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Gene APLNTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
107 supporting clones for gene APLN back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB481574 hippocampus .a 1 to 475 1 to 475   tiling clone,   475/475
(100 %)
0 diff
(100 %id)
NM_017413.4   .a 1 to 3222 1 to 3222 exact RefSeq, AAA   3222/3222
(100 %)
0 diff
(100 %id)
AL544890 placenta, Placenta Cot 25-normalized .a 14 to 984 37 to 996 R43X R61L     960/1083
(88 %)
18 diff
(98.4 %id)
AL544781 placenta, Placenta Cot 25-normalized .a 16 to 948 1 to 929 G37A A39P S40L I42*     929/929
(100 %)
11 diff
(98.9 %id)
BG420617 Kidney, renal cell adenocarcinoma .a 19 to 814 1 to 787 P16Q E17R G18V Q19K G20E ...     787/898
(87 %)
27 diff
(97.0 %id)
BM921930 pooled brain, lung, testis .a 19 to 927 7 to 924 R61L C108L S109*     918/1019
(90 %)
26 diff
(97.5 %id)
BC021104 Kidney, renal cell adenocarcinoma .a 20 to 2673 1 to 2654 exact tiling clone, available from MGC, AAA   2654/2654
(100 %)
1 diff
(100.0 %id)
AL546620 placenta, Placenta Cot 25-normalized .a 21 to 1038 1 to 1007 S10X R61L     1007/1033
(97 %)
18 diff
(98.3 %id)
BI823803 pooled brain, lung, testis .a 21 to 78 1 to 59       59/59
(100 %)
1 diff
(98.4 %id)
TI_57201055   .a 21 to 927 68 to 982 A11C T12H W13L C14V S15Q ...     915/982
(93 %)
25 diff
(97.5 %id)
DN999298   .a 22 to 713 1 to 692       692/692
(100 %)
8 diff
(98.9 %id)
BM811482 ovary (pool of 3) .a 23 to 806 15 to 808       794/1139
(69 %)
45 diff
(96.1 %id)
CX869782 embryonic stem .a 25 to 562 1 to 538       538/538
(100 %)
0 diff
(100 %id)
DR761924 embryonic stem .a 48 to 803 1 to 756       756/756
(100 %)
0 diff
(100 %id)
TI_57198272   .a 197 to 963 53 to 824 G24A P25L G26A R27G E28R ...     772/826
(93 %)
46 diff
(94.5 %id)
BI819879 pooled brain, lung, testis .a 203 to 963 1 to 766 G24A P25L G26A R27G E28R ...     766/768
(99 %)
41 diff
(94.7 %id)
AB023493 brain .a 327 to 560 1 to 234       234/234
(100 %)
0 diff
(100 %id)
AK312061 amygdala .a 421 to 807 1 to 387       387/387
(100 %)
0 diff
(100 %id)
DA165010 amygdala .a 422 to 996 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
AK001855 placenta .a 434 to 2673 1 to 2243   available from FLJ,   2243/2243
(100 %)
6 diff
(99.8 %id)
AU135471 placenta .a 435 to 1054 2 to 621   capped   620/620
(100 %)
3 diff
(99.6 %id)
CV029167 mixed .a 439 to 806 1 to 368       368/548
(67 %)
2 diff
(99.7 %id)
BG437722 large cell carcinoma, lung .a 717 to 1346 1 to 635       635/694
(91 %)
12 diff
(98.3 %id)
DA883790   .a 752 to 1305 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
CX870304 embryonic stem .a 779 to 1441 1 to 663   tiling clone,   663/663
(100 %)
0 diff
(100 %id)
BG006372 placenta_normal .a 784 to 1182 404 to 5       400/404
(99 %)
0 diff
(100 %id)
BG955351 colon .a 793 to 1027 15 to 248       234/248
(94 %)
6 diff
(97.6 %id)
