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Gene ARL15TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
68 supporting clones for gene ARL15 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP275337 Kidney .a 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
CV801865 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 13 to 579 1 to 567       567/730
(77 %)
1 diff
(99.9 %id)
BP257364 heart .a 14 to 579 1 to 566       566/585
(96 %)
2 diff
(99.7 %id)
AX772814   .a 21 to 586 1 to 566   AAA   566/573
(98 %)
5 diff
(99.2 %id)
CD687130 normal nasopharynx .a 23 to 491 42 to 510       469/510
(91 %)
6 diff
(98.9 %id)
BG532262 embryonal carcinoma, testis .a 23 to 798 1 to 772 H129X P130S Q131T L132V C133M ...     772/789
(97 %)
17 diff
(97.9 %id)
AK000058 colon .a 24 to 2509 1 to 2486 exact tiling clone, available from FLJ, AAA   2486/2486
(100 %)
1 diff
(100.0 %id)
AK290886   .a 24 to 922 1 to 900 E113G     900/900
(100 %)
3 diff
(99.7 %id)
BC026093 Testis, embryonal carcinoma .a 24 to 1969 5 to 1948 exact available from MGC, AAA   1944/1944
(100 %)
3 diff
(99.9 %id)
BP276740 Kidney .a 24 to 604 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
NM_019087.2   .a 24 to 2509 1 to 2486 exact RefSeq, AAA   2486/2486
(100 %)
0 diff
(100 %id)
DA043838 bladder .a 25 to 571 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
DA131015 alzheimer cortex .a 25 to 580 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA150197 amygdala .a 25 to 584 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA658264   .a 25 to 579 2 to 557   capped   556/562
(98 %)
4 diff
(99.3 %id)
AL702172 human skeletal muscle .a 29 to 557 1 to 533       533/533
(100 %)
5 diff
(99.1 %id)
DA821165 pericardium .a 34 to 592 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA188985 amygdala .a 38 to 583 8 to 553   capped   546/546
(100 %)
0 diff
(100 %id)
DB466145 hippocampus .a 39 to 442 1 to 404       404/404
(100 %)
0 diff
(100 %id)
BM927085 brain .a 41 to 579 1 to 540       540/1079
(50 %)
2 diff
(99.9 %id)
AL709896 human skeletal muscle .a 60 to 579 6 to 525       520/633
(82 %)
7 diff
(98.9 %id)
BE565179 bladder, carcinoma, cell line .a 60 to 579 1 to 520       520/732
(71 %)
10 diff
(98.7 %id)
BG436141 placenta .a 60 to 579 2 to 524       523/991
(52 %)
10 diff
(99.0 %id)
N31301 melanocyte .a 89 to 541 1 to 453       453/455
(99 %)
1 diff
(99.8 %id)
DN992395 brain, whole brain .a 94 to 856 8 to 770 exact     763/770
(99 %)
6 diff
(99.3 %id)
BE567572 bladder, carcinoma, cell line .a 107 to 576 1 to 474       474/768
(61 %)
12 diff
(98.5 %id)
CR457225   .a 118 to 728 1 to 611       611/615
(99 %)
1 diff
(99.9 %id)
EL735700 mixed .a 118 to 579 1 to 462       462/574
(80 %)
7 diff
(98.8 %id)
TI_1948220877   .a 118 to 457 138 to 477   fully sequenced,   340/368
(92 %)
6 diff
(98.4 %id)
TI_1948221046   .a 118 to 453 127 to 462   fully sequenced,   336/363
(92 %)
6 diff
(98.4 %id)
TI_1948221219   .a 118 to 504 131 to 517       387/415
(93 %)
6 diff
(98.6 %id)
TI_1948221383   .a 118 to 401 135 to 418   fully sequenced,   284/312
(91 %)
6 diff
(98.1 %id)
BG287925 bladder, transitional cell papilloma, cell line .a 161 to 579 131 to 552       426/942
(45 %)
7 diff
(99.3 %id)
BX281836 brain .a 166 to 587 82 to 503       422/503
(83 %)
6 diff
(98.9 %id)
BM928338 brain .a 166 to 1133 81 to 1066       986/1074
(91 %)
44 diff
(96.0 %id)
AW779903 Kidney .a 229 to 831 603 to 1       603/603
(100 %)
13 diff
(97.9 %id)
CB994377 placenta, pre-eclamptic placenta .a 238 to 1031 23 to 824       802/828
(96 %)
28 diff
(96.7 %id)
CB992334 placenta, pre-eclamptic placenta .a 238 to 798 23 to 582       560/621
(90 %)
15 diff
(97.6 %id)
CB991520 placenta, pre-eclamptic placenta .a 238 to 775 23 to 565       543/896
(60 %)
11 diff
(98.8 %id)
TI_1948221384   .a 340 to 731 517 to 126   fully sequenced,   392/517
(75 %)
0 diff
(100 %id)
TI_1948221047   .a 423 to 731 435 to 127   fully sequenced,   309/336
(91 %)
0 diff
(100 %id)
TI_1948220878   .a 427 to 731 432 to 128   fully sequenced,   305/332
(91 %)
0 diff
(100 %id)
BQ952025 leiomyosarcoma, uterus .a 899 to 1824 1 to 929       929/930
(99 %)
19 diff
(98.0 %id)
BF358723 lung_tumor .a 903 to 1142 255 to 13       243/269
(90 %)
0 diff
(100 %id)
BG698188 skin .a 1083 to 1743 1 to 681       681/1012
(67 %)
50 diff
(95.1 %id)
FN173231 breast carcinoma .a 1222 to 1294 1 to 73       73/73
(100 %)
3 diff
(95.9 %id)
BG496253 lung, mucoepidermoid carcinoma .a 1471 to 2079 1 to 622       622/629
(98 %)
13 diff
(98.0 %id)
N22913 melanocyte .a 1504 to 1865 367 to 1       367/372
(98 %)
6 diff
(98.4 %id)
FN082211 breast carcinoma .a 1590 to 1695 1 to 100       100/101
(99 %)
6 diff
(94.1 %id)
BI087240 cervix .a 1601 to 2280 1 to 711       711/780
(91 %)
49 diff
(93.8 %id)
BE177310 head_neck .a 1863 to 2053 202 to 13     Submitted on the opposite strand 190/202
(94 %)
0 diff
(100 %id)
BG460098   .a 1969 to 2494 540 to 1     Submitted on the opposite strand 540/545
(99 %)
24 diff
(95.6 %id)
AW974050   .a 2041 to 2522 482 to 1     Submitted on the opposite strand 482/492
(97 %)
4 diff
(99.2 %id)
BX094743 breast .a 2043 to 2523 1 to 481   AAA   481/481
(100 %)
1 diff
(99.8 %id)
AA557396 breast .a 2074 to 2525 455 to 4       452/455
(99 %)
0 diff
(100 %id)
AI350192 carcinoid, lung .a 2088 to 2508 421 to 1       421/421
(100 %)
2 diff
(99.6 %id)
AA604578 adrenal adenoma, adrenal gland .a 2115 to 2439 325 to 1       325/325
(100 %)
2 diff
(99.4 %id)
BF435889 pooled .a 2150 to 2512 369 to 7   tiling clone,   363/369
(98 %)
0 diff
(100 %id)
AI758190 Kidney .a 2173 to 2509 337 to 1       337/337
(100 %)
1 diff
(99.8 %id)
BF798513 colon_ins .a 2195 to 2608 8 to 422       415/424
(97 %)
12 diff
(97.2 %id)
CR738808   .a 2349 to 2900 1 to 554   tiling clone,   554/563
(98 %)
3 diff
(99.5 %id)
AA495750.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2391 to 2791 1 to 401     also hits gene VTI1A 401/401
(100 %)
0 diff
(100 %id)
FN070418 breast carcinoma .a 2470 to 2574 1 to 110       110/110
(100 %)
5 diff
(95.5 %id)
DB203173 trachea .b 1 to 585 2 to 587   tiling clone, capped   586/586
(100 %)
2 diff
(99.7 %id)
DA678067   .b 40 to 624 2 to 586   tiling clone, capped   585/585
(100 %)
6 diff
(99.0 %id)
AA024755 heart .b 162 to 511 1 to 358       358/366
(97 %)
10 diff
(97.3 %id)
AA024756 heart .b 637 to 1064 434 to 1   tiling clone,   434/438
(99 %)
7 diff
(98.5 %id)
BG547596 lung .c 1 to 532 3 to 537 exact tiling clone,   537/541
(99 %)
5 diff
(99.1 %id)
AK311482 brain .d -9 to 885 1 to 895 exact tiling clone,   895/895
(100 %)
1 diff
(99.9 %id)
DC377948 brain .d -9 to 469 1 to 480       480/546
(87 %)
2 diff
(99.7 %id)
BU860703 mixed (pool of 40 RNAs) .e 1 to 357 5 to 361 exact     361/939
(38 %)
12 diff
(98.8 %id)
DA153697 amygdala .e 1 to 350 2 to 351 exact tiling clone, capped   350/575
(60 %)
1 diff
(99.9 %id)
BG483621 lung Gene ARL15, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI