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Gene ARHGEF16TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
127 supporting clones for gene ARHGEF16 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ218186 epithelioid carcinoma, Pancreas .a 1 to 661 1 to 671   tiling clone,   671/1024
(65 %)
13 diff
(98.8 %id)
DB499586 hypothalamus .a 147 to 625 1 to 477       477/477
(100 %)
7 diff
(98.6 %id)
CB988090 Human Placenta, placenta .a 154 to 872 25 to 751       727/850
(85 %)
23 diff
(97.3 %id)
NM_014448.3   .a 158 to 3059 1 to 2904 exact RefSeq, AAA   2904/2904
(100 %)
3 diff
(99.9 %id)
CR609468 HeLa cells Cot 25-normalized .a 168 to 3025 1 to 2858 exact tiling clone,   2858/2858
(100 %)
0 diff
(100 %id)
BX384088   .a 169 to 1158 1 to 980       980/993
(98 %)
33 diff
(96.7 %id)
CT000303 T-Lymphocytes .a 179 to 741 1 to 563       563/564
(99 %)
1 diff
(99.9 %id)
DA127520 cerebellum .a 241 to 796 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA634059 Kidney .a 241 to 779 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
AK095984 lung .a 251 to 3059 1 to 2811 H370Y C438R available from FLJ,   2811/2811
(100 %)
9 diff
(99.7 %id)
DA583712 lung .a 252 to 754 2 to 504   capped   503/503
(100 %)
0 diff
(100 %id)
DA708612   .a 252 to 779 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DR156592 human embryonic stem cells differentiated toan early endodermal cell type .a 256 to 898 1 to 643       643/643
(100 %)
0 diff
(100 %id)
DB215261 trachea .a 282 to 830 2 to 551   capped   550/550
(100 %)
3 diff
(99.5 %id)
BE619024 large cell carcinoma, lung .a 297 to 710 1 to 415       415/415
(100 %)
1 diff
(99.8 %id)
BE737291 adenocarcinoma, Pancreas .a 384 to 1001 124 to 743       620/1273
(48 %)
14 diff
(99.0 %id)
DA449526 tongue, tumor tissue .a 537 to 1046 2 to 511   capped   510/510
(100 %)
3 diff
(99.5 %id)
DN996694 breast cancer, Mammary gland (cancer tissue) .a 638 to 1138 1 to 501       501/501
(100 %)
6 diff
(98.9 %id)
BG676998 skin, squamous cell carcinoma .a 640 to 1461 1 to 826       826/828
(99 %)
16 diff
(98.1 %id)
AW856517 colon .a 675 to 972 9 to 306       298/312
(95 %)
2 diff
(99.4 %id)
BX370363   .a 758 to 1691 1 to 936       936/936
(100 %)
13 diff
(98.7 %id)
BG248679 adenocarcinoma cell line, colon .a 818 to 1585 1 to 760       760/902
(84 %)
18 diff
(98.1 %id)
AW842696 colon_normal .a 859 to 1175 330 to 14       317/344
(92 %)
6 diff
(98.3 %id)
BC002681 Uterus, endometrium adenocarcinoma .a 879 to 3059 9 to 2191   available from MGC, AAA   2183/2183
(100 %)
8 diff
(99.7 %id)
AA528712 alveolar rhabdomyosarcoma .a 888 to 1161 273 to 1       273/280
(97 %)
1 diff
(99.7 %id)
BE391191 endometrium, adenocarcinoma cell line, uterus .a 898 to 1557 1 to 660       660/767
(86 %)
11 diff
(98.6 %id)
DA539376 Kidney .a 972 to 1552 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
BM742306 stomach .a 990 to 1601 1 to 613       613/613
(100 %)
3 diff
(99.6 %id)
BM742773 stomach .a 990 to 1626 1 to 637       637/637
(100 %)
2 diff
(99.7 %id)
BM743850 stomach .a 990 to 1403 1 to 416       416/416
(100 %)
5 diff
(98.8 %id)
BM753654 stomach .a 990 to 1530 1 to 542       542/542
(100 %)
10 diff
(98.2 %id)
BM784124 stomach .a 990 to 1591 1 to 602       602/602
(100 %)
2 diff
(99.7 %id)
BM784253 stomach .a 990 to 1591 1 to 602       602/602
(100 %)
2 diff
(99.7 %id)
BM783654 stomach .a 990 to 1603 1 to 613       613/613
(100 %)
3 diff
(99.6 %id)
BM758474 Ascites, stomach .a 990 to 1591 1 to 602       602/602
(100 %)
2 diff
(99.7 %id)
BM743014 stomach .a 991 to 1677 1 to 686       686/686
(100 %)
3 diff
(99.6 %id)
TI_1948211958   .a 1269 to 1847 129 to 707   fully sequenced, AAA   579/707
(81 %)
6 diff
(99.2 %id)
BT007270   .a 1270 to 2535 1 to 1266       1266/1266
(100 %)
3 diff
(99.8 %id)
BE281075 choriocarcinoma, placenta .a 1323 to 1954 27 to 658       632/658
(96 %)
9 diff
(98.7 %id)
AA340058 epithelium, skin .a 1408 to 1700 1 to 292       292/292
(100 %)
3 diff
(99.0 %id)
BX479263   .a 1483 to 1829 1 to 347       347/347
(100 %)
1 diff
(99.8 %id)
DA917266 small intestine .a 1492 to 2011 55 to 574   capped   520/573
(90 %)
8 diff
(98.7 %id)
BM790507 Ascites, stomach .a 1517 to 2131 1 to 615       615/615
(100 %)
2 diff
(99.7 %id)
CN305626 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1599 to 2120 1 to 523       523/523
(100 %)
3 diff
(99.5 %id)
BX350450   .a 1634 to 2473 844 to 5       840/845
(99 %)
4 diff
(99.6 %id)
BX348350 Placenta Cot 25-normalized .a 1718 to 2396 1 to 682       682/991
(68 %)
36 diff
(96.4 %id)
BX348349 Placenta Cot 25-normalized .a 1724 to 2621 1 to 893       893/906
(98 %)
32 diff
(96.5 %id)
BM727250 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1762 to 2405 1 to 644       644/644
(100 %)
1 diff
(99.9 %id)
TI_1948211959   .a 1817 to 2537 841 to 120   fully sequenced,   722/841
(85 %)
2 diff
(99.8 %id)
CF457324 peripheral nervous system .a 1843 to 2589 23 to 769       747/769
(97 %)
10 diff
(98.7 %id)
BG537735 lung .a 1875 to 2352 1 to 478       478/478
(100 %)
7 diff
(98.6 %id)
BE515190 endometrium, adenocarcinoma cell line, uterus .a 1907 to 2814 1 to 902       902/1027
(87 %)
39 diff
(96.3 %id)
BM791150 stomach .a 1954 to 2565 1 to 612       612/612
(100 %)
1 diff
(99.9 %id)
AA143635 Pancreas .a 1971 to 2425 1 to 454       454/457
(99 %)
9 diff
(98.1 %id)
BM049515 carcinoma, cell line, Prostate .a 1994 to 2823 1 to 837       837/846
(98 %)
22 diff
(97.4 %id)
BM558044 astrocytoma grade IV, cell line, brain .a 1995 to 2598 25 to 633       609/1228
(49 %)
21 diff
(98.3 %id)
BG328764 adenocarcinoma cell line, colon .a 2029 to 2761 9 to 739       731/739
(98 %)
11 diff
(98.6 %id)
BI090122 cervix .a 2029 to 2672 9 to 682       650/964
(67 %)
42 diff
(95.7 %id)
BI091140 cervix .a 2029 to 2601 9 to 583       575/933
(61 %)
15 diff
(98.4 %id)
BM128044 Islets of Langerhans, Pancreas .a 2038 to 2532 1 to 495       495/495
(100 %)
2 diff
(99.6 %id)
BM854809 Ascites, stomach .a 2115 to 2469 119 to 473       355/473
(75 %)
6 diff
(98.8 %id)
BX362790   .a 2198 to 2993 822 to 33       790/975
(81 %)
13 diff
(98.7 %id)
AW373848 breast .a 2230 to 2736 509 to 3       507/519
(97 %)
1 diff
(99.9 %id)
TI_149298573   .a 2293 to 3056 861 to 87   AAA   775/814
(95 %)
35 diff
(95.8 %id)
AA877598 colon, colon tumor RER+ .a 2294 to 3059 763 to 1       763/794
(96 %)
33 diff
(95.9 %id)
TI_182940215   .a 2298 to 3065 843 to 84   AAA   760/976
(77 %)
14 diff
(98.6 %id)
BF002075 colon, colon tumor, RER+ .a 2332 to 3059 731 to 1       731/731
(100 %)
19 diff
(97.5 %id)
CN480782 Aveolar Macrophage, lung .a 2337 to 3065 744 to 19   AAA   726/729
(99 %)
9 diff
(98.8 %id)
BE619686 large cell carcinoma, lung .a 2345 to 2983 682 to 23       660/682