BG956302 colon .a 793 to 1027 17 to 250       234/250
(93 %)
6 diff
(97.6 %id)
AU119996 whole embryo, mainly head .a 1055 to 1525 2 to 472   capped   471/471
(100 %)
7 diff
(98.6 %id)
R60088 whole brain .a 1074 to 1592 1 to 525       525/525
(100 %)
22 diff
(95.9 %id)
CD628189   .a 1077 to 1694 8 to 625       618/625
(98 %)
6 diff
(99.1 %id)
T27132   .a 1077 to 1463 13 to 399       387/399
(96 %)
6 diff
(98.5 %id)
BG324670 Kidney, renal cell adenocarcinoma .a 1080 to 1962 1 to 891       891/1126
(79 %)
75 diff
(93.4 %id)
BG421254 Kidney, renal cell adenocarcinoma .a 1080 to 1659 1 to 578       578/953
(60 %)
6 diff
(99.4 %id)
DA382811 thalamus .a 1217 to 1696 2 to 481   capped   480/480
(100 %)
1 diff
(99.8 %id)
BF341767 brain, glioblastoma with EGFR amplification .a 1336 to 2086 8 to 756       749/819
(91 %)
69 diff
(91.6 %id)
BE796363 lung, small cell carcinoma .a 1365 to 2225 1 to 854       854/897
(95 %)
18 diff
(98.0 %id)
BF337797 brain, glioblastoma with EGFR amplification .a 1379 to 2173 1 to 792       792/795
(99 %)
36 diff
(95.5 %id)
BM741808 stomach .a 1405 to 2048 1 to 644       644/644
(100 %)
0 diff
(100 %id)
BF525679 brain, glioblastoma with EGFR amplification .a 1539 to 2032 1 to 492       492/492
(100 %)
2 diff
(99.6 %id)
T51728 fetal spleen, Spleen .a 1594 to 1915 1 to 333       333/398
(83 %)
16 diff
(96.0 %id)
CF456943 peripheral nervous system .a 1603 to 2368 20 to 779       760/885
(85 %)
15 diff
(98.4 %id)
CD628188   .a 1607 to 1923 596 to 276       321/327
(98 %)
0 diff
(100 %id)
AA367598 placenta .a 1635 to 1951 317 to 1       317/317
(100 %)
3 diff
(99.1 %id)
AL570843 placenta, Placenta Cot 25-normalized .a 1644 to 2644 1000 to 1       1000/1000
(100 %)
13 diff
(98.7 %id)
AL570794 placenta, Placenta Cot 25-normalized .a 1671 to 2643 967 to 1       967/967
(100 %)
15 diff
(98.5 %id)
AA372030 pituitary gland .a 1678 to 2044 1 to 367       367/367
(100 %)
1 diff
(99.8 %id)
BF344220 brain, glioblastoma with EGFR amplification .a 1745 to 2032 29 to 316       288/316
(91 %)
6 diff
(98.2 %id)
BF998155 placenta_normal .a 1777 to 2073 300 to 5       296/301
(98 %)
0 diff
(100 %id)
BX434223 placenta .a 1784 to 2671 883 to 1       883/887
(99 %)
0 diff
(100 %id)
BF998146 placenta_normal .a 1834 to 2090 43 to 290       248/290
(85 %)
6 diff
(98.0 %id)
TI_149293328   .a 1912 to 2672 847 to 85   AAA   763/1002
(76 %)
11 diff
(99.0 %id)
DB465307 hippocampus .a 1925 to 2350 1 to 425       425/430
(98 %)
4 diff
(99.1 %id)
BM975075 lung .a 1963 to 2672 728 to 19   AAA   710/710
(100 %)
0 diff
(100 %id)
CA438256 lung, Metastatic Chondrosarcoma .a 2007 to 2673 687 to 19   AAA   669/669
(100 %)
3 diff
(99.6 %id)
BQ006616 Chondrosarcoma, Left Pelvis .a 2033 to 2673 661 to 19   AAA   643/650
(98 %)
3 diff
(99.6 %id)
BE855577 brain, glioblastoma (pooled) .a 2120 to 2674 555 to 1       555/555
(100 %)
3 diff
(99.5 %id)
DB358588 whole embryo, mainly head .a 2141 to 2665 533 to 9       525/550
(95 %)
0 diff
(100 %id)
CA444588 lung, Metastatic Chondrosarcoma .a 2184 to 2673 511 to 19   AAA   493/499
(98 %)
1 diff
(99.8 %id)
AA304416 aorta .a 2192 to 2517 1 to 332       332/334
(99 %)
9 diff
(97.4 %id)
AI871469 anaplastic oligodendroglioma, brain .a 2193 to 2673 482 to 1       482/482
(100 %)
1 diff
(99.8 %id)
R60026 whole brain .a 2195 to 2673 492 to 12   AAA   481/481
(100 %)
16 diff
(96.7 %id)
AY358657   .a 2207 to 2673 1 to 467   AAA   467/467
(100 %)
0 diff
(100 %id)
AA099445 uterus .a 2207 to 2448 1 to 241   fully sequenced,   241/241
(100 %)
2 diff
(99.2 %id)
AI149981   .a 2227 to 2674 450 to 3       448/450
(99 %)
0 diff
(100 %id)
AW015212   .a 2245 to 2673 449 to 18   AAA   432/432
(100 %)
1 diff
(99.8 %id)
BF222471 Kidney .a 2246 to 2672 428 to 1       428/428
(100 %)
1 diff
(99.8 %id)
AI493364 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 2248 to 2673 437 to 12   AAA   426/426
(100 %)
2 diff
(99.6 %id)
T27131   .a 2259 to 2673 414 to 1       414/414
(100 %)
5 diff
(98.8 %id)
BE463932 Kidney .a 2271 to 2674 406 to 3       404/406
(99 %)
0 diff
(100 %id)
AU156068 placenta .a 2271 to 2673 403 to 1       403/403
(100 %)
3 diff
(99.3 %id)
AA083737   .a 2283 to 2674 395 to 4       392/396
(98 %)
0 diff
(100 %id)
AW594286 pooled germ cell tumors .a 2293 to 2674 386 to 5       382/386
(98 %)
0 diff
(100 %id)
BQ024597 placenta .a 2336 to 2673 356 to 19   AAA   338/338
(100 %)
0 diff
(100 %id)
AA367347 placenta .a 2403 to 2673 271 to 1       271/271
(100 %)
0 diff
(100 %id)
AA101878 uterus .a 2418 to 2684 268 to 1   fully sequenced,   268/268
(100 %)
7 diff
(97.4 %id)
AL571908 placenta, Placenta Cot 25-normalized .a 2434 to 3075 642 to 1       642/737
(87 %)
3 diff
(99.6 %id)
BF589966 Kidney .a 2450 to 2674 229 to 5       225/229
(98 %)
0 diff
(100 %id)
BQ006379 Chondrosarcoma, Left Pelvis .a 2484 to 3222 743 to 17   AAA   727/728
(99 %)
14 diff
(98.1 %id)
DR980116 placenta .a 2524 to 2673 28 to 177   AAA Submitted on the opposite strand 150/177
(84 %)
6 diff
(96.7 %id)
BX118770 heart .a 2547 to 3074 1 to 528       528/528
(100 %)
1 diff
(99.9 %id)
AF086248   .a 2547 to 3134 1 to 588   AAA   588/588
(100 %)
0 diff
(100 %id)
W67823 heart .a 2547 to 3135 1 to 596       596/596
(100 %)
9 diff
(98.5 %id)
CR740036   .a 2555 to 3222 1 to 669   AAA   669/669
(100 %)
1 diff
(99.9 %id)
W91937 liver and spleen .a 2556 to 3066 1 to 509   fully sequenced,   509/509
(100 %)
3 diff
(99.5 %id)
AI871137 anaplastic oligodendroglioma, brain .a 2581 to 3136 557 to 2       556/557
(99 %)
0 diff
(100 %id)
BF114974 Kidney .a 2593 to 3029 544 to 107       438/544
(80 %)
0 diff
(100 %id)
BM994192 lung, Metastatic Chondrosarcoma .a 2597 to 3134 556 to 19   AAA   538/538
(100 %)
3 diff
(99.5 %id)
BM992527 lung, Metastatic Chondrosarcoma .a 2615 to 3222 624 to 17   tiling clone, AAA   608/624
(97 %)
0 diff
(100 %id)
AI932377 pooled .a 2662 to 3133 472 to 2       471/472
(99 %)
0 diff
(100 %id)
DB550390 hippocampus .a 2668 to 3136 1 to 469     Submitted on the opposite strand 469/469
(100 %)
0 diff
(100 %id)
BF593250 Kidney .a 2672 to 3132 462 to 2       461/462
(99 %)
0 diff
(100 %id)
T51938 fetal spleen, Spleen .a 2685 to 3134 462 to 1       462/463
(99 %)
12 diff
(97.5 %id)
BF939872 brain, glioblastoma (pooled) .a 2689 to 3217 529 to 1       529/529
(100 %)
0 diff
(100 %id)
DB531875 hippocampus .a 2703 to 3134 1 to 432     Submitted on the opposite strand 432/432
(100 %)
0 diff
(100 %id)
BE465845 Kidney .a 2727 to 3224 502 to 6   tiling clone,   497/502
(99 %)
0 diff
(100 %id)
W67638 heart .a 2743 to 3134 396 to 1       396/515
(76 %)
9 diff
(98.3 %id)
AA676726 liver and spleen .a 2787 to 3217 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AA680168 liver and spleen .a 2822 to 3217 396 to 1       396/397
(99 %)
0 diff
(100 %id)
AI419647 brain, glioblastoma (pooled) .a 2904 to 3130 227 to 1       227/227
(100 %)
0 diff
(100 %id)
W94900 liver and spleen .a 3036 to 3223 192 to 1   fully sequenced,   192/192
(100 %)
0 diff
(100 %id)
DA390361 thalamus .b 1 to 532 2 to 533 exact tiling clone, capped   532/532
(100 %)
1 diff
(99.9 %id)
CK819477 Islets of Langerhans, Pancreas .c 1 to 343 1 to 343 exact tiling clone, AAA   343/343
(100 %)
2 diff
(99.5 %id)
BX111905 Kidney .c 2 to 337 1 to 336 exact     336/336
(100 %)
0 diff
(100 %id)
BM129130 Islets of Langerhans, Pancreas .c 18 to 344 1 to 327       327/332
(98 %)
3 diff
(99.1 %id)
AI762422 Kidney .c 35 to 343 339 to 31   AAA   309/309
(100 %)
14 diff
(95.5 %id)
BF987641 placenta_normal .c 44 to 331 1 to 289       289/300
(96 %)
7 diff
(97.7 %id)
BF993285 placenta_normal .c 44 to 339 301 to 4       298/310
(96 %)
9 diff
(97.1 %id)
BM128869 Islets of Langerhans, Pancreas .c 47 to 344 299 to 2       298/299
(99 %)
0 diff
(100 %id)
BF431002 Kidney .c 60 to 340 284 to 4       281/284
(98 %)
0 diff
(100 %id)
AW611870 Kidney .c 89 to 344 258 to 3   tiling clone,   256/258
(99 %)
0 diff
(100 %id)
BF989299 placenta_normal .c 160 to 341 184 to 2       183/184
(99 %)
0 diff
(100 %id)
AI031859 brain, glioblastoma (pooled) Gene APLN, variant not shown         Suspected internal deletion, this clone was ignored    
BF939932 brain, glioblastoma (pooled) Gene APLN, variant not shown         Suspected internal deletion, this clone was ignored    
BF526056 brain, glioblastoma with EGFR amplification Gene APLN, variant not shown         Suspected internal deletion, this clone was ignored    
DA882096   Gene APLN, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA947430 Spleen Gene APLN, variant not shown       capped This clone was ignored    
DB333594 Spleen Gene APLN, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DI