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Gene ARHGAP22TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
132 supporting clones for gene ARHGAP22 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC126444 Lung, PCR rescued clones .a 1 to 2352 1 to 2352 exact tiling clone,   2352/2352
(100 %)
3 diff
(99.9 %id)
BC136319 Testicle, PCR rescued clones .a 1 to 2352 1 to 2352 exact     2352/2352
(100 %)
3 diff
(99.9 %id)
TI_1520874853   .a 1 to 778 66 to 849     Submitted on the opposite strand 784/849
(92 %)
23 diff
(97.3 %id)
TI_1520875179   .a 1 to 1137 64 to 1182     Submitted on the opposite strand 1046/1228
(85 %)
25 diff
(98.0 %id)
TI_1520877243   .a 476 to 1124 664 to 16       649/685
(94 %)
5 diff
(99.3 %id)
DC341823 thalamus .b 1 to 586 1 to 586   tiling clone,   586/593
(98 %)
1 diff
(99.9 %id)
DC391765 Spleen .b 101 to 659 1 to 560       560/560
(100 %)
1 diff
(99.9 %id)
DC428098   .b 109 to 692 1 to 584   tiling clone,   584/585
(99 %)
2 diff
(99.7 %id)
DC393765 esophageal, tumor tissue .b 115 to 668 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
DC415226 trachea .b 115 to 659 1 to 545       545/545
(100 %)
0 diff
(100 %id)
AK293579 cerebellum .b 215 to 2595 1 to 2381 exact tiling clone,   2381/2381
(100 %)
4 diff
(99.9 %id)
DC304013 cerebellum .b 215 to 768 1 to 554       554/554
(100 %)
1 diff
(99.9 %id)
DA289799 hippocampus .b 669 to 1182 15 to 528   capped   516/527
(97 %)
7 diff
(98.7 %id)
BX390118 Neuroblastoma Cot 10-normalized .b 795 to 1676 1 to 881       885/881
(100 %)
24 diff
(97.3 %id)
BQ674450 epidermoid carcinoma, cell line, salivary gland .b 843 to 1465 5 to 629       625/1095
(57 %)
19 diff
(98.3 %id)
DA080080 cerebellum .b 850 to 1422 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA266782 caudate nucleus .b 915 to 1466 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
AJ706711 heart .b 929 to 1217 315 to 27     Submitted on the opposite strand 289/315
(91 %)
1 diff
(99.7 %id)
TI_2194628578   .b 1005 to 1647 722 to 80       643/838
(76 %)
13 diff
(98.5 %id)
BX349893 Neuroblastoma Cot 10-normalized .b 1097 to 2002 905 to 1       905/909
(99 %)
22 diff
(97.6 %id)
BF967338 brain, hypothalamus .c 1 to 667 1 to 668   tiling clone,   668/999
(66 %)
10 diff
(99.0 %id)
BI600204 brain, hypothalamus .c 1 to 671 1 to 670       670/861
(77 %)
8 diff
(99.1 %id)
BI601607 brain, hypothalamus .c 1 to 673 1 to 691   available from MGC,   691/1111
(62 %)
31 diff
(97.3 %id)
BI668333 brain, hypothalamus .c 1 to 779 1 to 779       779/780
(99 %)
10 diff
(98.8 %id)
TI_45211395   .c 2 to 671 124 to 792       669/983
(68 %)
11 diff
(98.9 %id)
TI_45216275   .c 2 to 575 118 to 704       587/1227
(47 %)
16 diff
(98.7 %id)
TI_44346300   .c 2 to 779 88 to 865       778/866
(89 %)
13 diff
(98.5 %id)
BC047096 Brain, hypothalamus .c 6 to 2791 1 to 2786 P173H Q272* tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 2786/2786
(100 %)
8 diff
(99.8 %id)
DB486925 hypothalamus .c 9 to 671 1 to 663       663/704
(94 %)
6 diff
(99.2 %id)
DB491690 hypothalamus .c 9 to 747 1 to 739       739/739
(100 %)
1 diff
(99.9 %id)
DB495653 hypothalamus .c 9 to 509 1 to 501       501/501
(100 %)
0 diff
(100 %id)
DB501912 hypothalamus .c 9 to 484 1 to 476       476/476
(100 %)
0 diff
(100 %id)
BG707646 brain, hypothalamus .c 15 to 747 1 to 733       733/733
(100 %)
8 diff
(99.0 %id)
CR600275 Neuroblastoma Cot 10-normalized .c 18 to 2762 1 to 2745 exact     2745/2745
(100 %)
0 diff
(100 %id)
AL519798 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 18 to 996 1 to 978       978/981
(99 %)
7 diff
(99.3 %id)
DB488849 hypothalamus .c 23 to 723 1 to 701       701/701
(100 %)
10 diff
(98.6 %id)
DB497521 hypothalamus .c 23 to 671 1 to 649       649/699
(92 %)
9 diff
(98.8 %id)
DB498634 hypothalamus .c 23 to 746 1 to 719       719/719
(100 %)
12 diff
(98.4 %id)
DB503891 hypothalamus .c 23 to 500 1 to 478       478/478
(100 %)
0 diff
(100 %id)
DB504246 hypothalamus .c 23 to 497 1 to 476       476/476
(100 %)
1 diff
(99.8 %id)
EF560749   .c 43 to 2509 10 to 2476 exact     2467/2476
(99 %)
9 diff
(99.7 %id)
AY324801   .c 44 to 2791 1 to 2748 exact tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 2748/2748
(100 %)
0 diff
(100 %id)
BQ890110 eye, normal pigmented retinal epithelium .c 44 to 945 1 to 908       908/908
(100 %)
14 diff
(98.5 %id)
NM_021226.2   .c 44 to 2791 1 to 2748 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 2748/2748
(100 %)
0 diff
(100 %id)
DR979815 placenta .c 106 to 227 124 to 4       121/128
(94 %)
0 diff
(100 %id)
CO250008 Chondrosarcoma Lung Metastasis cell lines, lung .c 155 to 791 37 to 671       635/863
(73 %)
14 diff
(98.4 %id)
AA304143 aorta .c 280 to 569 1 to 292       292/292
(100 %)
3 diff
(99.0 %id)
TI_1520875175   .c 1403 to 2488 1134 to 55     Submitted on the opposite strand 1080/1238
(87 %)
15 diff
(98.8 %id)
TI_1520874477   .c 1524 to 2488 1029 to 58     Submitted on the opposite strand 972/1038
(93 %)
25 diff
(97.6 %id)
AL519797 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .c 1664 to 2762 1084 to 1       1084/1099
(98 %)
28 diff
(97.5 %id)
TI_154110443   .c 1947 to 2791 888 to 56   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 833/950
(87 %)
16 diff
(98.4 %id)
TI_149287161   .c 1954 to 2791 919 to 89   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 831/1078
(77 %)
25 diff
(97.7 %id)
BQ668648 epidermoid carcinoma, cell line, salivary gland .c 2027 to 2779 1 to 759       759/929
(81 %)
16 diff
(98.3 %id)
CA448170 Chondrosarcoma, Left Pubic Bone .c 2040 to 2791 767 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 749/749
(100 %)
7 diff
(99.1 %id)
BU615884 Bone, Subchondral Bone .c 2041 to 2791 766 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 748/748
(100 %)
5 diff
(99.4 %id)
DR978626 brain .c 2057 to 2270 1 to 213   AAA Submitted on the opposite strand 213/213
(100 %)
5 diff
(97.7 %id)
DB569708 hypothalamus .c 2069 to 2791 1 to 722     Submitted on the opposite strand 722/722
(100 %)
4 diff
(99.5 %id)
DB728205 hypothalamus .c 2071 to 2791 1 to 721     Submitted on the opposite strand 721/721
(100 %)
21 diff
(97.1 %id)
DB556233 hypothalamus .c 2094 to 2791 1 to 698     Submitted on the opposite strand 698/698
(100 %)
6 diff
(99.2 %id)
DB558214 hypothalamus .c 2095 to 2791 1 to 697     Submitted on the opposite strand 697/697
(100 %)
4 diff
(99.5 %id)
AI561107 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .c 2129 to 2792 668 to 4       665/668
(99 %)
3 diff
(99.6 %id)
BM972527 lung .c 2186 to 2791 624 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 606/606
(100 %)
6 diff
(99.1 %id)
CA431226 cell lines, Enchondroma .c 2186 to 2791 624 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 606/606
(100 %)
4 diff
(99.4 %id)
BX283222 lung, small cell carcinoma .c 2194 to 2705 1 to 512       512/512
(100 %)
1 diff
(99.9 %id)
AK127586   .d 1 to 2339 2 to 2340 exact tiling clone, available from FLJ,   2340/2340
(100 %)
5 diff
(99.8 %id)
DA482669   .d 1 to 573 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DB314954   .d 1828 to 2339 512 to 1       512/512
(100 %)
3 diff
(99.5 %id)
AK055037 brain .e 1 to 2378 2 to 2379 R505Q tiling clone, available from FLJ,   2379/2379
(100 %)
3 diff
(99.9 %id)
DA197279 brain .e 1 to 723 2 to 724   capped   723/753
(96 %)
13 diff
(98.3 %id)
DB303719 brain .e 1867 to 2378 508 to 1       508/509
(99 %)
20 diff
(96.1 %id)
DA172614 amygdala .f 1 to 569 2 to 571   tiling clone, capped   570/570
(100 %)
4 diff
(99.3 %id)
U90908 brain .f 377 to 2215 1 to 1839   tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1839/1839
(100 %)
2 diff
(99.9 %id)
T77103 whole brain .f 378 to 590 2 to 207       206/207
(99 %)
6 diff
(97.2 %id)
DB045768 testis .g 1 to 502 2 to 504   tiling clone, capped   503/503
(100 %)
1 diff
(99.9 %id)
DB338179 testis .g 1462 to 1967 506 to 1   tiling clone,   506/507
(99 %)
2 diff
(99.7 %id)
AK055937   .h 1 to 2763 2 to 2764 exact tiling clone, available from FLJ,   2764/2764
(100 %)
2 diff
(100.0 %id)
DA665076   .h 1 to 252 2 to 254   capped   253/253
(100 %)
1 diff
(99.7 %id)
CR743895   .h 222 to 869 1 to 648       648/648
(100 %)
1 diff
(99.9 %id)
DN999568   .h 676 to 1314 1 to 639       639/639
(100 %)
9 diff
(98.6 %id)
DA972666 synovial membrane tissue from rheumatioidarthritis .h 850 to 1411 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
BQ674444 epidermoid carcinoma, cell line, salivary gland .h 1749 to 2636 1 to 899       899/942
(95 %)
35 diff
(96.3 %id)
BQ670288 epidermoid carcinoma, cell line, salivary gland .h 1764 to 2332 1 to 568       568/1044
(54 %)
27 diff
(97.5 %id)
BQ675124 epidermoid carcinoma, cell line, salivary gland .h 1764 to 2500 1 to 738       738/967
(76 %)
15 diff
(98.5 %id)
CX167297 human embryonic stem cells differentiated toan early endodermal cell type .h 1858 to 2650 1 to 792       792/792
(100 %)
1 diff
(99.9 %id)
DB322112   .h 2312 to 2763 452 to 1       452/456
(99 %)
0 diff
(100 %id)
BG056564 brain, glioblastoma with probably TP53 mutation andwithout EGFR amplification .h 2407 to 2697 291 to 1       291/307
(94 %)
2 diff
(99.4 %id)
BE796498 lung, small cell carcinoma .h 2707 to 3277 1 to 573   tiling clone,   573/573
(100 %)
3 diff
(99.5 %id)
TI_154194785   .h 2743 to 3288 50 to 594   tiling clone,   545/1009
(54 %)
5 diff
(99.6 %id)
CF128657 Chondrosarcoma Lung Metastasis cell lines, lung .h 2744 to 3285 1 to 541   tiling clone,   541/543
(99 %)
4 diff
(99.3 %id)
AW068397 Bone, Hip .h 2810 to 3257 455 to 8       448/455
(98 %)
0 diff
(100 %id)
DB573109 hypothalamus .h 2811 to 3284 1 to 474     Submitted on the opposite strand 474/474
(100 %)
2 diff
(99.6 %id)
DB575492 hypothalamus .h 2818 to 3284 1 to 467     Submitted on the opposite strand 467/467
(100 %)
2 diff
(99.6 %id)
DB566713 hypothalamus .h 2822 to 3284 1 to 463     Submitted on the opposite strand 463/463
(100 %)
1 diff
(99.8 %id)
DB728197 hypothalamus .h 2824 to 3284 1 to 461     Submitted on the opposite strand 461/461
(100 %)
4 diff
(99.2 %id)
AA937220 pooled .h 2841 to 3284 458 to 14   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 445/445
(100 %)
4 diff
(99.2 %id)
AI754850 bone marrow stroma .h 2860 to 3284 444 to 20   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 425/425
(100 %)
1 diff
(99.8 %id)
BF513016   .h 2867 to 3246 11 to 390     Submitted on the opposite strand 380/400
(95 %)
4 diff
(99.0 %id)
AI767482 Kidney .h 2936 to 3283 349 to 2       348/349
(99 %)
0 diff
(100 %id)
BG911505 anaplastic oligodendroglioma with 1p/19qloss, brain .h 2971 to 3284 1 to 314   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 314/314
(100 %)
0 diff
(100 %id)
AW262538 brain, three pooled meningiomas .h 3055 to 3279 224 to 1       224/224
(100 %)
5 diff
(97.8 %id)
AA304058 aorta .h 3102 to 3284 183 to 1     Submitted on the opposite strand 183/183
(100 %)
0 diff
(100 %id)
DA146934 amygdala .i 1 to 531 2 to 532 exact tiling clone, capped   531/531
(100 %)
1 diff
(99.9 %id)
BC043540 Brain, adult medulla .j 1 to 1963 1 to 1963 G114R W139R tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1963/1963
(100 %)
3 diff
(99.9 %id)
BI831739 brain, medulla .j 1 to 789 1 to 797 A5H C6A W7G G8E R9E ... available from MGC,   797/797
(100 %)
13 diff
(98.4 %id)
TI_57175662   .j 1 to 789 69 to 865 A5H C6A W7G G8E R9E ...     797/865
(92 %)
18 diff
(98.0 %id)
AA719380   .j 1528 to 1960 435 to 3       433/435
(99 %)
0 diff
(100 %id)
DB117120 thymus .k 1 to 550 3 to 552 exact tiling clone, capped   551/551
(100 %)
2 diff
(99.7 %id)
DB133790 thymus .k 1 to 544 3 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
AA781406   .l 1 to 520 524 to 5 R105H tiling clone,   520/524
(99 %)
0 diff
(100 %id)
BE830104 lung_tumor .l 130 to 614 1 to 486   tiling clone,   486/488
(99 %)
6 diff
(98.8 %id)
BE830107 lung_tumor .l 130 to 614 1 to 486       486/491
(98 %)
6 diff
(98.8 %id)
BE830159 lung_tumor .l 130 to 614 1 to 486       486/488
(99 %)
6 diff
(98.8 %id)
BE830162 lung_tumor .l 130 to 614 1 to 486       486/491
(98 %)
6 diff
(98.8 %id)
BU628585 Bone, Enchondroma cell line .m 1 to 717 735 to 19 P16X G64X tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 717/717
(100 %)
2 diff
(99.8 %id)
BQ720590 sympathetic trunk .n 1 to 912 1 to 913 exact tiling clone,   913/913
(100 %)
19 diff
(98.0 %id)
AV746858 Pituitary .n 547 to 804 1 to 249   tiling clone,   249/249
(100 %)
22 diff
(91.2 %id)
AK097151 Spleen .o-u 1 to 2330 2 to 2331 exact tiling clone, available from FLJ,   2331/2331
(100 %)
2 diff
(100.0 %id)
DA939903 Spleen .o-u 1 to 595 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
CV353055 bladder_tumor .o-u 1366 to 1580 218 to 4     Submitted on the opposite strand 215/221
(97 %)
0 diff
(100 %id)
BI024874 marrow .o-u 1371 to 1593 1 to 223       223/232
(96 %)
15 diff
(93.6 %id)
BI036257 nervous_tumor .o-u 1666 to 2053 389 to 2       388/389
(99 %)
0 diff
(100 %id)
AW513393 colon, juvenile granulosa tumor .o-u 1952 to 2333 382 to 1   tiling clone,   382/382
(100 %)
0 diff
(100 %id)
DB333098 Spleen .o-u 2058 to 2330 274 to 1       274/274
(100 %)
2 diff
(99.3 %id)
BQ722803 sympathetic trunk .p-u 1 to 737 15 to 760   tiling clone,   746/888
(84 %)
8 diff
(99.1 %id)
DA358002 subthalamic nucleus .p-u 426 to 979 2 to 555 E12A tiling clone, capped   554/554
(100 %)
2 diff
(99.7 %id)
CR735170 B-cells, primary B-cells from tonsils (cell line) .q 1 to 508 30 to 537   tiling clone,   508/537
(94 %)
6 diff
(98.9 %id)
BX283247 Kidney, renal cell adenocarcinoma .q 10 to 510 1 to 501       501/501
(100 %)
1 diff
(99.9 %id)
BG325672 Kidney, renal cell adenocarcinoma .q 10 to 700 1 to 690 exact tiling clone,   690/693
(99 %)
3 diff
(99.6 %id)
AU311631 neuroblastoma .r-u 1 to 587 1 to 585 G5R W6G P7R D8T G9L ... tiling clone,   585/585
(100 %)
3 diff
(99.5 %id)
AI079221 senescent fibroblast .s 1 to 432 437 to 5 D24G K25Q D26R E27* tiling clone,   433/437
(99 %)
2 diff
(99.6 %id)
AW450083   .s 179 to 432 269 to 16       254/269
(94 %)
0 diff
(100 %id)
R25018 whole brain Gene ARHGAP22, variant not shown         This clone was ignored    
R43776 whole brain Gene ARHGAP22, variant not shown         This clone was ignored    
BC037890 Brain, hippocampus Gene ARHGAP22, variant not shown       available from MGC, AAA This clone was ignored    
BI550967 brain, hippocampus Gene ARHGAP22, variant not shown       available from MGC, This clone was ignored    
BM907058 brain, hippocampus Gene ARHGAP22, variant not shown         This clone was ignored    
TI_44172039   Gene ARHGAP22, variant not shown         This clone was ignored    
CA421694 Bone, Enchondroma cell line Gene ARHGAP22, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u, .p-u, .q, .r-u, .s Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C