(96 %)
5 diff
(99.3 %id)
BF222883 pooled germ cell tumors .a 2374 to 3059 688 to 1       688/688
(100 %)
8 diff
(98.9 %id)
AW973546   .a 2395 to 3058 666 to 1     Submitted on the opposite strand 666/668
(99 %)
12 diff
(98.3 %id)
AW170406 cervix, tumor .a 2395 to 3059 680 to 12   AAA   669/715
(93 %)
34 diff
(95.3 %id)
BF002592 colon, colon tumor, RER+ .a 2417 to 3056 642 to 1       642/643
(99 %)
9 diff
(98.7 %id)
BU740803 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2457 to 3059 623 to 19   AAA   605/605
(100 %)
5 diff
(99.2 %id)
AW175639 breast .a 2472 to 2796 325 to 1       325/343
(94 %)
5 diff
(98.6 %id)
AA292511 ovarian tumor, ovary .a 2505 to 2804 1 to 298   fully sequenced,   298/298
(100 %)
9 diff
(97.0 %id)
AA481950 ovarian tumor, ovary .a 2505 to 2781 9 to 276   fully sequenced,   268/276
(97 %)
9 diff
(96.8 %id)
BX110986 ovarian tumor, ovary .a 2506 to 3059 1 to 557   AAA   557/557
(100 %)
7 diff
(98.8 %id)
AA857719 adenocarcinoma, colon .a 2522 to 3059 540 to 1       540/540
(100 %)
8 diff
(98.6 %id)
BI850940 pooled germ cell tumors .a 2526 to 3053 536 to 7       530/545
(97 %)
0 diff
(100 %id)
BU684697 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2556 to 3056 521 to 19   AAA   503/503
(100 %)
2 diff
(99.7 %id)
DB570713 hypothalamus .a 2582 to 3061 1 to 482     Submitted on the opposite strand 482/487
(98 %)
6 diff
(98.8 %id)
BE206463 adenocarcinoma cell line, ovary .a 2601 to 3063 469 to 4       466/469
(99 %)
0 diff
(100 %id)
AI739406 colon, colon tumor, RER+ .a 2614 to 3056 445 to 1       445/445
(100 %)
3 diff
(99.4 %id)
AI240397 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2623 to 3059 439 to 1       439/439
(100 %)
10 diff
(97.8 %id)
AA159160 Pancreas .a 2629 to 2948 1 to 331   fully sequenced,   331/331
(100 %)
10 diff
(97.0 %id)
AA593891 colon, colon tumor .a 2630 to 3059 432 to 1       432/432
(100 %)
3 diff
(99.4 %id)
AW139450   .a 2632 to 3059 447 to 18   AAA   430/430
(100 %)
3 diff
(99.4 %id)
AA146627 Pancreas .a 2636 to 3061 428 to 2       427/429
(99 %)
0 diff
(100 %id)
AA573308 breast .a 2682 to 3067 390 to 4   tiling clone,   387/390
(99 %)
0 diff
(100 %id)
AI767046 2 pooled tumors (clear cell type), Kidney .a 2703 to 3061 363 to 5       359/363
(98 %)
0 diff
(100 %id)
BG150575 pooled germ cell tumors .a 2710 to 3059 368 to 17   AAA   352/361
(97 %)
11 diff
(97.0 %id)
BG054584 dorsal root ganglia .a 2722 to 3061 346 to 5       342/346
(98 %)
0 diff
(100 %id)
AA482070 ovarian tumor, ovary .a 2751 to 3059 311 to 1   fully sequenced,   311/311
(100 %)
4 diff
(98.8 %id)
BM127778 Islets of Langerhans, Pancreas .a 2754 to 3059 325 to 18   AAA   308/308
(100 %)
4 diff
(98.8 %id)
EC442317 Prostate .a 2758 to 2854 1 to 96       96/96
(100 %)
5 diff
(94.8 %id)
AA235325 ovarian tumor, ovary .a 2774 to 3059 288 to 1   fully sequenced,   288/288
(100 %)
3 diff
(99.0 %id)
AI631819 Kidney .a 2797 to 3059 263 to 1       263/266
(98 %)
1 diff
(99.7 %id)
CB049550 Prostate .a 2797 to 3059 13 to 275   AAA   263/275
(95 %)
6 diff
(97.9 %id)
AA577044 colon, colon tumor RER+ .a 2821 to 3059 239 to 1       239/239
(100 %)
2 diff
(99.2 %id)
AI474419 Prostate .a 2827 to 3061 238 to 4       235/238
(98 %)
0 diff
(100 %id)
AI631436 pooled germ cell tumors .a 2827 to 3059 253 to 21   AAA   233/233
(100 %)
6 diff
(97.5 %id)
AW188610 colon, moderately differentiated adenocarcinoma .a 2875 to 3061 187 to 1       187/221
(84 %)
1 diff
(99.6 %id)
AI446285 adenocarcinoma, Pancreas .a 2879 to 3059 181 to 1       181/181
(100 %)
1 diff
(99.5 %id)
AA160776 Pancreas .a 2918 to 3061 157 to 1   fully sequenced,   157/157
(100 %)
1 diff
(99.4 %id)
AI581104 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 2973 to 3061 89 to 1       89/89
(100 %)
0 diff
(100 %id)
AI636909 pooled germ cell tumors .a 2978 to 3059 99 to 18   AAA   82/82
(100 %)
1 diff
(98.8 %id)
BE736460 adenocarcinoma, Pancreas .b 1 to 736 1 to 735   tiling clone,   735/1171
(62 %)
21 diff
(98.3 %id)
DB001065 breast, tumor tissue .b 53 to 595 2 to 545   tiling clone, capped   544/544
(100 %)
2 diff
(99.7 %id)
AL513948 placenta .b 692 to 1791 1 to 1084   tiling clone,   1084/1095
(98 %)
19 diff
(98.3 %id)
AK296150 thalamus .c 1 to 1504 1 to 1504 exact tiling clone,   1504/1504
(100 %)
3 diff
(99.9 %id)
DC340284 thalamus .c 1 to 576 1 to 576       576/576
(100 %)
0 diff
(100 %id)
D89016   .d 1 to 2217 1 to 2219 H82Y tiling clone,   2219/2219
(100 %)
13 diff
(99.5 %id)
BQ722782 sympathetic trunk .e 1 to 518 1 to 527   tiling clone,   525/805
(65 %)
31 diff
(96.2 %id)
DA451272 tongue, tumor tissue .e 132 to 686 2 to 556   tiling clone, capped   555/555
(100 %)
0 diff
(100 %id)
BM753714 stomach .e 138 to 717 1 to 582       582/582
(100 %)
14 diff
(97.6 %id)
BM752972 stomach .e 140 to 649 1 to 511       511/511
(100 %)
7 diff
(98.7 %id)
CV026234 mixed .e 419 to 1051 1 to 632   tiling clone,   632/632
(100 %)
2 diff
(99.7 %id)
AK310408 testis .f 1 to 1403 2 to 1404 exact tiling clone,   1404/1406
(99 %)
4 diff
(99.8 %id)
DB071802 testis .f 1 to 540 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DB016809 esophageal, tumor tissue .g 1 to 560 2 to 561 exact tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
BX398305 Placenta Cot 25-normalized .h 1 to 836 1 to 838 H13X S14X L15X S16X T31N ... tiling clone,   838/838
(100 %)
23 diff
(97.3 %id)
AK091910 Kidney .i 1 to 2337 2 to 2340   tiling clone, available from FLJ,   2340/2340
(100 %)
9 diff
(99.7 %id)
DA628263 Kidney .i 1 to 540 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
BM791829 stomach .i 1040 to 1571 1 to 533       533/537
(99 %)
4 diff
(99.3 %id)
BM795096 stomach .i 1040 to 1571 1 to 533       533/538
(99 %)
4 diff
(99.3 %id)
BM818554 stomach .i 1040 to 1616 1 to 578       578/578
(100 %)
4 diff
(99.4 %id)
DB320734 Kidney .i 1794 to 2337 547 to 1   tiling clone,   547/547
(100 %)
5 diff
(99.1 %id)
DA452628 tongue, tumor tissue .j 1 to 553 2 to 554 Q35R tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
BC051838 Peripheral Nervous System, sympathetictrunk Gene ARHGEF16, variant not shown       available from MGC, AAA This clone was ignored    
EL734728 mixed Gene ARHGEF16, variant not shown         This clone was ignored    
CN305625 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene ARHGEF16, variant not shown         This clone was ignored    
DW433846 Liver Gene ARHGEF16, variant not shown              
DB306187 brain Gene ARHGEF16, variant not shown              
DA247292 brain Gene ARHGEF16, variant not shown       capped      
AI492124 B-cell, chronic lymphotic leukemia Gene ARHGEF16, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI