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Gene API5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
437 supporting clones for gene API5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC308107 cerebellum .a 1 to 509 1 to 510       510/510
(100 %)
2 diff
(99.7 %id)
DC334531 hippocampus .a 1 to 552 1 to 552   tiling clone,   552/552
(100 %)
0 diff
(100 %id)
NM_001142930.1   .a 1 to 3768 1 to 3768 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3768/3768
(100 %)
1 diff
(100.0 %id)
DC401061 testis .a 1 to 535 1 to 536       536/536
(100 %)
2 diff
(99.7 %id)
DB444926 testis .a 4 to 442 1 to 439       439/439
(100 %)
0 diff
(100 %id)
DC400930 testis .a 7 to 544 1 to 539       539/539
(100 %)
1 diff
(99.9 %id)
DC423590 uterus .a 7 to 541 1 to 535       535/535
(100 %)
0 diff
(100 %id)
DC400666 testis .a 9 to 261 1 to 253       253/253
(100 %)
0 diff
(100 %id)
DC321003 brain .a 11 to 521 1 to 512       512/512
(100 %)
1 diff
(99.9 %id)
DC408968 thymus .a 11 to 553 1 to 544       544/544
(100 %)
1 diff
(99.9 %id)
DB099477 testis .a 12 to 607 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
BP283183 bone marrow .a 15 to 594 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
BM193468 leukopheresis .a 19 to 492 1 to 474       474/474
(100 %)
6 diff
(98.8 %id)
DB454647 testis .a 20 to 496 1 to 477       477/477
(100 %)
1 diff
(99.8 %id)
DC402169 testis .a 20 to 555 1 to 536       536/536
(100 %)
0 diff
(100 %id)
DA241046 brain .a 21 to 607 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DC333863 hippocampus .a 21 to 509 1 to 489       489/489
(100 %)
0 diff
(100 %id)
DA800603 brain .a 21 to 572 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BP337571 coronary artery .a 21 to 601 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DC401182 testis .a 21 to 551 1 to 532       532/532
(100 %)
1 diff
(99.9 %id)
DB079858 testis .a 21 to 597 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB217535 trachea .a 21 to 577 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DC333968 hippocampus .a 22 to 509 1 to 488       488/488
(100 %)
0 diff
(100 %id)
DA116700 cerebellum .a 23 to 616 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA391689 thalamus .a 23 to 606 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA858734 placenta .a 23 to 592 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB230889 trachea .a 23 to 612 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA097856 cerebellum .a 25 to 596 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA206049 brain .a 25 to 603 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA213415 brain .a 25 to 587 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA229606 brain .a 25 to 585 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA311416 hippocampus .a 25 to 578 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA326034 hippocampus .a 25 to 588 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB231889 trachea .a 32 to 629 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA114603 cerebellum .a 33 to 625 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA757643   .a 33 to 593 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB172408 kidney, tumor tissue .a 33 to 600 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB223073 trachea .a 33 to 602 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB234204 trachea .a 33 to 603 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
AK299288   .a 35 to 1902 1 to 1868 exact tiling clone,   1868/1868
(100 %)
0 diff
(100 %id)
BP228688 brain .a 35 to 617 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP234176 coronary artery .a 35 to 609 1 to 577       577/586
(98 %)
3 diff
(99.5 %id)
TI_154152757   .a 35 to 690 79 to 731       653/690
(94 %)
28 diff
(96.0 %id)
DA046830   .a 36 to 770 2 to 736   capped   735/745
(98 %)
2 diff
(99.8 %id)
DA100497 cerebellum .a 36 to 596 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA109021 cerebellum .a 36 to 630 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA117731 cerebellum .a 36 to 603 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA119749 cerebellum .a 36 to 590 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA125699 cerebellum .a 36 to 606 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA128021 cerebellum .a 36 to 627 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA128277 cerebellum .a 36 to 596 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA195916 amygdala .a 36 to 594 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA211816 brain .a 36 to 603 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA221553 brain .a 36 to 592 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA243154 brain .a 36 to 622 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA247572 brain .a 36 to 612 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA247921 brain .a 36 to 609 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA330061 hippocampus .a 36 to 597 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA333849 hippocampus .a 36 to 609 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA388152 thalamus .a 36 to 629 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DA398249 thalamus .a 36 to 595 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA403416 thalamus .a 36 to 592 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA406017 thalamus .a 36 to 604 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA408521 thalamus .a 36 to 596 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA414494 thalamus .a 36 to 594 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA428963 colon .a 36 to 606 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA444794 tongue, tumor tissue .a 36 to 611 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA461029 tongue, tumor tissue .a 36 to 595 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA714355   .a 36 to 590 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA723110   .a 36 to 612 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA725084   .a 36 to 596 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA755723   .a 36 to 606 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA862749 placenta .a 36 to 597 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB064602 testis .a 36 to 606 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB066851 testis .a 36 to 608 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB071769 testis .a 36 to 588 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB091615 testis .a 36 to 593 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB163482 thymus .a 36 to 601 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB215812 trachea .a 36 to 597 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB220193 trachea .a 36 to 610 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB220678 trachea .a 36 to 611 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB225128 trachea .a 36 to 614 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB226051 trachea .a 36 to 619 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DB235196 trachea .a 36 to 607 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB241463 trachea .a 36 to 630 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DB288679 uterus .a 36 to 598 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB290389 uterus .a 36 to 606 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB291086 uterus .a 36 to 603 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB291136 uterus .a 36 to 603 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB292154 uterus .a 36 to 595 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA230245 brain .a 38 to 597 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA247139 brain .a 38 to 628 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA510355 brain .a 40 to 616 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB077773 testis .a 40 to 605 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB229175 trachea .a 40 to 625 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DB234294 trachea .a 40 to 599 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA322570 hippocampus .a 42 to 593 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA093659 cerebellum .a 43 to 608 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA117709 cerebellum .a 43 to 604 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA190556 amygdala .a 43 to 619 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA191238 amygdala .a 43 to 608 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA236502 brain .a 43 to 616 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA246969 brain .a 43 to 600 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA440551 tongue, tumor tissue .a 43 to 617 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA441400 tongue, tumor tissue .a 43 to 628 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA452150 tongue, tumor tissue .a 43 to 600 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA632902 Kidney .a 43 to 617 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA659779   .a 43 to 622 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA744058   .a 43 to 605 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA794618 brain .a 43 to 609 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA811085 brain .a 43 to 618 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB068721 testis .a 43 to 596 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB082694 testis .a 43 to 595 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DB154233 thymus .a 43 to 612 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB219479 trachea .a 43 to 603 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DB288569 uterus .a 43 to 600 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
CV803701 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 44 to 721 1 to 670       670/827
(81 %)
13 diff
(98.5 %id)
DA190668 amygdala .a 45 to 622 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA235640 brain .a 45 to 644 2 to 601   capped   600/600
(100 %)
0 diff
(100 %id)
DA322264 hippocampus .a 45 to 598 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA329114 hippocampus .a 45 to 694 2 to 651   capped   650/650
(100 %)
0 diff
(100 %id)
DA332655 hippocampus .a 45 to 631 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA417383 thalamus .a 45 to 602 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB082525 testis .a 45 to 602 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB220616 trachea .a 45 to 611 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB229206 trachea .a 45 to 647 2 to 604   capped   603/603
(100 %)
0 diff
(100 %id)
DB231360 trachea .a 45 to 612 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB235871 trachea .a 45 to 612 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA458810 tongue, tumor tissue .a 46 to 609 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
AA430993   .a 47 to 419 1 to 385       385/385
(100 %)
22 diff
(94.3 %id)
DA992915 synovial membrane tissue from rheumatioidarthritis .a 49 to 630 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
CN340877 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 51 to 772 1 to 724       724/734
(98 %)
3 diff
(99.6 %id)
DA102237 cerebellum .a 52 to 639 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA157824 amygdala .a 55 to 625 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA413778 thalamus .a 55 to 606 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BP365086 lung .a 55 to 635 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA095722 cerebellum .a 56 to 612 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BM453545 leiomyosarcoma, uterus .a 58 to 784 1 to 734       734/960
(76 %)
14 diff
(98.6 %id)
DB236765 trachea .a 58 to 641 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
BP233842 coronary artery .a 60 to 655 1 to 596       596/596
(100 %)
0 diff
(100 %id)
DA554917   .a 61 to 616 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB461136 testis .a 63 to 538 1 to 476       476/476
(100 %)
1 diff
(99.8 %id)
TI_57244402   .a 63 to 760 30 to 730       701/731
(95 %)
14 diff
(98.1 %id)
DB213165 trachea .a 64 to 624 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
BQ069172 brain, neuroblastoma, cell line .a 70 to 923 1 to 855       855/960
(89 %)
8 diff
(99.2 %id)
TI_57200476   .a 70 to 914 25 to 878       854/878
(97 %)
20 diff
(97.8 %id)
DA723111   .a 73 to 651 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB219344 trachea .a 74 to 628 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BP270916 small intestine .a 76 to 676 1 to 601       601/603
(99 %)
1 diff
(99.9 %id)
DA858593 placenta .a 77 to 665 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA193535 amygdala .a 79 to 651 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB225166 trachea .a 79 to 665 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
BP233819 coronary artery .a 81 to 663 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA232336 brain .a 82 to 641 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA335382 hippocampus .a 83 to 672 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
CN340879 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 91 to 681 1 to 591       591/591
(100 %)
0 diff
(100 %id)
BP277702   .a 91 to 672 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA403156 thalamus .a 94 to 648 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
CN340878 embryonic stem cells, DMSO-treated H9 cellline .a 104 to 764 1 to 661       661/661
(100 %)
0 diff
(100 %id)
AU130361   .a 105 to 874 2 to 772   capped   771/771
(100 %)
4 diff
(99.5 %id)
CN340900 embryonic stem cells, cell lines H1, H7, andH9 .a 106 to 798 1 to 694       694/694
(100 %)
3 diff
(99.6 %id)
TI_154152395   .a 112 to 619 81 to 588       508/549
(92 %)
18 diff
(96.8 %id)
TI_154161878   .a 112 to 673 72 to 634       563/564
(99 %)
11 diff
(98.1 %id)
TI_154167472   .a 112 to 585 79 to 552       474/476
(99 %)
12 diff
(97.5 %id)
TI_154153473   .a 145 to 759 80 to 694       615/616
(99 %)
15 diff
(97.6 %id)
AU152332   .a 3218 to 3768 549 to 1   tiling clone,   549/549
(100 %)
5 diff
(99.1 %id)
NR_024625.1   .b 1 to 3830 1 to 3830 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3830/3830
(100 %)
1 diff
(100.0 %id)
DC423851 uterus .b 24 to 589 1 to 566       566/566
(100 %)
0 diff
(100 %id)
AK304157 trachea .b 35 to 2280 1 to 2246 exact     2246/2246
(100 %)
0 diff
(100 %id)
DC306792 cerebellum .b 35 to 583 1 to 549       549/549
(100 %)
0 diff
(100 %id)
DC309550 cerebellum .b 35 to 615 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DC333712 hippocampus .b 35 to 627 1 to 597       597/604
(98 %)
5 diff
(99.2 %id)
DC335814 hippocampus .b 35 to 619 1 to 586       586/586
(100 %)
2 diff
(99.7 %id)
DC414185 trachea .b 35 to 609 1 to 575       575/575
(100 %)
2 diff
(99.7 %id)
DC415796 trachea .b 35 to 466 1 to 433       433/442
(97 %)
2 diff
(99.6 %id)
DC416340 trachea .b 35 to 584 1 to 553       553/553
(100 %)
4 diff
(99.3 %id)
DC416512 trachea .b 35 to 612 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DC401496 testis .b 42 to 594 1 to 553       553/553
(100 %)
0 diff
(100 %id)
DC417519 trachea .b 42 to 627 1 to 586       586/586
(100 %)
0 diff
(100 %id)
DC423666 uterus .b 42 to 617 1 to 576       576/576
(100 %)
0 diff
(100 %id)
CD243789 testis .b 43 to 822 1 to 788       788/858
(91 %)
13 diff
(98.5 %id)
DC416862 trachea .b 44 to 629 1 to 588       588/588
(100 %)
2 diff
(99.7 %id)
CF138429 lymph .b 55 to 482 1 to 428       428/428
(100 %)
5 diff
(98.9 %id)
TI_154168351   .b 60 to 597 77 to 614       538/538
(100 %)
4 diff
(99.3 %id)
DC404208 testis .b 78 to 681 1 to 604       604/604
(100 %)
1 diff
(99.9 %id)
DC325081 brain .b 81 to 673 1 to 593       593/593
(100 %)
0 diff
(100 %id)
DA446142 tongue, tumor tissue .b 307 to 868 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
TI_154160239   .b 338 to 892 85 to 639       555/557
(99 %)
1 diff
(99.9 %id)
BG387747 embryonal carcinoma, cell line, testis .b 339 to 1068 1 to 724       724/967
(74 %)
10 diff
(99.0 %id)
BF882185 lung_tumor .b 359 to 792 434 to 1     Submitted on the opposite strand 434/434
(100 %)
2 diff
(99.6 %id)
TI_154165385   .b 361 to 941 81 to 663       583/873
(66 %)
13 diff
(98.6 %id)
CR739855   .b 446 to 924 480 to 1     Submitted on the opposite strand 480/480
(100 %)
2 diff
(99.6 %id)
H19197 brain .b 460 to 956 510 to 3     Submitted on the opposite strand 508/524
(96 %)
22 diff
(95.9 %id)
R15915 whole brain .b 463 to 928 475 to 1     Submitted on the opposite strand 475/532
(89 %)
15 diff
(97.2 %id)
R51488 whole brain .b 467 to 692 233 to 1     Submitted on the opposite strand 233/256
(91 %)
10 diff
(96.1 %id)
H19275 brain .b 469 to 921 460 to 1     Submitted on the opposite strand 460/470
(97 %)
9 diff
(98.1 %id)
H23066 whole brain .b 487 to 957 481 to 1     Submitted on the opposite strand 481/481
(100 %)
17 diff
(96.5 %id)
TI_154165288   .b 488 to 1014 79 to 605       527/527
(100 %)
1 diff
(99.9 %id)
R51764 whole brain .b 494 to 957 475 to 1     Submitted on the opposite strand 475/478
(99 %)
18 diff
(96.3 %id)
R51746 whole brain .b 494 to 957 470 to 1     Submitted on the opposite strand 467/473
(98 %)
10 diff
(97.9 %id)
H14730 whole brain .b 494 to 951 467 to 1     Submitted on the opposite strand 467/469
(99 %)
17 diff
(96.4 %id)
H09887 whole brain .b 497 to 957 472 to 1     Submitted on the opposite strand 472/527
(89 %)
15 diff
(97.2 %id)
H29162 whole brain .b 506 to 956 462 to 1     Submitted on the opposite strand 462/490
(94 %)
16 diff
(96.8 %id)
R56193 whole brain .b 513 to 955 446 to 4     Submitted on the opposite strand 443/471
(94 %)
2 diff
(99.6 %id)
R19856 whole brain .b 518 to 956 443 to 1     Submitted on the opposite strand 443/444
(99 %)
5 diff
(98.9 %id)
T65512 whole brain .b 524 to 931 418 to 1     Submitted on the opposite strand 418/427
(97 %)
12 diff
(97.2 %id)
R25278 whole brain .b 531 to 955 434 to 4     Submitted on the opposite strand 431/438
(98 %)
8 diff
(98.2 %id)
R61148 whole brain .b 531 to 957 431 to 1     Submitted on the opposite strand 431/433
(99 %)
7 diff
(98.4 %id)
H25187 whole brain .b 535 to 957 428 to 1     Submitted on the opposite strand 428/443
(96 %)
5 diff
(98.9 %id)
H20619 whole brain .b 536 to 955 425 to 4     Submitted on the opposite strand 422/436
(96 %)
2 diff
(99.6 %id)
R23559 whole brain .b 537 to 957 424 to 2     Submitted on the opposite strand 423/424
(99 %)
3 diff
(99.3 %id)
T78352 whole brain .b 557 to 932 379 to 1     Submitted on the opposite strand 379/469
(80 %)
6 diff
(98.8 %id)
R13028 whole brain .b 557 to 957 406 to 1     Submitted on the opposite strand 406/486
(83 %)
6 diff
(98.8 %id)
R14210 whole brain .b 557 to 953 405 to 2     Submitted on the opposite strand 404/593
(68 %)
8 diff
(98.7 %id)
R14649 whole brain .b 557 to 957 407 to 1     Submitted on the opposite strand 407/432
(94 %)
7 diff
(98.4 %id)
H13009 whole brain .b 557 to 955 406 to 3     Submitted on the opposite strand 404/417
(96 %)
5 diff
(98.9 %id)
H20895 whole brain .b 557 to 957 411 to 1     Submitted on the opposite strand 411/422
(97 %)
12 diff
(97.2 %id)
R51747 whole brain .b 558 to 956 402 to 2     Submitted on the opposite strand 401/511
(78 %)
5 diff
(99.1 %id)
H20647 whole brain .b 558 to 953 405 to 7     Submitted on the opposite strand 399/471
(84 %)
3 diff
(99.4 %id)
H10634 whole brain .b 565 to 957 398 to 1     Submitted on the opposite strand 398/400
(99 %)
10 diff
(97.5 %id)
DA169932 amygdala .b 566 to 1129 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
R35602 whole brain .b 567 to 952 406 to 9     Submitted on the opposite strand 398/437
(91 %)
12 diff
(97.3 %id)
R12153 whole brain .b 570 to 878 315 to 1     Submitted on the opposite strand 315/318
(99 %)
8 diff
(97.5 %id)
R52748 whole brain .b 570 to 955 393 to 4     Submitted on the opposite strand 390/444
(87 %)
4 diff
(99.1 %id)
Z44426 brain, total brain .b 571 to 959 389 to 1       389/389
(100 %)
0 diff
(100 %id)
R13294 whole brain .b 580 to 957 386 to 1     Submitted on the opposite strand 386/494
(78 %)
10 diff
(98.0 %id)
R19639 whole brain .b 580 to 957 387 to 1     Submitted on the opposite strand 385/390
(98 %)
16 diff
(95.9 %id)
T65076 whole brain .b 594 to 930 345 to 1     Submitted on the opposite strand 345/385
(89 %)
9 diff
(97.7 %id)
R14048 whole brain .b 594 to 955 371 to 3     Submitted on the opposite strand 367/386
(95 %)
8 diff
(98.0 %id)
R14315 whole brain .b 594 to 955 373 to 3     Submitted on the opposite strand 369/447
(82 %)
13 diff
(97.1 %id)
R17949 whole brain .b 594 to 953 368 to 4     Submitted on the opposite strand 363/390
(93 %)
9 diff
(97.7 %id)
R20355 whole brain .b 594 to 956 373 to 2     Submitted on the opposite strand 370/389
(95 %)
14 diff
(96.5 %id)
DA126754 cerebellum .b 598 to 1180 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
CR740614   .b 598 to 924 328 to 1     Submitted on the opposite strand 328/328
(100 %)
2 diff
(99.4 %id)
CD622967   .b 607 to 939 343 to 11       333/350
(95 %)
0 diff
(100 %id)
TI_154166016   .b 620 to 1117 80 to 577       498/498
(100 %)
11 diff
(97.8 %id)
R20003 whole brain .b 625 to 951 329 to 1     Submitted on the opposite strand 329/430
(76 %)
2 diff
(99.6 %id)
R24820 whole brain .b 626 to 955 337 to 4     Submitted on the opposite strand 334/360
(92 %)
7 diff
(98.1 %id)
T10251   .b 634 to 960 349 to 15     Submitted on the opposite strand 335/349
(95 %)
9 diff
(97.5 %id)
H19444 whole brain .b 656 to 954 304 to 1     Submitted on the opposite strand 304/308
(98 %)
10 diff
(96.8 %id)
F15211 brain, total brain .b 666 to 957 292 to 2       291/292
(99 %)
0 diff
(100 %id)
DA389296 thalamus .b 724 to 1293 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
F15212 brain, total brain .b 781 to 936 166 to 16       151/166
(90 %)
0 diff
(100 %id)
BY996568   .b 809 to 1442 17 to 652       636/652
(97 %)
6 diff
(99.1 %id)
AL135672 melanoma (MeWo cell line) .b 910 to 1430 1 to 521       521/522
(99 %)
2 diff
(99.7 %id)
DA172693 amygdala .b 911 to 1468 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
AU279777   .b 917 to 1480 1 to 564       564/564
(100 %)
0 diff
(100 %id)
BX482542   .b 936 to 1440 1 to 506       506/506
(100 %)
22 diff
(95.7 %id)
DA783899 brain .b 948 to 1531 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
CX871745 embryonic stem .b 986 to 1732 1 to 746       746/746
(100 %)
1 diff
(99.9 %id)
EC511098 Prostate .b 1060 to 1167 108 to 4       105/110
(95 %)
0 diff
(100 %id)
AU129975   .b 1144 to 1965 2 to 823   capped   822/822
(100 %)
8 diff
(99.1 %id)
DA781172 brain .b 1146 to 1727 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
BF954194 nervous_normal .b 1180 to 1691 512 to 4       509/534
(95 %)
2 diff
(99.7 %id)
BP221891   .b 1276 to 1856 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP289598 lung .b 1277 to 1858 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DC378528   .b 1281 to 1848 1 to 568       568/568
(100 %)
0 diff
(100 %id)
DC412706 kidney, tumor tissue .b 1293 to 1860 1 to 570       570/570
(100 %)
2 diff
(99.7 %id)
BP220063 colon .b 1311 to 1883 1 to 574       574/577
(99 %)
10 diff
(98.3 %id)
DC374028 brain .b 1313 to 1838 10 to 535       526/526
(100 %)
1 diff
(99.9 %id)
BP265534 thyroid .b 1410 to 1984 1 to 575       575/575
(100 %)
2 diff
(99.7 %id)
CN340883 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1427 to 2168 9 to 749       741/751
(98 %)
8 diff
(99.0 %id)
DC393709 colon, tumor tissue .b 1489 to 2036 1 to 548       548/548
(100 %)
0 diff
(100 %id)
BF212397 bone marrow, from chronic myelogenous leukemia .b 1498 to 2084 1 to 597       597/830
(71 %)
30 diff
(96.4 %id)
AU131416   .b 1501 to 2338 2 to 837   capped   836/840
(99 %)
12 diff
(98.6 %id)
BM464512 leiomyosarcoma, uterus .b 1517 to 2267 1 to 756       756/937
(80 %)
16 diff
(98.3 %id)
AI214375   .b 1538 to 2012 477 to 6       472/477
(98 %)
3 diff
(99.4 %id)
AA323806 brain, cerebellum .b 1544 to 1889 1 to 348       348/348
(100 %)
2 diff
(99.5 %id)
BF149212 skin .b 1573 to 1944 1 to 372       372/372
(100 %)
1 diff
(99.8 %id)
AW955172   .b 1590 to 2168 46 to 628       583/630
(92 %)
22 diff
(96.6 %id)
AU129337   .b 1614 to 2304 2 to 697   capped   696/698
(99 %)
16 diff
(97.8 %id)
AU125893   .b 1616 to 2459 2 to 846   capped   845/850
(99 %)
6 diff
(99.3 %id)
DC406903 thymus .b 1637 to 1999 1 to 363       363/363
(100 %)
0 diff
(100 %id)
DC424270.
matches multiple genes
  .b 1667 to 2457 1 to 796     also hits gene LOC728664 796/843
(94 %)
19 diff
(97.8 %id)
BM802179 duodenal adenocarcinoma, cell line, small intestine .b 1684 to 2527 1 to 852       852/985
(86 %)
22 diff
(97.8 %id)
DR759683 embryonic stem .b 1719 to 2499 2 to 782       781/782
(99 %)
5 diff
(99.4 %id)
BG114536 Bone, osteosarcoma, cell line .b 1755 to 2381 1 to 628       628/760
(82 %)
4 diff
(99.5 %id)
AA101558 brain, neuroepithelial cells .b 1773 to 2168 1 to 397       397/397
(100 %)
1 diff
(99.8 %id)
BM836841 Ascites, stomach .b 1791 to 2402 1 to 612       612/612
(100 %)
0 diff
(100 %id)
TI_57233297   .b 1809 to 2524 53 to 766       714/766
(93 %)
6 diff
(99.3 %id)
DA751544   .b 1813 to 2377 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
CX787135 human embryonic stem cells .b 1843 to 2547 1 to 703       703/703
(100 %)
1 diff
(99.9 %id)
DA069764 cerebellum .b 1846 to 2404 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BP292742 lung .b 1865 to 2445 1 to 581       581/581
(100 %)
0 diff
(100 %id)
CX866122 embryonic stem .b 1972 to 2608 1 to 636     Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 636/636
(100 %)
1 diff
(99.9 %id)
CN478884 Human Lung Epithelial cells, lung .b 2019 to 2734 732 to 17   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 716/716
(100 %)
0 diff
(100 %id)
TI_154106569   .b 2022 to 2734 797 to 84   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 714/714
(100 %)
2 diff
(99.8 %id)
BP209746 cerebellum .b 2039 to 2620 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AI675626 Prostate .b 2174 to 2734 561 to 1       561/561
(100 %)
0 diff
(100 %id)
AU136080 placenta .b 2234 to 3015 2 to 788   capped   787/846
(93 %)
10 diff
(98.9 %id)
BP338460 Spleen .b 2249 to 2831 1 to 583       583/583
(100 %)
0 diff
(100 %id)
CR598402 Placenta Cot 25-normalized .b 2264 to 3794 1 to 1531       1531/1531
(100 %)
0 diff
(100 %id)
DB526553 testis .b 2280 to 2732 1 to 453     Submitted on the opposite strand 453/453
(100 %)
0 diff
(100 %id)
BP340391 Spleen .b 2302 to 2882 1 to 581       581/581
(100 %)
0 diff
(100 %id)
TI_57216053   .b 2371 to 3083 29 to 735       707/793
(89 %)
24 diff
(97.0 %id)
TI_57216054   .b 2373 to 3166 29 to 816       788/825
(95 %)
6 diff
(99.3 %id)
TI_57216060   .b 2373 to 3073 30 to 728       699/728
(96 %)
6 diff
(99.2 %id)
TI_57216131   .b 2373 to 3144 108 to 891       784/891
(87 %)
62 diff
(93.1 %id)
TI_57215906   .b 2380 to 3112 25 to 756       732/756
(96 %)
8 diff
(99.0 %id)
CR593210 T cells (Jurkat cell line) Cot10-normalized .b 2420 to 3825 1 to 1406   tiling clone,   1406/1406
(100 %)
0 diff
(100 %id)
AU123721   .b 2433 to 3185 2 to 754   capped   753/756
(99 %)
4 diff
(99.5 %id)
AW935506 denis_drash .b 2475 to 3041 588 to 19     Submitted on the opposite strand 570/603
(94 %)
0 diff
(100 %id)
DN916016   .b 2760 to 3401 634 to 1       634/635
(99 %)
15 diff
(97.7 %id)
TI_149297370   .b 2827 to 3830 1059 to 85   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 975/981
(99 %)
39 diff
(96.1 %id)
TI_149296182   .b 2975 to 3823 914 to 84   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 831/949
(87 %)
22 diff
(97.7 %id)
TI_154115104   .b 2990 to 3823 920 to 103   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 818/944
(86 %)
16 diff
(98.4 %id)
TI_149303302   .b 3019 to 3829 885 to 83   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 803/945
(84 %)
17 diff
(98.3 %id)
TI_149314188   .b 3019 to 3828 894 to 91   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 804/972
(82 %)
15 diff
(98.5 %id)
BQ374562 testis_normal .b 3051 to 3318 277 to 8       270/279
(96 %)
0 diff
(100 %id)
CA448977 Chondrosarcoma, Left Pelvis .b 3062 to 3823 776 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 758/758
(100 %)
5 diff
(99.4 %id)
BF801341 colon_ins .b 3075 to 3466 403 to 12     Submitted on the opposite strand 392/403
(97 %)
0 diff
(100 %id)
BU634498 cell lines, Chondrosarcoma .b 3112 to 3829 735 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 717/717
(100 %)
1 diff
(99.9 %id)
BU684186 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 3121 to 3823 720 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 702/702
(100 %)
1 diff
(99.9 %id)
CA430703 cell lines, Chondrosarcoma .b 3122 to 3829 726 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 708/708
(100 %)
0 diff
(100 %id)
CU447368 epidermis .b 3146 to 3793 664 to 17     Submitted on the opposite strand 648/664
(97 %)
0 diff
(100 %id)
BM789567 stomach .b 3159 to 3733 1 to 575       575/575
(100 %)
0 diff
(100 %id)
DA571460 whole embryo, mainly head .b 3166 to 3823 2 to 659   fully sequenced, capped   658/658
(100 %)
0 diff
(100 %id)
TI_159703853   .b 3168 to 3829 678 to 15   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 664/960
(69 %)
47 diff
(95.2 %id)
BM981337 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 3186 to 3829 662 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 644/644
(100 %)
0 diff
(100 %id)
CB250393 Human Lung Epithelial cells, lung .b 3187 to 3829 661 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 643/653
(98 %)
1 diff
(99.9 %id)
BM712270 eye, lens .b 3191 to 3765 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
CB321614 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 3227 to 3828 620 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 602/602
(100 %)
0 diff
(100 %id)
AU149462   .b 3255 to 3829 568 to 1       568/568
(100 %)
16 diff
(97.2 %id)
AU151488   .b 3262 to 3823 555 to 1       555/565
(98 %)
16 diff
(97.2 %id)
CX866040 embryonic stem .b 3264 to 3829 590 to 25   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 566/566
(100 %)
0 diff
(100 %id)
TI_154133359   .b 3265 to 3823 653 to 92   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 562/988
(56 %)
9 diff
(99.1 %id)
AW886727 ovary .b 3268 to 3483 213 to 2       212/217
(97 %)
0 diff
(100 %id)
AU152032   .b 3277 to 3829 551 to 1       551/551
(100 %)
15 diff
(97.3 %id)
TI_151697179   .b 3283 to 3821 650 to 114       537/1158
(46 %)
0 diff
(100 %id)
AU153152   .b 3306 to 3823 519 to 1       519/529
(98 %)
11 diff
(98.0 %id)
BM054749 Islets of Langerhans, Pancreas .b 3357 to 3829 487 to 15   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 473/473
(100 %)
0 diff
(100 %id)
DB520060 testis .b 3375 to 3823 1 to 449     Submitted on the opposite strand 449/449
(100 %)
0 diff
(100 %id)
AA101559 brain, neuroepithelial cells .b 3390 to 3828 439 to 1       439/440
(99 %)
0 diff
(100 %id)
AU156468 placenta .b 3398 to 3823 426 to 1       426/428
(99 %)
3 diff
(99.3 %id)
CK904611 Islets of Langerhans, Pancreas .b 3404 to 3830 440 to 14   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 427/427
(100 %)
1 diff
(99.8 %id)
DB509898 testis .b 3407 to 3830 1 to 427     Submitted on the opposite strand 427/427
(100 %)
3 diff
(99.3 %id)
AW977289   .b 3414 to 3828 415 to 1     Submitted on the opposite strand 415/418
(99 %)
26 diff
(93.8 %id)
BM151097 leukopheresis .b 3425 to 3828 421 to 18   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 404/405
(99 %)
0 diff
(100 %id)
AV739039 cord Blood .b 3536 to 3829 70 to 366   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 297/366
(81 %)
6 diff
(98.4 %id)
BQ102306 Islets of Langerhans, Pancreas .b 3568 to 3822 255 to 1       255/266
(95 %)
1 diff
(99.7 %id)
DB358316 whole embryo, mainly head .b 3619 to 3823 202 to 1   fully sequenced,   202/202
(100 %)
0 diff
(100 %id)
AI569127 adenocarcinoma, Pancreas .b 3629 to 3828 211 to 12   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 200/200
(100 %)
0 diff
(100 %id)
EC471159 Prostate .b 3704 to 3829 127 to 2       126/127
(99 %)
0 diff
(100 %id)
NM_006595.3   .c 1 to 3763 1 to 3763 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3763/3763
(100 %)
1 diff
(100.0 %id)
Y15906   .c 49 to 3762 8 to 3721 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3714/3721
(99 %)
7 diff
(99.9 %id)
AF229254 Liver .c 61 to 1877 1 to 1817 exact     1817/1817
(100 %)
0 diff
(100 %id)
AY311389   .c 62 to 3762 1 to 3701 exact AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3701/3701
(100 %)
1 diff
(100.0 %id)
U83857   .c 79 to 3728 1 to 3650 K371H D372E F373S D476M A477P ...     3620/3650
(99 %)
89 diff
(97.6 %id)
BT007093   .c 174 to 1688 1 to 1515 exact     1515/1515
(100 %)
0 diff
(100 %id)
BM725047 eye, fetal eye .d 1 to 684 1 to 684   tiling clone, Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 684/684
(100 %)
2 diff
(99.8 %id)
AF229253   .d 106 to 1618 1 to 1513   tiling clone,   1513/1516
(99 %)
1 diff
(100.0 %id)
AU116831 whole embryo, mainly head .d 794 to 1640 2 to 843   tiling clone, capped   842/906
(92 %)
16 diff
(98.3 %id)
AI832124 colon, colon tumor, RER+ .d 898 to 1613 728 to 13   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 716/716
(100 %)
19 diff
(97.4 %id)
BM680253 eye, fetal eye .d 901 to 1609 724 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 706/706
(100 %)
3 diff
(99.6 %id)
BF590674 colon, colon tumor, RER+ .d 1063 to 1612 551 to 2       550/551
(99 %)
0 diff
(100 %id)
BE501961 Kidney .d 1069 to 1613 560 to 16   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 545/545
(100 %)
0 diff
(100 %id)
AI280347 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1078 to 1610 534 to 1       534/534
(100 %)
5 diff
(99.1 %id)
BQ277075 mixed (pool of 40 RNAs) .d 1117 to 1615 1 to 499       499/531
(93 %)
8 diff
(98.5 %id)
AA779764   .d 1121 to 1528 408 to 1       408/408
(100 %)
1 diff
(99.8 %id)
AA846142 parathyroid gland, parathyroid tumor .d 1147 to 1618 474 to 3       472/474
(99 %)
1 diff
(99.8 %id)
BM987862 mixed .d 1180 to 1611 452 to 21   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 432/434
(99 %)
0 diff
(100 %id)
AA479872 ovarian tumor, ovary .d 1364 to 1603 1 to 240       240/240
(100 %)
0 diff
(100 %id)
DB354491 whole embryo, mainly head .d 1900 to 2397 499 to 1   tiling clone,   499/530
(94 %)
10 diff
(98.2 %id)
NM_001142931.1   .e 1 to 3601 1 to 3601 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 3601/3601
(100 %)
1 diff
(100.0 %id)
AK294724 brain .e 44 to 2052 1 to 2009 exact tiling clone,   2009/2009
(100 %)
0 diff
(100 %id)
DC320709 brain .e 44 to 591 1 to 548       548/548
(100 %)
0 diff
(100 %id)
BM460015 leiomyosarcoma, uterus .e 948 to 1906 1 to 967       967/1062
(91 %)
20 diff
(98.2 %id)
TI_57229866   .e 956 to 1742 64 to 851       788/805
(97 %)
17 diff
(97.9 %id)
CN340891 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 987 to 1675 1 to 690       690/690
(100 %)
1 diff
(99.9 %id)
DA632890 Kidney .e 1077 to 1659 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA257716 caudate nucleus .e 1259 to 1836 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
TI_44345135   .e 1289 to 2117 121 to 953   tiling clone,   833/956
(87 %)
34 diff
(96.5 %id)
DB126942 thymus .e 1337 to 1937 2 to 602   capped   601/601
(100 %)
0 diff
(100 %id)
BM453758 melanotic melanoma, skin .e 1454 to 2277 1 to 828   tiling clone,   828/881
(93 %)
23 diff
(97.4 %id)
H19374 whole brain .f 1 to 420 422 to 1   tiling clone, Submitted on the opposite strand 422/434
(97 %)
10 diff
(97.7 %id)
BU194086 melanotic melanoma, skin .f 149 to 1024 1 to 882   tiling clone,   882/886
(99 %)
10 diff
(98.9 %id)
AL708691 human skeletal muscle .f 873 to 1218 1 to 346   tiling clone,   346/346
(100 %)
0 diff
(100 %id)
BX350148 Placenta Cot 25-normalized .g 1 to 923 923 to 2 F3L K4S H5I F39X Q54X tiling clone,   922/926
(99 %)
2 diff
(99.8 %id)
BX380669 Placenta Cot 25-normalized .g 638 to 1677 1029 to 1   tiling clone,   1029/1032
(99 %)
23 diff
(97.8 %id)
AW083788 colon, moderately differentiated adenocarcinoma .g 1200 to 1707 533 to 26   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 508/508
(100 %)
3 diff
(99.5 %id)
AA291360 ovarian tumor, ovary .g 1511 to 1936 1 to 425   tiling clone,   425/425
(100 %)
1 diff
(99.8 %id)
AL598134   .g 1839 to 2287 1 to 449   tiling clone,   449/451
(99 %)
1 diff
(99.8 %id)
AW368128 head_neck .h 1 to 480 1 to 480   tiling clone,   480/480
(100 %)
2 diff
(99.6 %id)
CN340899 embryonic stem cells, DMSO-treated H9 cellline .h 111 to 883 9 to 781 exact tiling clone,   773/781
(98 %)
6 diff
(99.3 %id)
DB129695 thymus .i 1 to 552 2 to 553 exact tiling clone, capped   552/552
(100 %)
0 diff
(100 %id)
W40304 Pancreas, pancreatic islet .j 1 to 337 1 to 338 exact tiling clone,   338/345
(97 %)
3 diff
(99.2 %id)
BF590304 pooled .j 280 to 492 224 to 12   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 213/213
(100 %)
1 diff
(99.6 %id)
BX100681 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 313 to 782 1 to 470   tiling clone,   470/470
(100 %)
0 diff
(100 %id)
AI379120 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 474 to 919 446 to 1       446/446
(100 %)
0 diff
(100 %id)
BF674197 Prostate .j 513 to 1258 1 to 755       755/823
(91 %)
20 diff
(97.6 %id)
AI399760 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 529 to 919 391 to 1       391/391
(100 %)
0 diff
(100 %id)
TI_154005741   .j 724 to 1313 643 to 55   tiling clone,   589/644
(91 %)
12 diff
(98.2 %id)
W45336 Pancreas, pancreatic islet .j 862 to 1288 432 to 1   tiling clone,   432/456
(94 %)
16 diff
(96.5 %id)
CA434056 Bone, Subchondral Bone .j 870 to 1298 429 to 1   tiling clone,   429/429
(100 %)
4 diff
(99.1 %id)
DB137119 thymus .k-u 1 to 537 2 to 538   tiling clone, to resequence, capped   537/537
(100 %)
2 diff
(99.7 %id)
AU118066 whole embryo, mainly head .k-u 1249 to 2047 2 to 800   tiling clone, capped   799/801
(99 %)
3 diff
(99.7 %id)
AA778847 liver and spleen .k-u 1322 to 1802 481 to 1       481/481
(100 %)
0 diff
(100 %id)
DA571057.
matches multiple genes
whole embryo, mainly head .k-u 1365 to 1956 2 to 593   tiling clone, capped also hits gene AEBP1 592/798
(74 %)
7 diff
(99.2 %id)
DB176841 kidney, tumor tissue .k-u 1380 to 1923 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
AI042193 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .k-u 1387 to 1803 417 to 1       417/417
(100 %)
0 diff
(100 %id)
BU155951 melanotic melanoma, skin .k-u 1419 to 2242 1 to 827       827/878
(94 %)
17 diff
(98.1 %id)
BC015898 Uterus, leiomyosarcoma .k-u 1443 to 4343 1 to 2899 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 2899/2899
(100 %)
4 diff
(99.9 %id)
DA386851 thalamus .k-u 1451 to 2037 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
BE882903 leiomyosarcoma, uterus .k-u 1464 to 2079 1 to 610   available from MGC,   610/908
(67 %)
31 diff
(96.6 %id)
AL134350 brain .k-u 1484 to 2068 1 to 586       586/586
(100 %)
5 diff
(99.2 %id)
AA332175 Embryo, 8 weeks .k-u 1534 to 1752 1 to 219       219/219
(100 %)
0 diff
(100 %id)
BM465316 eye, retinoblastoma .k-u 1648 to 1816 13 to 181       169/184
(91 %)
1 diff
(99.5 %id)
DA611816   .k-u 1885 to 2465 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
AA338089 endometrium .k-u 2201 to 2528 1 to 328       328/328
(100 %)
0 diff
(100 %id)
DB356078 whole embryo, mainly head .k-u 3794 to 4350 552 to 1   tiling clone,   552/553
(99 %)
13 diff
(97.7 %id)
DB345091 thymus .k-u 3794 to 4343 550 to 1   to resequence,   550/551
(99 %)
0 diff
(100 %id)
CN360051 embryonic stem cells, cell lines H1, H7, andH9 .l-u 1 to 689 1 to 690   tiling clone,   690/690
(100 %)
1 diff
(99.9 %id)
AW299580 Kidney .l-u 4 to 545 542 to 1       542/542
(100 %)
1 diff
(99.9 %id)
AA926921 pooled .l-u 265 to 497 233 to 1       233/233
(100 %)
0 diff
(100 %id)
AK021649 whole embryo, mainly head .l-u 270 to 2577 1 to 2308 exact tiling clone, available from FLJ,   2308/2308
(100 %)
1 diff
(100.0 %id)
AU118497 whole embryo, mainly head .l-u 271 to 1133 2 to 856   capped   855/855
(100 %)
13 diff
(98.5 %id)
EB362278 eye, lens .l-u 446 to 1126 681 to 1   tiling clone,   681/681
(100 %)
0 diff
(100 %id)
DA187385 amygdala .l-u 454 to 987 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
BG027507 Bone, osteosarcoma, cell line .l-u 517 to 1017 1 to 501   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 501/501
(100 %)
0 diff
(100 %id)
DB466851 hippocampus .l-u 527 to 962 1 to 433       433/433
(100 %)
27 diff
(93.8 %id)
BQ223192 melanotic melanoma, skin .l-u 878 to 1392 1 to 528 K33T K39N E48D Q52P Q66P ...     528/1072
(49 %)
45 diff
(95.9 %id)
BQ380400 uterus_tumor .l-u 903 to 1092 17 to 206       190/208
(91 %)
5 diff
(97.6 %id)
N42989 melanocyte .l-u 954 to 1392 1 to 441       441/445
(99 %)
3 diff
(99.4 %id)
CR735964 melanocyte .l-u 955 to 1713 1 to 757       757/757
(100 %)
2 diff
(99.8 %id)
AL707569 human skeletal muscle .l-u 1196 to 1992 15 to 811       797/811
(98 %)
6 diff
(99.3 %id)
DA192126 amygdala .l-u 1280 to 1891 2 to 613   capped   612/612
(100 %)
0 diff
(100 %id)
BE169999 head_neck .l-u 1374 to 1820 457 to 14     Submitted on the opposite strand 444/457
(97 %)
0 diff
(100 %id)
DA312346 hippocampus .l-u 1428 to 1944 2 to 517   capped   516/516
(100 %)
1 diff
(99.9 %id)
DA236662 brain .l-u 1494 to 2081 2 to 587   capped   586/586
(100 %)
3 diff
(99.5 %id)
DA870510 Prostate .l-u 1685 to 2175 2 to 492   capped   491/491
(100 %)
0 diff
(100 %id)
DA231751 brain .l-u 1721 to 2266 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
AW995459 breast_normal .l-u 1768 to 2202 435 to 1     Submitted on the opposite strand 435/435
(100 %)
5 diff
(98.9 %id)
AL706312 human skeletal muscle .l-u 1863 to 2444 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
AL705729 human skeletal muscle .l-u 1865 to 2550 1 to 686       686/686
(100 %)
2 diff
(99.8 %id)
DB154334 thymus .l-u 1933 to 2516 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
AU145043 whole embryo, mainly head .l-u 1985 to 2577 599 to 1       599/599
(100 %)
9 diff
(98.5 %id)
N33328 melanocyte .l-u 2147 to 2577 433 to 1       433/434
(99 %)
2 diff
(99.6 %id)
BG426922 Kidney .m-u 1 to 825 1 to 818   tiling clone,   818/838
(97 %)
15 diff
(98.3 %id)
BE891867 melanotic melanoma, skin .m-u 433 to 1152 15 to 729   tiling clone,   715/929
(76 %)
13 diff
(98.7 %id)
AI114739 Liver .m-u 839 to 1512 673 to 1 exact tiling clone,   673/674
(99 %)
1 diff
(99.9 %id)
T85116 liver and spleen .m-u 1258 to 1597 338 to 2       337/338
(99 %)
0 diff
(100 %id)
AW015285   .m-u 1425 to 1598 191 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 174/305
(57 %)
0 diff
(100 %id)
BE551507 pooled germ cell tumors .m-u 1425 to 1598 174 to 1       174/262
(66 %)
0 diff
(100 %id)
BE672133 pooled germ cell tumors .m-u 1425 to 1598 174 to 1       174/262
(66 %)
0 diff
(100 %id)
BF223791 pooled germ cell tumors .m-u 1425 to 1597 173 to 1       173/261
(66 %)
0 diff
(100 %id)
AL700783 human skeletal muscle .n-u 1 to 710 1 to 709 exact     709/709
(100 %)
1 diff
(99.9 %id)
AL699932 human skeletal muscle .n-u 1 to 710 1 to 709 exact tiling clone,   709/709
(100 %)
1 diff
(99.9 %id)
AI188066   .o-u 1 to 316 1 to 315 exact tiling clone, Submitted on the opposite strand 315/315
(100 %)
2 diff
(99.4 %id)
AW473364 serous papillary carcinoma, high grade, 2pooled tumors, uterus .o-u 272 to 689 418 to 1   tiling clone,   418/418
(100 %)
1 diff
(99.8 %id)
AI052448 liver and spleen .o-u 274 to 688 415 to 1       415/415
(100 %)
3 diff
(99.3 %id)
AK293303   Gene API5, variant not shown         Suspected internal deletion, this clone was ignored    
DC300160   Gene API5, variant not shown         Suspected internal deletion, this clone was ignored    
AI979287 pooled germ cell tumors Gene API5, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l-u, .m-u, .n-u, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI