooled colon, kidney, stomach .b 2508 to 3345 1 to 847       846/848
(99 %)
32 diff
(96.3 %id)
BU854925 ovary, teratocarcinoma, cell line .b 2552 to 3388 9 to 856       848/941
(90 %)
8 diff
(99.2 %id)
TI_1948082492   .b 2558 to 3347 918 to 128       791/1117
(70 %)
8 diff
(99.3 %id)
BU855345 ovary, teratocarcinoma, cell line .b 2559 to 3406 18 to 874       859/875
(98 %)
15 diff
(98.3 %id)
TI_1948082051   .b 2559 to 3347 919 to 131       789/1133
(69 %)
10 diff
(99.2 %id)
TI_1948081833   .b 2561 to 3347 915 to 129       787/1115
(70 %)
13 diff
(98.9 %id)
BQ228537 melanotic melanoma, skin .b 2579 to 3468 1 to 899       899/901
(99 %)
32 diff
(96.5 %id)
TI_43961620   .b 2582 to 3165 59 to 643       585/643
(90 %)
6 diff
(99.1 %id)
BI489742 pooled brain, lung, testis .b 2585 to 3165 1 to 582       582/582
(100 %)
6 diff
(99.0 %id)
BG248725 adenocarcinoma cell line, colon .b 2586 to 3325 1 to 728       728/730
(99 %)
21 diff
(97.2 %id)
TI_1948082257   .b 2646 to 3341 836 to 138       699/1098
(63 %)
13 diff
(98.9 %id)
BF204733 muscle, rhabdomyosarcoma .b 2901 to 3481 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BG472077 eye, retinoblastoma .b 2905 to 3466 1 to 569       566/651
(86 %)
14 diff
(97.9 %id)
BE251684 eye, retinoblastoma .b 2925 to 3612 1 to 689       689/812
(84 %)
11 diff
(98.7 %id)
BE253773 eye, retinoblastoma .b 2925 to 3214 1 to 290       290/293
(98 %)
1 diff
(99.7 %id)
TI_57217562   .b 2982 to 3869 66 to 956       891/957
(93 %)
35 diff
(96.4 %id)
BI754140 brain .b 2985 to 3869 1 to 888       888/889
(99 %)
30 diff
(96.7 %id)
CX872187 embryonic stem .b 3016 to 3780 1 to 765       765/765
(100 %)
0 diff
(100 %id)
BG315198   .b 3118 to 3315 1 to 198       198/198
(100 %)
0 diff
(100 %id)
CD672976 eye, Iris .b 3145 to 3784 1 to 640       640/640
(100 %)
0 diff
(100 %id)
BM765479 stomach .b 3149 to 3769 1 to 622       622/622
(100 %)
1 diff
(99.9 %id)
DA615081   .b 3154 to 3750 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
TI_57170645   .b 3165 to 3973 28 to 843       816/876
(93 %)
13 diff
(98.6 %id)
BI825598 brain, medulla .b 3168 to 3973 1 to 813       813/846
(96 %)
8 diff
(99.1 %id)
NM_001162383.1   .c 1 to 4182 1 to 4182 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 4182/4182
(100 %)
0 diff
(100 %id)
U72206   .c 17 to 3654 1 to 3633   tiling clone,   3582/3633
(98 %)
67 diff
(98.2 %id)
BC020567 Brain, anaplastic oligodendroglioma with1p/19q loss .c 19 to 4127 1 to 4110   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 4110/4110
(100 %)
1 diff
(100.0 %id)
BQ439529 embryonal carcinoma, cell line, testis .c 25 to 769 1 to 753       753/876
(85 %)
15 diff
(98.3 %id)
BM476546 lymph, lymphoma, cell line .c 27 to 1015 13 to 1010       998/1022
(97 %)
33 diff
(96.8 %id)
CN388795 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 73 to 733 1 to 662       662/662
(100 %)
1 diff
(99.9 %id)
BT007407   .c 200 to 3078 1 to 2879       2879/2880
(99 %)
1 diff
(100.0 %id)
CV023498 mixed .c 200 to 837 1 to 640       640/640
(100 %)
6 diff
(99.1 %id)
TI_1948081831   .c 200 to 981 129 to 915       787/1151
(68 %)
26 diff
(97.8 %id)
TI_1948081832   .c 200 to 1093 135 to 1035       901/1340
(67 %)
35 diff
(97.4 %id)
TI_1948082049   .c 200 to 1080 128 to 1010       883/1129
(78 %)
50 diff
(95.6 %id)
TI_1948082050   .c 200 to 1035 130 to 977       848/1402
(60 %)
37 diff
(97.4 %id)
TI_1948082255   .c 200 to 997 130 to 926       797/1114
(71 %)
24 diff
(97.9 %id)
TI_1948082256   .c 200 to 1088 130 to 1027       898/1376
(65 %)
47 diff
(96.6 %id)
TI_1948082490   .c 200 to 964 123 to 884       762/1084
(70 %)
18 diff
(98.4 %id)
BQ424198 melanotic melanoma, skin .c 471 to 1264 1 to 803       803/898
(89 %)
17 diff
(98.2 %id)
BF893375 marrow .c 522 to 886 14 to 378       365/378
(96 %)
6 diff
(98.5 %id)
BF893219 marrow .c 544 to 961 24 to 441       418/441
(94 %)
7 diff
(98.5 %id)
BF893427 marrow .c 583 to 919 31 to 369       341/369
(92 %)
19 diff
(94.9 %id)
CN388799 embryonic stem cells, DMSO-treated H9 cellline .c 593 to 1100 1 to 508       508/508
(100 %)
2 diff
(99.7 %id)
BF817961 colon_ins .c 671 to 876 213 to 8     Submitted on the opposite strand 206/229
(89 %)
4 diff
(98.3 %id)
BE871637 adenocarcinoma, colon .c 695 to 1310 1 to 617       617/617
(100 %)
3 diff
(99.6 %id)
NM_004723.3   .d 1 to 4107 1 to 4107 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 4107/4107
(100 %)
0 diff
(100 %id)
BI597862 brain, hypothalamus .d 5 to 720 1 to 717   tiling clone,   717/742
(96 %)
18 diff
(97.6 %id)
DB497067 hypothalamus .d 10 to 496 1 to 486       486/486
(100 %)
7 diff
(98.6 %id)
TI_45210902   .d 10 to 720 86 to 797       712/822
(86 %)
18 diff
(97.9 %id)
AL512715 brain .d 16 to 4091 1 to 4076 exact tiling clone, available from DKFZ, AAA   4076/4076
(100 %)
1 diff
(100.0 %id)
CN388796 embryonic stem cells, DMSO-treated H9 cellline .e 1 to 826 1 to 826   tiling clone,   826/826
(100 %)
5 diff
(99.4 %id)
BG437734 large cell carcinoma, lung .e 807 to 1629 1 to 833   tiling clone,   833/892
(93 %)
46 diff
(94.9 %id)
BQ061672 lymph, lymphoma, cell line .e 1087 to 1904 10 to 830   tiling clone,   828/1073
(77 %)
23 diff
(97.9 %id)
BM552445 leiomyosarcoma, uterus .e 1837 to 2750 1 to 922   tiling clone,   922/982
(93 %)
15 diff
(98.5 %id)
BI757128 brain .f 1 to 807 1 to 814   tiling clone,   814/816
(99 %)
13 diff
(98.5 %id)
TI_57221677   .f 1 to 807 65 to 878       814/880
(92 %)
19 diff
(97.9 %id)
BX414854 thymus .f 539 to 1530 1 to 980   tiling clone,   984/1002
(98 %)
28 diff
(97.3 %id)
CR992229 T-Lymphocytes .f 1221 to 1846 1 to 627   tiling clone,   627/629
(99 %)
2 diff
(99.7 %id)
CN388792 embryonic stem cells, cell lines H1, H7, andH9 .f 1245 to 1903 1 to 658       658/658
(100 %)
5 diff
(99.3 %id)
R11910 whole brain .f 1370 to 1749 1 to 374       374/416
(89 %)
16 diff
(96.2 %id)
AL832538 brain .f 1547 to 2940 1 to 1394   tiling clone, available from DKFZ, AAA   1394/1394
(100 %)
2 diff
(99.9 %id)
BM545150 ovary (pool of 3) .f 1549 to 2307 21 to 782   tiling clone,   762/1174
(64 %)
27 diff
(97.8 %id)
AA355834   .f 1566 to 1845 1 to 280       280/286
(97 %)
4 diff
(98.7 %id)
R39102 whole brain .f 2543 to 2940 416 to 15   tiling clone, AAA   402/406
(99 %)
4 diff
(99.1 %id)
BI114701 muscle, rhabdomyosarcoma .g 1 to 860 1 to 848 R181G A182H L183C L184W E185S ... tiling clone,   848/991
(85 %)
61 diff
(93.9 %id)
DC420566 uterus .h 1 to 571 1 to 571   tiling clone,   571/571
(100 %)
0 diff
(100 %id)
CN481908 eye .h 430 to 1052 1 to 623   tiling clone,   623/623
(100 %)
0 diff
(100 %id)
DB473744 hippocampus .i 1 to 461 1 to 461   tiling clone,   461/461
(100 %)
2 diff
(99.6 %id)
TI_57202679   .i 85 to 858 34 to 815 S2D G3V N4A R5T R6W ...     782/826
(94 %)
16 diff
(98.1 %id)
BI823500 pooled brain, lung, testis .i 86 to 858 1 to 781 S2D G3V N4A R5T R6W ... tiling clone,   781/792
(98 %)
14 diff
(98.3 %id)
DN990380 brain, whole brain .i 96 to 693 11 to 608   tiling clone,   598/608
(98 %)
6 diff
(99.1 %id)
BM146462 leukopheresis .j 1 to 539 1 to 539   tiling clone,   539/539
(100 %)
7 diff
(98.8 %id)
CB992719 placenta, pre-eclamptic placenta .j 8 to 771 28 to 798 L199P Q200A Q201A H202A K203X ... tiling clone,   771/813
(94 %)
18 diff
(97.8 %id)
DA344419 substantia nigra .k 1 to 576 2 to 577   tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
AA320695 adipose tissue, white .k 163 to 468 1 to 306       306/306
(100 %)
2 diff
(99.4 %id)
AW068077 Bone, Hip .k 180 to 395 9 to 224       216/224
(96 %)
6 diff
(97.4 %id)
BU170796 eye, retinoblastoma .k 191 to 1038 1 to 850 A167T F198P K203* tiling clone,   850/893
(95 %)
14 diff
(98.5 %id)
BM925107 pooled lung and spleen .l 1 to 669 81 to 749 exact tiling clone,   669/1241
(53 %)
9 diff
(99.3 %id)
CN264153 embryonic stem cells, cell lines H1, H7, andH9 .m-u 1 to 545 11 to 555 exact tiling clone,   545/555
(98 %)
6 diff
(99.0 %id)
DB135454 thymus .m-u 20 to 456 2 to 438   tiling clone, capped   437/437
(100 %)
0 diff
(100 %id)
BI007348 kidney_tumor .n 1 to 426 41 to 466 S2A V25G tiling clone,   426/466
(91 %)
7 diff
(98.5 %id)
BQ045077 Knee, Osteoarthritic Cartilage .o-u 1 to 812 806 to 1 S118F tiling clone,   806/806
(100 %)
12 diff
(98.6 %id)
BQ433030 large cell carcinoma, lung .o-u 438 to 1291 1 to 869   tiling clone,   869/885
(98 %)
21 diff
(97.7 %id)
BF304567 muscle, rhabdomyosarcoma .o-u 1082 to 1642 1 to 557   tiling clone,   557/1108
(50 %)
16 diff
(98.6 %id)
BF307553 muscle, rhabdomyosarcoma .o-u 1082 to 1792 1 to 712   tiling clone,   712/984
(72 %)
58 diff
(94.2 %id)
BE298111 muscle, rhabdomyosarcoma .o-u 1102 to 1607 1 to 501   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 501/501
(100 %)
8 diff
(98.5 %id)
BP283711 bone marrow .p 1 to 581 1 to 581 exact tiling clone,   581/581
(100 %)
0 diff
(100 %id)
AW580745 leiomios .q-u 1 to 632 630 to 1 exact tiling clone,   630/630
(100 %)
5 diff
(99.3 %id)
AW937327 denis_drash .r 1 to 543 584 to 43 N2M K10* tiling clone, Submitted on the opposite strand 542/591
(91 %)
9 diff
(98.5 %id)
DB444152 testis .s 1 to 437 1 to 438   tiling clone,   438/438
(100 %)
7 diff
(98.5 %id)
DB445291 testis .s 1 to 432 1 to 433       433/436
(99 %)
7 diff
(98.4 %id)
DB453861 testis .s 2 to 492 1 to 491 exact tiling clone,   493/493
(100 %)
2 diff
(99.6 %id)
BP212664 cerebrum .t 1 to 575 1 to 577 L31S tiling clone,   577/577
(100 %)
2 diff
(99.7 %id)
AW450248   .u 1 to 428 445 to 18 exact tiling clone, AAA   428/438
(97 %)
0 diff
(100 %id)
AI829117 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .u 34 to 429 398 to 2   tiling clone,   397/398
(99 %)
0 diff
(100 %id)
BF926426 nervous_tumor .va 1 to 416 1 to 417   tiling clone,   417/417
(100 %)
3 diff
(99.3 %id)
AW845774 colon .va 248 to 594 29 to 379   tiling clone,   351/379
(92 %)
8 diff
(97.9 %id)
BI036621 nervous_tumor .va 261 to 484 1 to 225       225/226
(99 %)
5 diff
(97.8 %id)
AK127366 substantia nigra .va 502 to 2677 1 to 2176 exact tiling clone, available from FLJ,   2176/2176
(100 %)
1 diff
(100.0 %id)
DA346194 substantia nigra .va 503 to 1084 2 to 583 exact capped   582/582
(100 %)
0 diff
(100 %id)
CV428439 marrow .va 1856 to 2023 1 to 169       169/169
(100 %)
8 diff
(95.3 %id)
AV734688 pheochromocytoma .va 2103 to 2525 1 to 416       416/423
(98 %)
16 diff
(96.3 %id)
AW299534 Kidney .va 2132 to 2678 547 to 1       547/547
(100 %)
0 diff
(100 %id)
AW299896 Kidney .va 2139 to 2678 540 to 1       540/540
(100 %)
1 diff
(99.9 %id)
AA504765.
matches multiple genes
germinal center B cell .va 2154 to 2547 1 to 393     also hits gene TRA2A 393/393
(100 %)
4 diff
(99.0 %id)
BF807632 colon_ins .va 2171 to 2633 469 to 5     Submitted on the opposite strand 465/469
(99 %)
0 diff
(100 %id)
AA505099.
matches multiple genes
germinal center B cell .va 2280 to 2665 386 to 1     also hits gene FOXN3 386/386
(100 %)
0 diff
(100 %id)
AA505100.
matches multiple genes
germinal center B cell .va 2290 to 2689 400 to 1     also hits gene SLC35B4 400/400
(100 %)
2 diff
(99.5 %id)
BM717720 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .va 2295 to 2704 1 to 409   tiling clone,   409/412
(99 %)
3 diff
(99.3 %id)
AA584753 pheochromocytoma .va 2303 to 2650 348 to 1       348/348
(100 %)
0 diff
(100 %id)
AA768306 germinal center B cell .va 2311 to 2619 397 to 88       310/397
(78 %)
0 diff
(100 %id)
AW136415   .va 2315 to 2694 380 to 1   tiling clone,   380/390
(97 %)
1 diff
(99.8 %id)
AV739401 cord Blood .va 2331 to 2675 37 to 363   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 327/365
(89 %)
7 diff
(98.1 %id)
BG150054 carcinoid, lung .va 2332 to 2682 351 to 1       351/351
(100 %)
0 diff
(100 %id)
BG060019 brain, glioblastoma without EGFR amplification .va 2482 to 2678 197 to 1       197/197
(100 %)
0 diff
(100 %id)
BQ346601 nervous_tumor .va 2505 to 2693 6 to 189       184/189
(97 %)
6 diff
(96.9 %id)
AW377082 colon .vb-u 160 to 761 14 to 615   tiling clone,   602/615
(97 %)
6 diff
(99.1 %id)
AW850565 colon .vb-u 168 to 735 1 to 568       568/568
(100 %)
2 diff
(99.7 %id)
AW377026 colon .vb-u 256 to 865 609 to 1   tiling clone,   609/609
(100 %)
3 diff
(99.6 %id)
AW377067 colon .vb-u 267 to 614 1 to 347       347/347
(100 %)
10 diff
(97.2 %id)
AW604240 colon .vb-u 305 to 861 557 to 1   tiling clone,   557/557
(100 %)
4 diff
(99.3 %id)
BI006570 kidney_tumor .vb-u 614 to 1001 1 to 391   tiling clone,   391/406
(96 %)
27 diff
(93.4 %id)
W25497 lung .vc 1 to 401 1 to 403 A6X G8X L9F Q10A W11V ... tiling clone, fully sequenced,   403/403
(100 %)
4 diff
(99.1 %id)
BX095254 lung .vc 2 to 282 1 to 281 exact tiling clone,   281/281
(100 %)
0 diff
(100 %id)
BQ327282 colon_normal .vc 48 to 396 22 to 369       348/369
(94 %)
11 diff
(97.1 %id)
AI420010 pooled .vc 269 to 693 425 to 1   tiling clone,   425/425
(100 %)
0 diff
(100 %id)
N93630 lung .vc 371 to 694 331 to 1   tiling clone, fully sequenced,   331/331
(100 %)
1 diff
(99.7 %id)
AA300188 uterus .vd 1 to 377 1 to 380 H13X C41L S43K K44* tiling clone,   380/380
(100 %)
3 diff
(99.3 %id)
AW954149   .vd 2 to 694 1 to 697 exact tiling clone,   697/699
(99 %)
9 diff
(98.8 %id)
CB267719 adipose .ve-u 1 to 564 1 to 561 exact tiling clone,   561/562
(99 %)
6 diff
(99.0 %id)
CB269242 adipose .ve-u 2 to 494 1 to 493 exact tiling clone,   493/493
(100 %)
2 diff
(99.6 %id)
BI026478 marrow .vf-u 1 to 173 182 to 11 G27A Q28K G30V A31L E32R ... tiling clone,   172/182
(94 %)
0 diff
(100 %id)
AK295924 substantia nigra Gene ARHGEF2, variant not shown         Suspected internal deletion, this clone was ignored    
AK304548 uterus Gene ARHGEF2, variant not shown         Suspected internal deletion, this clone was ignored    
AW862915 stomach_normal Gene ARHGEF2, variant not shown              
BF988429 placenta_normal Gene ARHGEF2, variant not shown         Suspected internal deletion, suspected internal deletion, suspected internal deletion, this clone was ignored    
BQ338921 nervous_normal Gene ARHGEF2, variant not shown         This clone was ignored    
AI817951 anaplastic oligodendroglioma, brain Gene ARHGEF2, variant not shown         Suspected internal deletion, this clone was ignored    
AW103563 brain, tumor, 5 pooled (see description) Gene ARHGEF2, variant not shown         Suspected internal deletion, this clone was ignored    
BC000265 Eye, retinoblastoma Gene ARHGEF2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DA932294 Spleen Gene ARHGEF2, variant not shown       capped This clone was ignored    
DB332571 Spleen Gene ARHGEF2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n, .o-u, .p, .q-u, .r, .s, .t, .u, .va, .vb-u, .vc, .vd, .ve-u, .vf-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI