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Gene APOB48RTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
57 supporting clones for gene APOB48R back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA675303   .a 1 to 568 2 to 570   tiling clone, capped   569/569
(100 %)
1 diff
(99.9 %id)
BG986011 denis_drash .a 16 to 343 1 to 327       327/327
(100 %)
5 diff
(98.5 %id)
BC119788 PCR rescued clones .a 23 to 3231 1 to 3209 V314A tiling clone,   3209/3209
(100 %)
1 diff
(100.0 %id)
BP271486 small intestine .a 26 to 585 1 to 560       560/594
(94 %)
28 diff
(95.3 %id)
CR992486 T-Lymphocytes .a 913 to 1805 1 to 892       892/892
(100 %)
4 diff
(99.6 %id)
BI015793 lung_tumor .a 1067 to 1461 30 to 424       395/424
(93 %)
0 diff
(100 %id)
BG982447 colon_normal .a 1243 to 1477 239 to 6       234/244
(95 %)
0 diff
(100 %id)
BI015791 lung_tumor .a 1246 to 1525 174 to 451       278/451
(61 %)
0 diff
(100 %id)
DA343694 substantia nigra .a 1307 to 1860 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA670055   .a 1432 to 1982 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BQ327686 kidney_tumor .a 1466 to 1727 26 to 288       263/288
(91 %)
0 diff
(100 %id)
BI016391 lung_tumor .a 1523 to 1895 1 to 372       372/372
(100 %)
10 diff
(97.4 %id)
CT000885 T-Lymphocytes .a 1529 to 2101 1 to 573       573/576
(99 %)
2 diff
(99.7 %id)
BG336644 choriocarcinoma, placenta .a 1574 to 2058 1 to 492       492/1074
(45 %)
12 diff
(98.9 %id)
BI016605 lung_tumor .a 1614 to 2122 507 to 5       503/509
(98 %)
36 diff
(93.0 %id)
BX644500   .a 1736 to 2498 1 to 759       759/761
(99 %)
17 diff
(97.8 %id)
BF869990 lung_tumor .a 1774 to 2096 323 to 1     Submitted on the opposite strand 323/323
(100 %)
2 diff
(99.4 %id)
GD139694   .a 1823 to 2188 1 to 366   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 366/369
(99 %)
7 diff
(98.2 %id)
BI029478 marrow .a 1844 to 2024 7 to 187       181/187
(96 %)
0 diff
(100 %id)
BI029476 marrow .a 1859 to 2024 1 to 166       166/166
(100 %)
1 diff
(99.4 %id)
AK025123 colon .a 1937 to 3558 22 to 1643   tiling clone, available from FLJ, AAA   1622/1622
(100 %)
3 diff
(99.9 %id)
AA348792 adrenal gland .a 1946 to 2232 1 to 288       288/290
(99 %)
5 diff
(98.3 %id)
CR988457 T-Lymphocytes .a 2371 to 3107 1 to 736       736/736
(100 %)
1 diff
(99.9 %id)
CD629458   .a 2416 to 2855 450 to 11       440/463
(95 %)
5 diff
(99.0 %id)
CD629452   .a 2424 to 2855 18 to 442       425/452
(94 %)
4 diff
(99.2 %id)
CD629453   .a 2424 to 2855 442 to 11       432/462
(93 %)
1 diff
(99.8 %id)
CD629454   .a 2424 to 2855 441 to 11       431/461
(93 %)
2 diff
(99.6 %id)
CD629455   .a 2424 to 2855 21 to 460       440/470
(93 %)
2 diff
(99.6 %id)
CD629457   .a 2424 to 2855 435 to 10       426/455
(93 %)
6 diff
(98.7 %id)
CD629459   .a 2424 to 2855 21 to 452       432/462
(93 %)
2 diff
(99.6 %id)
CR996033 T-Lymphocytes .a 2456 to 3211 1 to 755       755/760
(99 %)
3 diff
(99.7 %id)
BE538152 cervix .a 2473 to 3211 1 to 743       743/903
(82 %)
35 diff
(96.2 %id)
CD629456   .a 2626 to 2855 103 to 331       308/341
(90 %)
19 diff
(94.5 %id)
BI022728 marrow .a 2672 to 2845 1 to 174       174/174
(100 %)
5 diff
(97.2 %id)
BI022724 marrow .a 2720 to 2841 123 to 2       122/123
(99 %)
1 diff
(99.2 %id)
CB146818 Liver .a 2756 to 3195 1 to 440       440/440
(100 %)
5 diff
(98.9 %id)
CA307418 Alveolar Macrophage, lung .a 2859 to 3540 700 to 19   AAA   682/682
(100 %)
1 diff
(99.9 %id)
CA307455 Alveolar Macrophage, lung .a 2974 to 3540 587 to 19   AAA   569/569
(100 %)
2 diff
(99.7 %id)
BF738568 bladder_tumor .a 2975 to 3346 5 to 376       372/380
(97 %)
18 diff
(95.3 %id)
TI_149300342   .a 3030 to 3540 600 to 90   AAA   511/547
(93 %)
1 diff
(99.9 %id)
BM976428 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 3030 to 3540 529 to 19   AAA   511/511
(100 %)
1 diff
(99.9 %id)
AW874392 tumor, uterus .a 3084 to 3540 457 to 1   tiling clone,   457/457
(100 %)
0 diff
(100 %id)
CD368319 Alveolar Macrophage, lung .a 3089 to 3536 466 to 19   AAA   448/448
(100 %)
3 diff
(99.4 %id)
BX091811 colon, colonic mucosa from 5 ulcerative colitispatients .a 3113 to 3536 1 to 424   AAA   424/424
(100 %)
1 diff
(99.8 %id)
BG231934 blood, lymphocyte .a 3116 to 3553 443 to 6       438/443
(98 %)
0 diff
(100 %id)
AI673392 colon, colonic mucosa from 5 ulcerative colitispatients .a 3205 to 3542 340 to 3       338/340
(99 %)
0 diff
(100 %id)
BF900822 marrow .b-u 110 to 351 7 to 246   tiling clone,   240/246
(97 %)
15 diff
(94.0 %id)
BF359810 marrow .b-u 193 to 534 343 to 2   tiling clone,   342/343
(99 %)
0 diff
(100 %id)
CV354221 uterus_tumor .b-u 500 to 961 14 to 478   tiling clone,   465/480
(96 %)
30 diff
(93.8 %id)
AK075085 placenta .c 1 to 979 2 to 980   tiling clone, available from FLJ,   980/980
(100 %)
1 diff
(99.9 %id)
DA828664 placenta .c 1 to 702 2 to 707   capped   704/730
(96 %)
11 diff
(98.5 %id)
DB373243 placenta .c 744 to 979 236 to 1       236/236
(100 %)
1 diff
(99.6 %id)
AF141332   Gene APOB48R, variant not shown       AAA This clone was ignored    
AF141334 placenta Gene APOB48R, variant not shown       AAA This clone was ignored    
BC119786 PCR rescued clones Gene APOB48R, variant not shown         This clone was ignored    
BE902198 choriocarcinoma, placenta Gene APOB48R, variant not shown              
BM988197 mixed Gene APOB48R, variant not shown       AAA Suspected internal deletion, this clone was ignored    
NM_018690.2   Gene APOB48R, variant not shown       RefSeq, This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes D