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Gene INMTandFAM188BandAQP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
479 representative clones for gene INMTandFAM188BandAQP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB006311 breast, tumor tissue .a 1 to 525 4 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DB037085 testis .a 1 to 574 4 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
AK026027   .a 1 to 1431 2 to 1432   tiling clone, available from FLJ, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1432/1447
(98 %)
2 diff
(99.9 %id)
NM_032222.2   .a 1 to 2731 2 to 2732 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2732/2732
(100 %)
0 diff
(100 %id)
DA199424 brain .a 1 to 584 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA394593 thalamus .a 1 to 597 2 to 598   capped   597/597
(100 %)
2 diff
(99.7 %id)
DA716560   .a 1 to 545 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA752848   .a 1 to 574 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA778409 brain .a 1 to 559 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA854338 placenta .a 1 to 594 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA868176 Prostate .a 1 to 539 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB022163 testis .a 1 to 549 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
DB210212 trachea .a 1 to 582 2 to 585   capped   584/584
(100 %)
6 diff
(99.0 %id)
BX337438 Placenta Cot 25-normalized .a 4 to 951 1 to 945       945/956
(98 %)
4 diff
(99.6 %id)
AF538962 brain .a 7 to 2731 1 to 2726 R246G T270X G483A N617K V618R ... tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2726/2726
(100 %)
7 diff
(99.8 %id)
BQ440188 leiomyosarcoma, uterus .a 7 to 893 1 to 908       908/908
(100 %)
32 diff
(96.5 %id)
TI_43963812   .a 10 to 809 92 to 896       805/896
(89 %)
27 diff
(97.0 %id)
CR747084 pooled colon, kidney, stomach .a 11 to 525 1 to 515       515/515
(100 %)
0 diff
(100 %id)
BI764168 pooled colon, kidney, stomach .a 11 to 891 1 to 876       876/876
(100 %)
12 diff
(98.7 %id)
TI_57148754   .a 11 to 891 29 to 904       876/904
(96 %)
16 diff
(98.3 %id)
BI520432 brain, medulla .a 14 to 809 1 to 801       801/801
(100 %)
21 diff
(97.4 %id)
BI559792 testis .a 15 to 664 1 to 650   available from MGC,   650/650
(100 %)
7 diff
(99.0 %id)
AL530405 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 17 to 1109 1 to 1087       1087/1105
(98 %)
15 diff
(98.7 %id)
BC043210 testis .a 20 to 2731 6 to 2718 D121G K181R P299L W301M D302G ... available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2713/2713
(100 %)
6 diff
(99.8 %id)
TI_44348052   .a 20 to 664 90 to 734       645/734
(87 %)
9 diff
(98.8 %id)
BC098569 Chondrosarcoma Lung Metastasis .a 53 to 2731 1 to 2679 T322M tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2679/2679
(100 %)
1 diff
(100.0 %id)
CO246973 Chondrosarcoma Lung Metastasis cell lines, lung .a 53 to 739 39 to 719       681/856
(79 %)
19 diff
(97.8 %id)
DA454349 tongue, tumor tissue .a 72 to 644 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
CN369894 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 82 to 854 1 to 773       773/773
(100 %)
2 diff
(99.8 %id)
CN369893 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 123 to 425 1 to 302       302/302
(100 %)
1 diff
(99.7 %id)
DB166449 thyroid gland .a 348 to 1074 2 to 728   capped   727/727
(100 %)
5 diff
(99.4 %id)
AL530249 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 363 to 1398 1 to 1026       1026/1054
(97 %)
26 diff
(97.6 %id)
BQ187995 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1692 to 2259 1 to 567   fully sequenced,   567/567
(100 %)
2 diff
(99.7 %id)
AL530404 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 1755 to 2700 952 to 9       944/955
(98 %)
9 diff
(99.1 %id)
BX337437 Placenta Cot 25-normalized .a 1761 to 2693 933 to 4       930/943
(98 %)
13 diff
(98.7 %id)
AL563687 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 1822 to 2668 881 to 33       849/881
(96 %)
13 diff
(98.6 %id)
BQ185178 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2198 to 2724 553 to 26   fully sequenced, AAA   528/535
(98 %)
0 diff
(100 %id)
DB382493 thyroid gland .a 2260 to 2732 474 to 1       474/474
(100 %)
14 diff
(97.1 %id)
BM725532 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2263 to 2731 1 to 469   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 469/469
(100 %)
0 diff
(100 %id)
BX112553 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2315 to 2731 432 to 15   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 418/418
(100 %)
1 diff
(99.8 %id)
AI559501 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2326 to 2732 409 to 3       407/409
(99 %)
0 diff
(100 %id)
AI363049 anaplastic oligodendroglioma, brain .a 2439 to 2732 300 to 7       294/300
(98 %)
0 diff
(100 %id)
AI539542 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2454 to 2731 298 to 21   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 278/278
(100 %)
8 diff
(97.2 %id)
AW661811 pooled .a 2454 to 2732 281 to 3       279/281
(99 %)
0 diff
(100 %id)
BQ447678 Knee, Osteoarthritic Cartilage .a 2583 to 2731 169 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 151/151
(100 %)
2 diff
(98.7 %id)
AK308762 amygdala .b 1 to 2876 2 to 2877 S489P R685Q tiling clone,   2877/2877
(100 %)
2 diff
(100.0 %id)
DA190466 amygdala .b 1 to 474 2 to 475   capped   474/474
(100 %)
0 diff
(100 %id)
DA908849   .b 938 to 1496 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BU160706 melanotic melanoma, skin .b 1528 to 2390 1 to 867   tiling clone,   867/868
(99 %)
8 diff
(99.1 %id)
BU153426 large cell carcinoma, lung .b 1627 to 2344 12 to 731       720/900
(80 %)
25 diff
(97.3 %id)
DC415924 trachea .b 2131 to 2618 1 to 488       488/488
(100 %)
0 diff
(100 %id)
TI_149299351   .b 2859 to 3587 797 to 77   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 721/790
(91 %)
22 diff
(97.3 %id)
BM975698 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 3137 to 3587 469 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 451/451
(100 %)
1 diff
(99.8 %id)
AK304075 trachea .c 1 to 1531 1 to 1536 exact tiling clone,   1536/1536
(100 %)
2 diff
(99.9 %id)
BE819200 breast_normal .c 624 to 823 201 to 2       200/201
(99 %)
0 diff
(100 %id)
DA386306 thalamus .c 646 to 1234 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
CD608314   .c 677 to 1495 823 to 10       814/823
(98 %)
11 diff
(98.7 %id)
CN419065 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 751 to 1388 1 to 638       638/638
(100 %)
0 diff
(100 %id)
DA538605 Kidney .c 780 to 1355 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA827197 pericardium .c 796 to 1360 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA651033   .c 802 to 1367 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA041788 bladder .c 805 to 1376 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BQ719069 sympathetic trunk .c 805 to 1413 1 to 610       610/890
(68 %)
3 diff
(99.7 %id)
CD608312   .c 851 to 1495 653 to 10   tiling clone,   644/653
(98 %)
2 diff
(99.7 %id)
CD608318   .c 1013 to 1495 494 to 10       485/494
(98 %)
3 diff
(99.4 %id)
CD608319   .c 1172 to 1483 320 to 15       306/322
(95 %)
0 diff
(100 %id)
CD608323   .c 1187 to 1484 305 to 10       296/305
(97 %)
0 diff
(100 %id)
CD608325   .c 1253 to 1483 247 to 15       233/247
(94 %)
0 diff
(100 %id)
CD608322   .c 1394 to 1483 103 to 13       91/103
(88 %)
0 diff
(100 %id)
AL524147 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .d 1 to 948 1 to 941   tiling clone,   941/941
(100 %)
16 diff
(98.3 %id)
AL562317 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .d 949 to 1898 947 to 1   tiling clone,   947/947
(100 %)
22 diff
(97.7 %id)
NM_198098.2   .e 1 to 2807 1 to 2807 exact RefSeq,   2807/2807
(100 %)
0 diff
(100 %id)
DA930966 small intestine .e 26 to 550 2 to 526   tiling clone, capped   525/525
(100 %)
0 diff
(100 %id)
DB250795 uterus .e 43 to 617 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BP341947 stomach mucosa .e 53 to 631 1 to 579       579/579
(100 %)
0 diff
(100 %id)
AK312656   .e 54 to 920 1 to 867 I29V     867/867
(100 %)
2 diff
(99.8 %id)
DA386830 thalamus .e 54 to 637 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA390314 thalamus .e 54 to 628 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BP211885 cerebrum .e 54 to 636 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP249899 hippocampus .e 54 to 640 1 to 587       587/587
(100 %)
0 diff
(100 %id)
BP259975 heart .e 54 to 635 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP274880 Kidney .e 54 to 634 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP275144 Kidney .e 54 to 634 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP275505 Kidney .e 54 to 632 1 to 579       579/579
(100 %)
0 diff
(100 %id)
BP275928 Kidney .e 54 to 633 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BP276679 Kidney .e 54 to 634 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP276864 Kidney .e 54 to 634 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA633659 Kidney .e 54 to 625 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BP341051 stomach mucosa .e 54 to 637 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BP341980 stomach mucosa .e 54 to 632 1 to 579       579/579
(100 %)
0 diff
(100 %id)
BP343819 stomach mucosa .e 54 to 634 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DB205437 trachea .e 54 to 618 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA043665 bladder .e 55 to 623 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA065221 cerebellum .e 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA080107 cerebellum .e 55 to 632 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA081177 cerebellum .e 55 to 624 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA081994 cerebellum .e 55 to 624 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA082298 cerebellum .e 55 to 627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA144396 amygdala .e 55 to 627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA150295 amygdala .e 55 to 623 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA154668 amygdala .e 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA170571 amygdala .e 55 to 632 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA209240 brain .e 55 to 627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA250168 caudate nucleus .e 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA268243 caudate nucleus .e 55 to 619 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA274268 corpus callosum .e 55 to 623 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA276371 corpus callosum .e 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA279074 corpus callosum .e 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA290006 hippocampus .e 55 to 633 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA298561 hippocampus .e 55 to 635 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA302023 hippocampus .e 55 to 626 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA306729 hippocampus .e 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA310258 hippocampus .e 55 to 633 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA386849 thalamus .e 55 to 641 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA388782 thalamus .e 55 to 647 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA389264 thalamus .e 55 to 630 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA390785 thalamus .e 55 to 631 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA390901 thalamus .e 55 to 652 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA390988 thalamus .e 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA392216 thalamus .e 55 to 649 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA393332 thalamus .e 55 to 631 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA394785 thalamus .e 55 to 647 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA394828 thalamus .e 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA395101 thalamus .e 55 to 627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA396422 thalamus .e 55 to 631 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA421368 cervix .e 55 to 636 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA432273 colon .e 55 to 626 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA541344 lung .e 55 to 633 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA561045 heart .e 55 to 621 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA562789 heart .e 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA564391 heart .e 55 to 621 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA564970 heart .e 55 to 621 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA585684 lung .e 55 to 656 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
DA595461 lung .e 55 to 624 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA626524 Kidney .e 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA630504 Kidney .e 55 to 629 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA630542 Kidney .e 55 to 643 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA631857 Kidney .e 55 to 641 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA631862 Kidney .e 55 to 644 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA632693 Kidney .e 55 to 633 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA634423 Kidney .e 55 to 619 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA634834 Kidney .e 55 to 639 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA635122 Kidney .e 55 to 619 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA635516 Kidney .e 55 to 624 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA635707 Kidney .e 55 to 640 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA636123 Kidney .e 55 to 641 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA636287 Kidney .e 55 to 643 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA636597 Kidney .e 55 to 643 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA636843 Kidney .e 55 to 637 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA652625   .e 55 to 649 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA655198   .e 55 to 629 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA655662   .e 55 to 627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA656302   .e 55 to 627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA659776   .e 55 to 631 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA660126   .e 55 to 625 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA762457 tongue .e 55 to 631 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA763360 tongue .e 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA764243 tongue .e 55 to 641 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA767715 tongue .e 55 to 626 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA873557 Prostate .e 55 to 628 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA919959 small intestine .e 55 to 619 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA926319 small intestine .e 55 to 630 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB017408 esophageal, tumor tissue .e 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB108357 thymus .e 55 to 630 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB121053 thymus .e 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB130035 thymus .e 55 to 621 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB130076 thymus .e 55 to 619 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB152388 thymus .e 55 to 655 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
DB152931 thymus .e 55 to 628 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB153617 thymus .e 55 to 652 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DB153742 thymus .e 55 to 637 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB155344 thymus .e 55 to 637 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB156099 thymus .e 55 to 630 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB156438 thymus .e 55 to 638 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB157056 thymus .e 55 to 640 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DB157887 thymus .e 55 to 627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB158759 thymus .e 55 to 652 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DB158869 thymus .e 55 to 652 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DB161106 thymus .e 55 to 652 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DB161450 thymus .e 55 to 628 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB162401 thymus .e 55 to 646 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DB164572 thymus .e 55 to 651 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DB164665 thymus .e 55 to 621 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB165142 thymus .e 55 to 644 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DB165631 thymus .e 55 to 624 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB180853 kidney, tumor tissue .e 55 to 623 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB182956 liver, tumor tissue .e 55 to 625 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB197816 trachea .e 55 to 643 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DB228605 trachea .e 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB245354 uterus, tumor tissue .e 55 to 627 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB253060 uterus .e 55 to 626 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB255535 uterus .e 55 to 633 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB258889 uterus .e 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB259383 uterus .e 55 to 641 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DB260928 uterus .e 55 to 622 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB273873 uterus .e 55 to 623 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA396179 thalamus .e 57 to 625 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA041814 bladder .e 58 to 640 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA293495 hippocampus .e 58 to 631 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA305181 hippocampus .e 58 to 643 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA660715   .e 58 to 622 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA392781 thalamus .e 59 to 652 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA764054 tongue .e 59 to 647 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DB106435 thymus .e 59 to 627 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
BP275777 Kidney .e 61 to 641 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA299015 hippocampus .e 62 to 636 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA583179 lung .e 62 to 657 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
BI837828 pooled pancreas and spleen .e 64 to 922 1 to 865 V224C L225T I226H Y227L D228R ...     865/865
(100 %)
9 diff
(99.0 %id)
AL518392 brain, neuroblastoma, neuroblastoma cells .e 65 to 1206 1 to 1130 exact     1130/1133
(99 %)
15 diff
(98.7 %id)
BQ897686 dorsal root ganglia .e 65 to 922 1 to 871 G215X D240X R241P V242R K243E ...     871/872
(99 %)
16 diff
(98.2 %id)
BQ881586 dorsal root ganglia .e 66 to 876 1 to 817       817/861
(94 %)
15 diff
(98.3 %id)
CV575086 cornea, eye .e 67 to 694 1 to 628       628/628
(100 %)
0 diff
(100 %id)
BQ717357 sympathetic trunk .e 68 to 958 1 to 915 A200R V201G I202D T203H H204T ...     913/918
(99 %)
31 diff
(96.7 %id)
BQ924567 sciatic nerve .e 68 to 937 1 to 883 W213L V214G P216A F217I I218S ...     881/885
(99 %)
26 diff
(97.1 %id)
AL548920 placenta, Placenta Cot 25-normalized .e 70 to 1106 1 to 1036 exact     1036/1036
(100 %)
3 diff
(99.8 %id)
DB268267 uterus .e 70 to 636 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
CD516308 White Matter .e 71 to 923 1 to 868 W213L V214G P216A F217I I218H ...     866/870
(99 %)
21 diff
(97.6 %id)
BX457138 thymus .e 73 to 871 1 to 799       799/799
(100 %)
0 diff
(100 %id)
AL518984 brain, neuroblastoma, neuroblastoma cells .e 73 to 848 1 to 776       776/776
(100 %)
0 diff
(100 %id)
M77829 bone marrow .e 73 to 1412 1 to 1340 exact tiling clone,   1340/1340
(100 %)
0 diff
(100 %id)
S73482   .e 73 to 1412 1 to 1340 A45V     1340/1340
(100 %)
3 diff
(99.8 %id)
EB385976 eye, optic nerve .e 74 to 755 1 to 682       682/682
(100 %)
0 diff
(100 %id)
BQ881076 dorsal root ganglia .e 79 to 958 1 to 895 W213L V214G P216A F217I I218H ...     893/901
(99 %)
12 diff
(98.7 %id)
CD608311   .e 82 to 835 1 to 753       753/753
(100 %)
12 diff
(98.5 %id)
AB451275   .e 111 to 919 1 to 809       809/810
(99 %)
1 diff
(99.9 %id)
AB451402   .e 111 to 917 1 to 807       807/807
(100 %)
0 diff
(100 %id)
DA767309 tongue .e 113 to 699 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
CN419057 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 134 to 747 1 to 614       614/614
(100 %)
0 diff
(100 %id)
BY799566 eye .e 153 to 784 1 to 632       632/632
(100 %)
0 diff
(100 %id)
U41518 retinal pigment epithelium .e 460 to 2807 1 to 2344   tiling clone,   2344/2344
(100 %)
12 diff
(99.5 %id)
DA542540 lung .e 571 to 1139 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CK430001 eye, lacrimal gland .e 627 to 1231 1 to 605       605/605
(100 %)
0 diff
(100 %id)
BU151529 dorsal root ganglia .e 681 to 1531 1 to 859       859/867
(99 %)
11 diff
(98.8 %id)
DB125118 thymus .e 748 to 1313 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
AW385199 head_neck .e 985 to 1249 272 to 7       266/272
(97 %)
0 diff
(100 %id)
BE162516 head_neck .e 985 to 1249 294 to 29     Submitted on the opposite strand 266/294
(90 %)
0 diff
(100 %id)
CV571640 cornea, eye .e 991 to 1563 1 to 573       573/573
(100 %)
0 diff
(100 %id)
BQ878791 dorsal root ganglia .e 1020 to 1921 1 to 906   tiling clone,   906/907
(99 %)
17 diff
(98.2 %id)
AW945404 lung_normal .e 1022 to 1441 424 to 4     Submitted on the opposite strand 421/424
(99 %)
0 diff
(100 %id)
DA140987 alzheimer cortex .e 1023 to 1632 2 to 611   capped   610/610
(100 %)
0 diff
(100 %id)
BM706415 eye, lens .e 1049 to 1582 1 to 534     Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 534/534
(100 %)
0 diff
(100 %id)
BM989919 lung, Lung Focal Fibrosis .e 1088 to 1699 1 to 611     Submitted on the opposite strand 611/611
(100 %)
6 diff
(99.1 %id)
AL518391 brain, neuroblastoma, neuroblastoma cells .e 1657 to 2794 1129 to 1       1129/1169
(96 %)
27 diff
(97.7 %id)
AL573408 placenta, Placenta Cot 25-normalized .e 1725 to 2772 1045 to 1   tiling clone,   1045/1048
(99 %)
3 diff
(99.8 %id)
BX457137 thymus .e 1905 to 2760 856 to 1       856/856
(100 %)
1 diff
(99.9 %id)
AL518983 brain, neuroblastoma, neuroblastoma cells .e 1943 to 2580 830 to 193       638/830
(76 %)
11 diff
(98.7 %id)
BM664279 eye, lens .e 2464 to 2807 362 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 344/344
(100 %)
0 diff
(100 %id)
AF128846   .f 1 to 2556 4 to 2562 M205V F254C tiling clone,   2562/2566
(99 %)
12 diff
(99.6 %id)
AF128847   .f 1 to 2556 4 to 2562 E219G F254C tiling clone,   2562/2566
(99 %)
12 diff
(99.6 %id)
BC106902 PCR rescued clones .f 1 to 1151 4 to 1154 D28N M205V F254C tiling clone,   1154/1154
(100 %)
4 diff
(99.7 %id)
BC106903 PCR rescued clones .f 1 to 1151 4 to 1154 D28N M205V F254C     1154/1154
(100 %)
4 diff
(99.7 %id)
NM_006774.4   .f 1 to 2556 4 to 2559 exact RefSeq, AAA   2559/2559
(100 %)
0 diff
(100 %id)
DA012081 adrenal gland .f 1 to 566 4 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA920005 small intestine .f 1 to 557 4 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB265177 uterus .f 1 to 587 3 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
BQ227479 melanotic melanoma, skin .f 13 to 585 1 to 584       584/1063
(54 %)
16 diff
(98.5 %id)
BI771568 pooled lung and spleen .f 14 to 809 1 to 791 D19T Y20T L21W A22L T23L ... available from MGC,   791/797
(99 %)
11 diff
(98.7 %id)
TI_57183113   .f 14 to 809 33 to 823 D19T Y20T L21W A22L T23L ...     791/829
(95 %)
16 diff
(98.1 %id)
CF125241 Chondrosarcoma Lung Metastasis cell lines, lung .f 15 to 720 1 to 706       706/706
(100 %)
2 diff
(99.8 %id)
TI_154186767   .f 15 to 875 113 to 968   tiling clone,   856/1019
(84 %)
27 diff
(97.4 %id)
BC033813 Lung, Spleen, fetal, pooled .f 16 to 2556 1 to 2550   tiling clone, available from MGC, AAA   2550/2550
(100 %)
9 diff
(99.7 %id)
CB267771 adipose .f 31 to 614 1 to 584       584/585
(99 %)
1 diff
(99.9 %id)
CB265232 adipose .f 126 to 678 1 to 550       550/551
(99 %)
5 diff
(99.1 %id)
CB266979 adipose .f 130 to 565 1 to 435       435/435
(100 %)
3 diff
(99.4 %id)
AK313832 lung .g 1 to 802 2 to 803 C74F E218G F253C tiling clone,   803/803
(100 %)
3 diff
(99.7 %id)
DA594435 lung .g 1 to 559 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA566196 heart .g 506 to 995 2 to 491   capped   490/490
(100 %)
3 diff
(99.4 %id)
BP292525 lung .g 510 to 1058 1 to 550   tiling clone,   550/550
(100 %)
8 diff
(98.6 %id)
BP381651 adipose tissue .g 1001 to 1620 1 to 625   tiling clone,   625/625
(100 %)
6 diff
(99.1 %id)
BP381671 adipose tissue .g 1001 to 1602 1 to 607       607/607
(100 %)
5 diff
(99.2 %id)
AA328710   .g 1057 to 1350 1 to 297       297/319
(93 %)
8 diff
(97.5 %id)
CF127609 Chondrosarcoma Lung Metastasis cell lines, lung .g 1129 to 1870 1 to 742   tiling clone,   742/742
(100 %)
2 diff
(99.8 %id)
TI_154193158   .g 1129 to 2025 51 to 936       886/987
(89 %)
23 diff
(97.7 %id)
CA442156 lung, Lung Focal Fibrosis .g 1355 to 2048 1 to 692     Submitted on the opposite strand 692/692
(100 %)
4 diff
(99.5 %id)
BM997789 lung, Lung Focal Fibrosis .g 1547 to 2154 18 to 625   tiling clone, Submitted on the opposite strand 608/638
(95 %)
7 diff
(99.0 %id)
AW955889   .g 1550 to 2229 1 to 676       676/676
(100 %)
13 diff
(98.1 %id)
CN359094 embryonic stem cells, DMSO-treated H9 cellline .g 1629 to 2307 18 to 697       680/697
(97 %)
6 diff
(99.2 %id)
BF828214 head_normal .g 1646 to 2156 79 to 588       510/588
(86 %)
7 diff
(98.9 %id)
BG991632 head_neck .g 1681 to 2060 5 to 385       381/393
(96 %)
6 diff
(98.5 %id)
T63558 lung .g 1690 to 1947 1 to 259       259/259
(100 %)
2 diff
(99.3 %id)
TI_149287031   .g 1706 to 2553 919 to 80   AAA   840/1130
(74 %)
14 diff
(98.8 %id)
CD245397 White Matter .g 1731 to 2551 856 to 31   AAA Submitted on the opposite strand 826/839
(98 %)
14 diff
(98.4 %id)
TI_154054594   .g 1732 to 2552 924 to 108   AAA   817/970
(84 %)
11 diff
(98.9 %id)
AA152276 uterus .g 1779 to 2384 1 to 618       618/618
(100 %)
23 diff
(96.3 %id)
AA490578 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 1780 to 2211 1 to 432   fully sequenced,   432/432
(100 %)
1 diff
(99.8 %id)
TI_149286448   .g 1806 to 2553 835 to 88   tiling clone, AAA   748/1105
(67 %)
1 diff
(100.0 %id)
AA193391 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 1812 to 2323 1 to 529       529/529
(100 %)
19 diff
(96.5 %id)
T94469 lung .g 1828 to 2107 1 to 287       287/341
(84 %)
15 diff
(95.7 %id)
W07497 lung .g 1833 to 2162 1 to 333       333/333
(100 %)
8 diff
(97.6 %id)
TI_154037301   .g 1849 to 2552 778 to 78   AAA   701/805
(87 %)
17 diff
(97.9 %id)
AA487680 lung .g 1853 to 2291 1 to 439   fully sequenced,   439/439
(100 %)
0 diff
(100 %id)
BM972025 lung .g 1859 to 2553 713 to 19   AAA   695/695
(100 %)
1 diff
(99.9 %id)
TI_154026723   .g 1866 to 2553 800 to 123   AAA   678/751
(90 %)
14 diff
(98.2 %id)
BM972420 lung .g 1867 to 2553 705 to 19   AAA   687/687
(100 %)
0 diff
(100 %id)
BQ328903 lung_normal .g 1868 to 2230 10 to 372       363/372
(97 %)
10 diff
(97.4 %id)
BQ328902 lung_normal .g 1870 to 2237 385 to 20       366/387
(94 %)
0 diff
(100 %id)
CA418436 Chondrosarcoma Grade II, Left Pelvis .g 1882 to 2552 688 to 19   AAA   670/670
(100 %)
2 diff
(99.8 %id)
BQ328916 lung_normal .g 1886 to 2235 351 to 2       350/351
(99 %)
0 diff
(100 %id)
BM992622 lung, Metastatic Chondrosarcoma .g 1889 to 2553 682 to 19   AAA   664/664
(100 %)
2 diff
(99.7 %id)
BM990957 lung, Lung Focal Fibrosis .g 1912 to 2553 660 to 19   AAA   642/642
(100 %)
3 diff
(99.6 %id)
AA317095 lung .g 1923 to 2215 1 to 296       296/306
(96 %)
5 diff
(98.4 %id)
T62596 lung .g 1949 to 2273 1 to 333   fully sequenced,   333/333
(100 %)
7 diff
(97.9 %id)
CA440322 lung, Lung Focal Fibrosis .g 1954 to 2553 615 to 19   AAA   597/597
(100 %)
4 diff
(99.4 %id)
BM702146 eye, optic nerve .g 1973 to 2555 1 to 582   AAA   582/582
(100 %)
3 diff
(99.5 %id)
AW002950 pooled germ cell tumors .g 1996 to 2552 556 to 1       556/556
(100 %)
2 diff
(99.7 %id)
AA442346   .g 2002 to 2471 1 to 470       470/470
(100 %)
0 diff
(100 %id)
BQ015743 lung, Metastatic Chondrosarcoma .g 2005 to 2553 567 to 19   AAA   549/549
(100 %)
0 diff
(100 %id)
BF062830 colon, colon tumor, RER+ .g 2014 to 2552 543 to 5       539/543
(99 %)
0 diff
(100 %id)
T63483 lung .g 2022 to 2521 513 to 3       511/513
(99 %)
0 diff
(100 %id)
BE467443 carcinoid, lung .g 2025 to 2552 529 to 3       527/529
(99 %)
0 diff
(100 %id)
T92703 lung .g 2036 to 2312 1 to 284       284/317
(89 %)
11 diff
(96.6 %id)
T39246 lung .g 2038 to 2331 1 to 287   fully sequenced,   287/287
(100 %)
9 diff
(96.9 %id)
AA486833 lung .g 2038 to 2299 1 to 263   fully sequenced,   263/263
(100 %)
1 diff
(99.7 %id)
AI913388 Kidney .g 2043 to 2550 513 to 6       508/513
(99 %)
0 diff
(100 %id)
CA444425 lung, Metastatic Chondrosarcoma .g 2048 to 2552 523 to 19   AAA   505/505
(100 %)
0 diff
(100 %id)
AW206056   .g 2052 to 2554 520 to 18   AAA   503/503
(100 %)
1 diff
(99.9 %id)
AW772077 Kidney .g 2055 to 2552 500 to 4       497/500
(99 %)
0 diff
(100 %id)
BM955888 tonsil .g 2068 to 2237 1 to 170       170/170
(100 %)
1 diff
(99.5 %id)
AW577108 breast .g 2082 to 2413 1 to 330       330/337
(97 %)
7 diff
(98.0 %id)
BF437500 Prostate .g 2082 to 2553 475 to 4       472/475
(99 %)
0 diff
(100 %id)
T82340 lung .g 2090 to 2393 1 to 308       308/430
(71 %)
9 diff
(98.0 %id)
AI138297   .g 2095 to 2552 461 to 4       458/461
(99 %)
0 diff
(100 %id)
AI192769 lung .g 2096 to 2552 460 to 4       457/460
(99 %)
0 diff
(100 %id)
AW081183 colon, moderately differentiated adenocarcinoma .g 2096 to 2553 463 to 6       458/463
(98 %)
0 diff
(100 %id)
CA444415 lung, Metastatic Chondrosarcoma .g 2098 to 2552 473 to 19   AAA   455/455
(100 %)
3 diff
(99.4 %id)
AI131260 heart .g 2100 to 2553 460 to 7       454/460
(98 %)
0 diff
(100 %id)
AI685769 Prostate .g 2100 to 2553 456 to 4       453/456
(99 %)
0 diff
(100 %id)
AA493982 thyroid .g 2101 to 2552 457 to 8       450/457
(98 %)
0 diff
(100 %id)
AW084658 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .g 2101 to 2552 452 to 1       452/452
(100 %)
0 diff
(100 %id)
AI041615 senescent fibroblast .g 2103 to 2553 456 to 6       451/456
(98 %)
0 diff
(100 %id)
AI192632 lung .g 2104 to 2552 449 to 1       449/449
(100 %)
4 diff
(99.2 %id)
AA493960 thyroid .g 2107 to 2553 465 to 21   AAA   445/445
(100 %)
2 diff
(99.6 %id)
BM993237 lung, Metastatic Chondrosarcoma .g 2109 to 2552 462 to 19   AAA   444/444
(100 %)
0 diff
(100 %id)
BQ029558 lung, Metastatic Chondrosarcoma .g 2109 to 2553 463 to 19   AAA   445/445
(100 %)
0 diff
(100 %id)
AA719369   .g 2115 to 2560 450 to 7       444/450
(98 %)
0 diff
(100 %id)
BF221501 pooled germ cell tumors .g 2115 to 2552 438 to 1       438/438
(100 %)
0 diff
(100 %id)
AI021925 liver and spleen .g 2116 to 2553 437 to 1       437/437
(100 %)
2 diff
(99.6 %id)
BE220148 carcinoid, lung .g 2117 to 2552 436 to 1       436/436
(100 %)
0 diff
(100 %id)
BF445361 carcinoid, lung .g 2117 to 2553 440 to 4       437/440
(99 %)
0 diff
(100 %id)
AI819911 2 pooled tumors (clear cell type), Kidney .g 2127 to 2555 432 to 4       429/432
(99 %)
0 diff
(100 %id)
AW316601 brain, three pooled meningiomas .g 2134 to 2553 420 to 1       420/420
(100 %)
1 diff
(99.8 %id)
T94381 lung .g 2138 to 2521 394 to 1       394/397
(99 %)
17 diff
(95.8 %id)
AA826595 carcinoid, lung .g 2138 to 2550 413 to 1       413/413
(100 %)
4 diff
(99.1 %id)
AI640230 Kidney .g 2140 to 2514 422 to 48       375/422
(88 %)
0 diff
(100 %id)
AA630356 lung .g 2143 to 2553 429 to 21   AAA   409/409
(100 %)
6 diff
(98.6 %id)
AA931051 Kidney .g 2143 to 2555 414 to 5       410/417
(98 %)
0 diff
(100 %id)
AW304891 brain, three pooled meningiomas .g 2151 to 2554 404 to 1       404/404
(100 %)
0 diff
(100 %id)
AA775015 lung .g 2161 to 2523 361 to 1       361/361
(100 %)
5 diff
(98.7 %id)
AI983278 pooled germ cell tumors .g 2166 to 2546 381 to 2       380/381
(99 %)
0 diff
(100 %id)
AI269158 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 2169 to 2553 393 to 9       385/393
(97 %)
0 diff
(100 %id)
AI654718 pooled germ cell tumors .g 2169 to 2553 390 to 6       385/390
(98 %)
0 diff
(100 %id)
BE671736 pooled germ cell tumors .g 2169 to 2553 390 to 6       385/390
(98 %)
0 diff
(100 %id)
AI686636 Prostate .g 2173 to 2553 396 to 16   AAA   381/381
(100 %)
1 diff
(99.8 %id)
AW166482 cervix .g 2174 to 2553 380 to 1       380/380
(100 %)
0 diff
(100 %id)
TI_154091484   .g 2179 to 2551 470 to 98   AAA   373/958
(38 %)
0 diff
(100 %id)
CA434375 lung, Metastatic Chondrosarcoma .g 2179 to 2551 391 to 19   AAA   373/381
(97 %)
0 diff
(100 %id)
AA496980 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 2181 to 2557 385 to 11   fully sequenced,   375/385
(97 %)
11 diff
(97.2 %id)
H75779 liver and spleen .g 2191 to 2553 379 to 12       368/384
(95 %)
0 diff
(100 %id)
AI301264 carcinoid, lung .g 2195 to 2553 359 to 1       359/359
(100 %)
0 diff
(100 %id)
AI702805 carcinoid, lung .g 2195 to 2552 358 to 1       358/359
(99 %)
0 diff
(100 %id)
AI803209 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 2202 to 2554 374 to 22   AAA   353/354
(99 %)
0 diff
(100 %id)
AW172262 pooled .g 2203 to 2553 351 to 1       351/351
(100 %)
0 diff
(100 %id)
AW271615 Kidney .g 2210 to 2553 344 to 1       344/344
(100 %)
2 diff
(99.5 %id)
AI202205 Prostate .g 2211 to 2552 372 to 31   AAA   342/342
(100 %)
9 diff
(97.4 %id)
AA150442.
matches multiple genes
uterus .g 2213 to 2551 358 to 19   AAA also hits gene C11orf67 340/344
(98 %)
13 diff
(96.3 %id)
AI650766 Kidney .g 2215 to 2553 348 to 10       339/348
(97 %)
0 diff
(100 %id)
BE646140 Prostate .g 2215 to 2553 350 to 13   AAA   338/338
(100 %)
3 diff
(99.2 %id)
BE671856 pooled germ cell tumors .g 2221 to 2553 333 to 1       333/333
(100 %)
0 diff
(100 %id)
AI379244 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 2241 to 2555 319 to 6       314/319
(98 %)
0 diff
(100 %id)
T62524 lung .g 2243 to 2531 275 to 1   fully sequenced,   275/275
(100 %)
11 diff
(96.0 %id)
H68592 nose, olfactory epithelium .g 2243 to 2550 1 to 316       316/324
(97 %)
12 diff
(96.3 %id)
AI216784 carcinoid, lung .g 2243 to 2552 313 to 3       311/314
(99 %)
0 diff
(100 %id)
AA631366 thyroid .g 2254 to 2554 318 to 20   AAA   299/299
(100 %)
2 diff
(99.4 %id)
AA487465 lung .g 2261 to 2552 291 to 1   fully sequenced,   291/291
(100 %)
4 diff
(98.7 %id)
AA650014 normal prostate, Prostate .g 2261 to 2552 309 to 21       289/309
(93 %)
0 diff
(100 %id)
AI826627 normal prostate, Prostate .g 2268 to 2554 287 to 1       287/287
(100 %)
1 diff
(99.7 %id)
AA487190 lung .g 2269 to 2553 284 to 1   fully sequenced,   284/284
(100 %)
1 diff
(99.7 %id)
AI620436 Prostate .g 2270 to 2554 283 to 1       283/283
(100 %)
3 diff
(99.0 %id)
AI674488 Prostate .g 2271 to 2552 299 to 18   AAA   282/282
(100 %)
1 diff
(99.7 %id)
BF437364 Prostate .g 2271 to 2552 289 to 8       282/289
(97 %)
0 diff
(100 %id)
BF850398 lung_normal .g 2279 to 2461 184 to 4     Submitted on the opposite strand 181/184
(98 %)
0 diff
(100 %id)
BF850400 lung_normal .g 2279 to 2452 174 to 1     Submitted on the opposite strand 174/174
(100 %)
0 diff
(100 %id)
BF850345 lung_normal .g 2286 to 2461 1 to 177       177/181
(97 %)
4 diff
(97.8 %id)
AA335325 epididymis .g 2293 to 2535 1 to 242       242/242
(100 %)
3 diff
(98.8 %id)
AA335478 epididymis .g 2293 to 2553 1 to 260       260/260
(100 %)
3 diff
(98.9 %id)
AA335791 epididymis .g 2293 to 2553 1 to 261       261/261
(100 %)
4 diff
(98.5 %id)
AW952563   .g 2295 to 2553 1 to 258       258/414
(62 %)
3 diff
(99.3 %id)
T40493 lung .g 2301 to 2522 220 to 1   fully sequenced,   220/220
(100 %)
4 diff
(98.2 %id)
AA732741   .g 2304 to 2552 252 to 4       249/252
(98 %)
0 diff
(100 %id)
N78639 lung .g 2334 to 2554 219 to 1       219/219
(100 %)
3 diff
(98.7 %id)
AI745378 Prostate .g 2368 to 2553 207 to 22   AAA   186/186
(100 %)
4 diff
(97.9 %id)
DA391451 thalamus .h 1 to 559 8 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA107961 cerebellum .h 1 to 560 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
BE902616 choriocarcinoma, placenta .h 106 to 848 1 to 727 L22C H23I E25N L27S Y28I ... tiling clone,   727/946
(76 %)
24 diff
(97.5 %id)
BM930514 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 1 to 647 1 to 647   tiling clone, fully sequenced, Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 647/647
(100 %)
1 diff
(99.9 %id)
BU743187 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 249 to 670 428 to 7   tiling clone, fully sequenced, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 422/428
(98 %)
0 diff
(100 %id)
DA561506 heart .j 1 to 507 2 to 518   tiling clone, capped   517/519
(99 %)
14 diff
(97.4 %id)
AK309688   .j 103 to 1068 1 to 965 G169E A170P L171W A172L V173Y ... tiling clone,   965/965
(100 %)
1 diff
(99.9 %id)
NM_001185061.1   .j 103 to 2764 1 to 2662 exact RefSeq,   2662/2662
(100 %)
0 diff
(100 %id)
DA714636   .j 104 to 659 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
BG823505 adenocarcinoma cell line, colon .k 1 to 867 1 to 875 G19A Y82F P126T T127Q S128Q ... tiling clone,   875/1083
(80 %)
43 diff
(96.1 %id)
Z42266 brain, total brain .k 653 to 890 1 to 238   tiling clone,   238/238
(100 %)
2 diff
(99.2 %id)
F01784 brain, total brain .k 2230 to 2452 223 to 1   tiling clone,   223/223
(100 %)
0 diff
(100 %id)
W76654 heart .l 1 to 419 1 to 421   tiling clone,   366/421
(86 %)
13 diff
(97.0 %id)
W73066 heart .l 967 to 1231 266 to 1   tiling clone,   266/266
(100 %)
3 diff
(98.9 %id)
AK309608   .m 1 to 964 2 to 965 exact tiling clone,   965/965
(100 %)
0 diff
(100 %id)
NM_001185060.1   .m 1 to 2486 2 to 2487 exact RefSeq,   2487/2487
(100 %)
0 diff
(100 %id)
DA647899   .m 1 to 541 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
BQ722411 sympathetic trunk .n 1 to 878 1 to 879 exact tiling clone,   879/987
(89 %)
20 diff
(98.0 %id)
AK309691   .o 1 to 1010 2 to 1011 exact tiling clone,   1011/1011
(100 %)
0 diff
(100 %id)
DA718634   .o 1 to 561 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
NM_001185062.1   .o 72 to 2505 1 to 2434 exact RefSeq,   2434/2434
(100 %)
0 diff
(100 %id)
DA712111   .o 73 to 606 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
BI008206 kidney_tumor .o 818 to 1148 338 to 8       331/338
(97 %)
0 diff
(100 %id)
BQ880006 dorsal root ganglia .o 843 to 1724 1 to 888       888/915
(97 %)
10 diff
(99.0 %id)
CN419061 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .o 849 to 1476 1 to 628       628/628
(100 %)
0 diff
(100 %id)
BU149604 dorsal root ganglia .o 913 to 1768 1 to 865       865/903
(95 %)
9 diff
(99.1 %id)
CD519024 White Matter .o 947 to 1839 1 to 904       904/916
(98 %)
19 diff
(98.0 %id)
BU838557 dorsal root ganglia .o 971 to 1886 1 to 920   tiling clone,   920/932
(98 %)
16 diff
(98.3 %id)
CN419063 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .o 1108 to 1735 1 to 628       628/628
(100 %)
0 diff
(100 %id)
FN080845 breast carcinoma .o 1133 to 1220 87 to 1     Submitted on the opposite strand 87/88
(98 %)
3 diff
(96.6 %id)
BF827169 head_normal .o 1206 to 1520 316 to 1     Submitted on the opposite strand 316/316
(100 %)
19 diff
(94.0 %id)
BF827831 head_normal .o 1210 to 1631 432 to 5     Submitted on the opposite strand 428/437
(97 %)
0 diff
(100 %id)
BE172883 head_neck .o 1213 to 1604 419 to 28     Submitted on the opposite strand 392/419
(93 %)
0 diff
(100 %id)
BF741620 bocio_tumor .o 1251 to 1570 321 to 2     Submitted on the opposite strand 320/321
(99 %)
0 diff
(100 %id)
AW606633 head_neck .o 1325 to 1504 179 to 1       179/179
(100 %)
11 diff
(93.9 %id)
AW606748 head_neck .o 1325 to 1504 179 to 1       179/179
(100 %)
11 diff
(93.9 %id)
AW983648 head_normal .o 1331 to 1628 300 to 5     Submitted on the opposite strand 296/315
(93 %)
0 diff
(100 %id)
BF810406 colon_ins .o 1337 to 1625 311 to 24     Submitted on the opposite strand 288/311
(92 %)
0 diff
(100 %id)
BF814642 colon_ins .o 1337 to 1628 308 to 17     Submitted on the opposite strand 292/308
(94 %)
0 diff
(100 %id)
AW983652 head_normal .o 1348 to 1628 293 to 13     Submitted on the opposite strand 281/293
(95 %)
0 diff
(100 %id)
AA078648 placenta .o 1404 to 1671 270 to 2       269/270
(99 %)
0 diff
(100 %id)
CB268447 adipose .o 1408 to 2083 1 to 677       677/677
(100 %)
3 diff
(99.6 %id)
CF453864 peripheral nervous system .o 1453 to 2182 1 to 729       729/731
(99 %)
2 diff
(99.8 %id)
BG953576 colon .o 1469 to 2005 536 to 1       536/536
(100 %)
15 diff
(97.3 %id)
AW983888 head_normal .o 1485 to 1926 445 to 6     Submitted on the opposite strand 440/454
(96 %)
0 diff
(100 %id)
BQ345320 nervous_tumor .o 1638 to 2125 488 to 1       488/488
(100 %)
5 diff
(99.0 %id)
BQ345323 nervous_tumor .o 1638 to 2137 529 to 30       500/529
(94 %)
0 diff
(100 %id)
BF338385 brain, glioblastoma with EGFR amplification .o 1659 to 2363 1 to 711   tiling clone,   711/1074
(66 %)
10 diff
(99.1 %id)
TI_149293558   .o 1665 to 2505 921 to 85   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 837/971
(86 %)
9 diff
(99.1 %id)
BF756275 colon .o 1683 to 2065 393 to 12     Submitted on the opposite strand 382/393
(97 %)
0 diff
(100 %id)
BM712137 eye, lens .o 1694 to 2291 1 to 598       598/598
(100 %)
4 diff
(99.4 %id)
TI_154011348   .o 1707 to 2505 923 to 112   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 812/1335
(60 %)
33 diff
(97.6 %id)
CV575548 cornea, eye .o 1732 to 2350 1 to 619       619/619
(100 %)
0 diff
(100 %id)
BU682682 lung .o 1765 to 2505 758 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 740/740
(100 %)
1 diff
(99.9 %id)
TI_149278140   .o 1796 to 2505 797 to 88   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 710/711
(99 %)
0 diff
(100 %id)
BU615845 Bone, Subchondral Bone .o 1800 to 2505 723 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 705/705
(100 %)
1 diff
(99.9 %id)
BQ014379 Chondrosarcoma, Left Pubic Bone .o 1802 to 2505 721 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 703/703
(100 %)
1 diff
(99.9 %id)
TI_149292987   .o 1835 to 2505 728 to 65   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 664/781
(85 %)
18 diff
(97.7 %id)
BQ017042 lung, Metastatic Chondrosarcoma .o 1866 to 2499 652 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 634/634
(100 %)
0 diff
(100 %id)
BU678243 lung .o 1869 to 2505 655 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 637/637
(100 %)
0 diff
(100 %id)
BF337223 brain, glioblastoma with EGFR amplification .o 1876 to 2506 1 to 631   tiling clone,   631/659
(95 %)
2 diff
(99.7 %id)
BM710077 eye, optic nerve .o 1884 to 2077 1 to 194   fully sequenced, Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 194/194
(100 %)
0 diff
(100 %id)
TI_149291409   .o 1888 to 2505 721 to 105   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 617/914
(67 %)
4 diff
(99.6 %id)
BM974030 lung .o 1893 to 2505 630 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 612/616
(99 %)
3 diff
(99.6 %id)
BQ003063 Chondrosarcoma, Left Pelvis .o 1911 to 2505 613 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 595/595
(100 %)
0 diff
(100 %id)
BU737833 eye, lens .o 1937 to 2505 587 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 569/569
(100 %)
0 diff
(100 %id)
BE827500 lung_tumor .o 1992 to 2094 106 to 5       102/106
(96 %)
0 diff
(100 %id)
Z28540 leg muscle, skeletal muscle .o 2036 to 2289 255 to 2       254/255
(99 %)
0 diff
(100 %id)
G31737   .o 2036 to 2289 255 to 2     Submitted on the opposite strand 254/255
(99 %)
0 diff
(100 %id)
AJ709948 heart .o 2047 to 2427 381 to 1     Submitted on the opposite strand 381/381
(100 %)
9 diff
(97.7 %id)
BM671238 eye, optic nerve .o 2047 to 2505 477 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 459/459
(100 %)
2 diff
(99.6 %id)
DN949309.
matches multiple genes
Pancreas, Purified pancreatic islet .o 2100 to 2505 417 to 12   fully sequenced, Submitted on the opposite strand, also hits gene LOC146880 406/417
(97 %)
0 diff
(100 %id)
AL589236 human spinal cord .o 2168 to 2505 383 to 46     Submitted on the opposite strand 338/383
(88 %)
0 diff
(100 %id)
AW068060 Bone, Hip .o 2191 to 2505 337 to 23       315/337
(93 %)
0 diff
(100 %id)
BE797600 lung, small cell carcinoma .p-u 1 to 828 39 to 860 T2H V31W A32P S33H L34S ... tiling clone,   822/950
(86 %)
21 diff
(97.8 %id)
BG107820 Bone, osteosarcoma, cell line .p-u 56 to 510 1 to 455   tiling clone,   455/458
(99 %)
1 diff
(99.8 %id)
BU172312 melanotic melanoma, skin .p-u 463 to 1324 1 to 871   tiling clone,   871/872
(99 %)
13 diff
(98.6 %id)
CB104808 stomach .p-u 464 to 1037 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
CB106726 stomach .p-u 464 to 936 1 to 470       470/470
(100 %)
1 diff
(99.8 %id)
BQ019050 lung, Metastatic Chondrosarcoma .p-u 1160 to 1844 703 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 685/685
(100 %)
0 diff
(100 %id)
CA749046 cell lines, Chondrosarcoma .p-u 1248 to 1844 609 to 12   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 598/598
(100 %)
2 diff
(99.7 %id)
BE857689 Prostate .p-u 1351 to 1838 489 to 1       489/489
(100 %)
3 diff
(99.4 %id)
AI925865 adenocarcinoma, Pancreas .p-u 1375 to 1840 466 to 1       466/466
(100 %)
2 diff
(99.6 %id)
BX097219 adenocarcinoma, Pancreas .p-u 1381 to 1837 471 to 15   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 457/457
(100 %)
0 diff
(100 %id)
AI925859 adenocarcinoma, Pancreas .p-u 1402 to 1840 440 to 1       440/440
(100 %)
1 diff
(99.8 %id)
R26416 placenta .p-u 1428 to 1843 1 to 433     Submitted on the opposite strand 433/433
(100 %)
31 diff
(92.9 %id)
AI800337 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .p-u 1599 to 1843 247 to 3       245/247
(99 %)
0 diff
(100 %id)
G31739   .p-u 1615 to 1837 223 to 1     Submitted on the opposite strand 223/223
(100 %)
0 diff
(100 %id)
AY312580 lung .q 1 to 472 1 to 472 exact tiling clone,   472/472
(100 %)
0 diff
(100 %id)
CB955801 Pooled-Glandular .r 1 to 696 1 to 710 P110A G111R L112S T113H S115V ... tiling clone,   710/754
(94 %)
22 diff
(97.1 %id)
CN282079 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .s 1 to 707 1 to 707 exact tiling clone,   707/707
(100 %)
1 diff
(99.9 %id)
AK309519 lung .t 1 to 1056 2 to 1057 exact tiling clone,   1057/1057
(100 %)
4 diff
(99.7 %id)
DA584716 lung .t 1 to 589 2 to 590 exact capped   589/589
(100 %)
1 diff
(99.9 %id)
DA058092 cerebellum .t 301 to 849 2 to 550   tiling clone, capped   549/549
(100 %)
1 diff
(99.9 %id)
DA562339 heart .t 301 to 899 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
DA822842 pericardium .t 302 to 890 2 to 591   capped   590/590
(100 %)
3 diff
(99.5 %id)
DA943005 Spleen .t 302 to 885 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
BP291635 lung .t 359 to 938 1 to 581       581/581
(100 %)
6 diff
(99.0 %id)
AK128558 trachea .u 1 to 3560 2 to 3562 exact tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 3562/3562
(100 %)
15 diff
(99.6 %id)
DB226072 trachea .u 1 to 591 2 to 592 exact capped   591/591
(100 %)
1 diff
(99.9 %id)
BX387367 Neuroblastoma Cot 25-normalized .u 2890 to 3554 1 to 664   tiling clone, AAA Possibly primed on the genome, locally A rich (22/23 A in genome downstream of last aligned base) 664/664
(100 %)
2 diff
(99.7 %id)
BX394167 Neuroblastoma Cot 25-normalized .u 2890 to 3554 1 to 665   AAA Possibly primed on the genome, locally A rich (22/23 A in genome downstream of last aligned base) 665/665
(100 %)
11 diff
(98.4 %id)
AA595466 Prostate, prostate tumor .u 3013 to 3540 528 to 1       528/528
(100 %)
2 diff
(99.7 %id)
DB349693 trachea .u 3013 to 3560 548 to 1       548/548
(100 %)
7 diff
(98.8 %id)
DA147926 amygdala .va 1 to 542 2 to 543 exact tiling clone, to resequence, capped   542/542
(100 %)
3 diff
(99.5 %id)
DB301561 amygdala .va 1336 to 1801 466 to 1   tiling clone, to resequence,   466/466
(100 %)
1 diff
(99.8 %id)
CB269454 adipose .vb-u 1 to 593 1 to 592 H5P V6Y P8L A9L C10A ... tiling clone,   592/592
(100 %)
6 diff
(99.0 %id)
DB112548 thymus .vc-u 1 to 574 2 to 575 exact tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
DA310816 hippocampus .vd 1 to 561 2 to 562 exact tiling clone, capped   561/562
(99 %)
1 diff
(99.9 %id)
DA441066 tongue, tumor tissue .ve 1 to 547 2 to 548 exact tiling clone, capped   547/547
(100 %)
0 diff
(100 %id)
AW134890   .vf-u 1 to 296 313 to 18 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 296/298
(99 %)
0 diff
(100 %id)
BI769944 pooled lung and spleen Gene INMTandFAM188BandAQP1, variant not shown              
TI_57183368   Gene INMTandFAM188BandAQP1, variant not shown              
254 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p-u, .q, .r, .s, .t, .u, .va, .vb-u, .vc-u, .vd, .ve, .vf-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI