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Gene ATG16L1andSCARNA6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
426 supporting clones for gene ATG16L1andSCARNA6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_030803.6   .a 1 to 3410 2 to 3411 exact RefSeq,   3411/3411
(100 %)
6 diff
(99.9 %id)
DB469352 hippocampus .a 46 to 778 1 to 732   tiling clone,   732/732
(100 %)
25 diff
(96.6 %id)
BI831309 brain, medulla .a 54 to 812 1 to 757       757/761
(99 %)
13 diff
(98.3 %id)
TI_57176988   .a 54 to 812 58 to 814       757/818
(92 %)
18 diff
(97.8 %id)
DA315920 hippocampus .a 64 to 605 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA723566   .a 72 to 627 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA023313   .a 77 to 641 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA240668 brain .a 77 to 669 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA301777 hippocampus .a 77 to 656 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA393915 thalamus .a 77 to 666 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA483292 brain .a 77 to 819 2 to 746   capped   745/753
(98 %)
5 diff
(99.4 %id)
DA698113   .a 77 to 609 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA739506   .a 77 to 621 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA760114   .a 77 to 627 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA804500 brain .a 77 to 635 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DA806105 brain .a 77 to 630 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DB136245 thymus .a 77 to 624 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB144381 thymus .a 77 to 617 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DB160267 thymus .a 77 to 668 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
BG702756 brain, hippocampus .a 78 to 753 1 to 677       677/677
(100 %)
5 diff
(99.3 %id)
DA994271 synovial membrane tissue from rheumatioidarthritis .a 78 to 613 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA810940 brain .a 79 to 630 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA114159 cerebellum .a 83 to 645 2 to 567   capped   564/567
(99 %)
6 diff
(99.0 %id)
DA218547 brain .a 83 to 629 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA397349 thalamus .a 83 to 657 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DB020792 testis .a 83 to 645 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DB093539 testis .a 83 to 647 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA110385 cerebellum .a 84 to 648 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA193077 amygdala .a 84 to 669 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DB088937 testis .a 84 to 627 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DB094902 testis .a 84 to 650 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA196852 amygdala .a 85 to 652 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
AI928983 brain, frontal lobe .a 87 to 644 1 to 559       559/730
(76 %)
8 diff
(99.0 %id)
DA408425 thalamus .a 90 to 648 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA114881 cerebellum .a 93 to 672 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
DA243439 brain .a 93 to 679 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA327051 hippocampus .a 93 to 684 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA337229 hippocampus .a 93 to 671 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA411157 thalamus .a 93 to 749 2 to 658   capped   657/657
(100 %)
1 diff
(99.9 %id)
DB144340 thymus .a 95 to 623 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DA401376 thalamus .a 98 to 630 2 to 535   capped   534/534
(100 %)
4 diff
(99.3 %id)
BP202630 amygdala .a 99 to 683 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
DB222181 trachea .a 99 to 676 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA806135 brain .a 100 to 668 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DR000372 fetal brain .a 100 to 812 1 to 713       713/713
(100 %)
4 diff
(99.5 %id)
BP287843 lung .a 101 to 683 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DA655352   .a 101 to 669 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DB171974 kidney, tumor tissue .a 101 to 662 21 to 583   capped   563/582
(96 %)
6 diff
(99.0 %id)
DB221783 trachea .a 101 to 698 2 to 600   capped   599/599
(100 %)
2 diff
(99.7 %id)
DA102715 cerebellum .a 102 to 652 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA184575 amygdala .a 102 to 630 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DA266573 caudate nucleus .a 102 to 664 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA309084 hippocampus .a 102 to 674 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA335721 hippocampus .a 102 to 692 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA417308 thalamus .a 102 to 656 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA435568 tongue, tumor tissue .a 102 to 664 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA652997   .a 102 to 649 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DA738689   .a 102 to 653 2 to 553   capped   552/552
(100 %)
6 diff
(99.0 %id)
DA740998   .a 102 to 610 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DA808534 brain .a 102 to 684 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA858095 placenta .a 102 to 644 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA990476 synovial membrane tissue from rheumatioidarthritis .a 102 to 609 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
DB072776 testis .a 102 to 645 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DB094662 testis .a 102 to 665 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB137310 thymus .a 102 to 660 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB144824 thymus .a 102 to 630 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DB158183 thymus .a 102 to 671 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB161124 thymus .a 102 to 706 2 to 607   capped   606/606
(100 %)
2 diff
(99.7 %id)
DB231977 trachea .a 102 to 696 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DB241551 trachea .a 102 to 684 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DA192449 amygdala .a 103 to 669 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA566666 heart .a 103 to 684 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA803930 brain .a 103 to 648 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
CR984954 T-Lymphocytes .a 103 to 991 1 to 889   tiling clone,   889/889
(100 %)
0 diff
(100 %id)
BG419697 Kidney, renal cell adenocarcinoma .a 104 to 898 1 to 799       799/945
(84 %)
44 diff
(95.4 %id)
DA416902 thalamus .a 105 to 675 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB131414 thymus .a 105 to 650 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB133148 thymus .a 105 to 688 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
BG436798 large cell carcinoma, lung .a 106 to 662 1 to 559       559/712
(78 %)
15 diff
(97.9 %id)
BE891793 melanotic melanoma, skin .a 108 to 720 1 to 613       613/615
(99 %)
5 diff
(99.2 %id)
AY398617   .a 111 to 3399 1 to 3288 T300A     3288/3288
(100 %)
8 diff
(99.8 %id)
AL543998 placenta, Placenta Cot 25-normalized .a 111 to 898 1 to 789       789/792
(99 %)
21 diff
(97.4 %id)
BG323237 Kidney, renal cell adenocarcinoma .a 111 to 889 1 to 775       775/936
(82 %)
31 diff
(96.7 %id)
DA488189 brain .a 113 to 683 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA458090 tongue, tumor tissue .a 115 to 689 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB080330 testis .a 115 to 684 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
CV573089 cornea, eye .a 116 to 690 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
CN361440 embryonic stem cells, cell lines H1, H7, andH9 .a 122 to 656 1 to 535       535/535
(100 %)
2 diff
(99.7 %id)
BQ650718 hepatocellular carcinoma, cell line, Liver .a 122 to 974 12 to 860       849/960
(88 %)
21 diff
(97.9 %id)
BE273182 Kidney, renal cell adenocarcinoma .a 124 to 811 1 to 688   available from MGC,   688/737
(93 %)
29 diff
(96.1 %id)
BI553645 brain, hippocampus .a 127 to 872 1 to 747       747/909
(82 %)
11 diff
(98.8 %id)
BI560745 testis .a 129 to 840 1 to 714       714/714
(100 %)
7 diff
(99.1 %id)
AL709306 human skeletal muscle .a 130 to 750 1 to 621       621/621
(100 %)
1 diff
(99.9 %id)
BI765899 pooled colon, kidney, stomach .a 131 to 843 28 to 736       709/736
(96 %)
6 diff
(99.2 %id)
TI_57148872   .a 131 to 843 28 to 736       709/736
(96 %)
6 diff
(99.2 %id)
BP283408 bone marrow .a 131 to 722 1 to 592       592/592
(100 %)
0 diff
(100 %id)
DB457382 testis .a 132 to 600 1 to 469       469/469
(100 %)
1 diff
(99.8 %id)
DA554898   .a 132 to 683 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
TI_44167990   .a 132 to 872 123 to 864       742/1026
(72 %)
12 diff
(98.9 %id)
TI_44349735   .a 132 to 840 84 to 792       709/792
(89 %)
10 diff
(98.8 %id)
BP313377 mammary gland .a 132 to 714 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA105901 cerebellum .a 133 to 676 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA191295 amygdala .a 133 to 704 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA320849 hippocampus .a 133 to 765 2 to 634   capped   633/633
(100 %)
0 diff
(100 %id)
DA332102 hippocampus .a 133 to 718 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA386512 thalamus .a 133 to 724 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA707763   .a 133 to 710 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA714745   .a 133 to 667 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DA787723 brain .a 133 to 706 2 to 577   capped   576/576
(100 %)
6 diff
(99.0 %id)
DA932624 Spleen .a 133 to 692 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DB062572 testis .a 133 to 675 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB092118 testis .a 133 to 683 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
CN361442 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 135 to 804 1 to 670       670/670
(100 %)
1 diff
(99.9 %id)
BU171895 melanotic melanoma, skin .a 135 to 901 1 to 768       768/903
(85 %)
3 diff
(99.7 %id)
CN361439 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 146 to 836 1 to 691       691/691
(100 %)
1 diff
(99.9 %id)
AU133029   .a 155 to 959 2 to 816   capped   815/819
(99 %)
17 diff
(98.0 %id)
BP315029 mammary gland .a 155 to 736 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BE619378 large cell carcinoma, lung .a 160 to 903 1 to 737       737/873
(84 %)
18 diff
(98.0 %id)
DA211354 brain .a 165 to 732 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DN995538 breast cancer, Mammary gland (cancer tissue) .a 167 to 834 1 to 669       669/669
(100 %)
9 diff
(98.7 %id)
DR006093 Prostate .a 169 to 682 1 to 514       514/514
(100 %)
1 diff
(99.9 %id)
DA886213   .a 173 to 736 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DR005778 Prostate .a 288 to 708 1 to 421       421/421
(100 %)
1 diff
(99.8 %id)
BF328340 breast_normal .a 314 to 716 11 to 416       406/418
(97 %)
19 diff
(95.5 %id)
CD702827 normal nasopharynx .a 324 to 881 16 to 573       558/573
(97 %)
10 diff
(98.3 %id)
BE009729 breast_normal .a 331 to 837 27 to 532       506/532
(95 %)
7 diff
(98.7 %id)
BM542093 melanotic melanoma, skin .a 333 to 1018 1 to 695       695/1403
(49 %)
20 diff
(98.6 %id)
TI_1320131111   .a 335 to 1465 53 to 1173       1121/1269
(88 %)
22 diff
(98.3 %id)
AV718041 hypothalamus .a 338 to 901 1 to 563       563/703
(80 %)
17 diff
(97.6 %id)
BC117337 Colon, PCR rescued clones .a 338 to 3009 1 to 2672   tiling clone,   2672/2672
(100 %)
1 diff
(100.0 %id)
BE907639 epithelioid carcinoma, Pancreas .a 345 to 1055 1 to 709       709/919
(77 %)
11 diff
(98.9 %id)
AU154444   .a 2836 to 3400 560 to 1   tiling clone,   560/562
(99 %)
11 diff
(98.1 %id)
AI929233 brain, frontal lobe .a 2964 to 3400 444 to 8       437/444
(98 %)
0 diff
(100 %id)
NM_017974.3   .b 1 to 3353 2 to 3354 exact RefSeq,   3354/3354
(100 %)
6 diff
(99.9 %id)
AK308400 trachea .b 100 to 1894 1 to 1791   tiling clone,   1791/1791
(100 %)
6 diff
(99.7 %id)
EF560734 endometrium .b 130 to 2148 1 to 2019 S357G     2019/2019
(100 %)
2 diff
(100.0 %id)
AK001690   .b 154 to 3343 1 to 3189 K336N C337V E338S F339S K340R ... tiling clone, available from FLJ,   3189/3189
(100 %)
2 diff
(100.0 %id)
EF079889   .b 257 to 2023 1 to 1767 exact     1767/1767
(100 %)
0 diff
(100 %id)
BQ932369 sciatic nerve .b 330 to 1202 1 to 882       882/887
(99 %)
22 diff
(97.6 %id)
TI_2194628916   .b 335 to 1475 46 to 1173       1128/1295
(87 %)
20 diff
(98.5 %id)
TI_2194630848   .b 335 to 1481 52 to 1190       1139/1284
(88 %)
17 diff
(98.7 %id)
BC143900 Colon, PCR rescued clones .b 338 to 2952 1 to 2615       2615/2615
(100 %)
1 diff
(100.0 %id)
AK027854 placenta .b 418 to 3339 1 to 2923   available from FLJ,   2923/2923
(100 %)
9 diff
(99.7 %id)
AU140230 placenta .b 419 to 1154 2 to 733   capped   732/799
(91 %)
9 diff
(98.9 %id)
BC071846 Breast, adenocarcinoma .b 594 to 3339 1 to 2746   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 2746/2746
(100 %)
0 diff
(100 %id)
BU860524 adenocarcinoma, cell line, breast .b 595 to 1403 1 to 815       815/877
(92 %)
13 diff
(98.6 %id)
BU860551 adenocarcinoma, cell line, breast .b 595 to 1452 1 to 864   available from MGC,   864/865
(99 %)
8 diff
(99.1 %id)
TI_2194631893   .b 698 to 1799 1 to 1099       1100/1099
(100 %)
11 diff
(99.0 %id)
CN361436 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 738 to 1321 1 to 584       584/584
(100 %)
3 diff
(99.5 %id)
DB201159 trachea .b 742 to 1336 2 to 597   capped   596/596
(100 %)
2 diff
(99.7 %id)
CR975169 T-Lymphocytes .b 801 to 1527 1 to 727       727/727
(100 %)
0 diff
(100 %id)
AU158375 placenta .b 2788 to 3339 548 to 1       548/553
(99 %)
14 diff
(97.5 %id)
NM_001190266.1   .c 1 to 3408 2 to 3409 exact RefSeq,   3409/3409
(100 %)
6 diff
(99.9 %id)
DB068439 testis .c 77 to 619 2 to 544   tiling clone, capped   543/543
(100 %)
1 diff
(99.9 %id)
DB040924 testis .c 84 to 615 9 to 540   capped   532/532
(100 %)
1 diff
(99.9 %id)
BC000061 Kidney, renal cell adenocarcinoma .c 102 to 3394 1 to 3293 T216A G381R tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3293/3293
(100 %)
8 diff
(99.8 %id)
DA722925   .c 117 to 678 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
CX163028 human embryonic stem cells differentiated toan early endodermal cell type .c 119 to 937 1 to 819       819/819
(100 %)
0 diff
(100 %id)
DB456740 testis .c 132 to 847 1 to 711       711/714
(99 %)
12 diff
(98.4 %id)
AA169817   .c 393 to 927 1 to 533     Submitted on the opposite strand 533/533
(100 %)
4 diff
(99.3 %id)
CN361445 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 429 to 1109 1 to 682       682/686
(99 %)
3 diff
(99.6 %id)
BQ220443 melanotic melanoma, skin .c 492 to 1052 1 to 575       575/980
(58 %)
25 diff
(97.5 %id)
BX369866 Placenta Cot 25-normalized .c 517 to 1429 1 to 913   tiling clone,   913/914
(99 %)
16 diff
(98.3 %id)
BQ224995 epithelioid carcinoma, Pancreas .c 538 to 1312 1 to 780       780/911
(85 %)
34 diff
(96.3 %id)
NM_001190267.1   .d 1 to 3406 2 to 3407 exact RefSeq,   3407/3407
(100 %)
6 diff
(99.9 %id)
DB084962 testis .d 1 to 558 2 to 559   tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
DB474638 hippocampus .d 46 to 554 1 to 509       509/509
(100 %)
3 diff
(99.5 %id)
TI_1540413484   .d 77 to 528 456 to 5       452/522
(86 %)
2 diff
(99.7 %id)
TI_1540413578   .d 77 to 530 455 to 2       454/474
(95 %)
4 diff
(99.2 %id)
DB455180 testis .d 89 to 559 1 to 471       471/471
(100 %)
2 diff
(99.6 %id)
TI_1540413390   .d 101 to 533 434 to 2   tiling clone,   433/434
(99 %)
0 diff
(100 %id)
CN361435 embryonic stem cells, cell lines H1, H7, andH9 .d 110 to 337 1 to 228       228/228
(100 %)
3 diff
(98.7 %id)
AL528696 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .d 119 to 562 10 to 452     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 443/452
(98 %)
22 diff
(95.2 %id)
BQ932742 leiomyosarcoma, uterus .d 120 to 463 1 to 344       344/1152
(29 %)
9 diff
(99.3 %id)
CN361441 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 122 to 659 1 to 538       538/538
(100 %)
2 diff
(99.7 %id)
BE019919 adenocarcinoma cell line, ovary .d 143 to 653 1 to 511   available from MGC,   511/511
(100 %)
5 diff
(99.1 %id)
CN361447 embryonic stem cells, cell lines H1, H7, andH9 .d 147 to 328 1 to 182       182/182
(100 %)
0 diff
(100 %id)
CN361438 embryonic stem cells, cell lines H1, H7, andH9 .d 148 to 510 1 to 363       363/363
(100 %)
0 diff
(100 %id)
DA396581 thalamus .d 162 to 756 2 to 596   tiling clone, capped   595/595
(100 %)
1 diff
(99.9 %id)
CN361437 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 168 to 535 1 to 368       368/368
(100 %)
0 diff
(100 %id)
BG949805 breast_normal .d 313 to 416 1 to 104       104/104
(100 %)
2 diff
(98.1 %id)
DA542059 lung .d 595 to 1184 2 to 591   tiling clone, capped   590/590
(100 %)
0 diff
(100 %id)
DA578713   .d 600 to 1163 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BG422116 Kidney, renal cell adenocarcinoma .d 611 to 1173 1 to 563       563/567
(99 %)
3 diff
(99.5 %id)
DN993517 brain, whole brain .d 810 to 1510 5 to 705       701/709
(98 %)
10 diff
(98.6 %id)
CN361444 embryonic stem cells, DMSO-treated H9 cellline .d 892 to 1378 1 to 487       487/533
(91 %)
2 diff
(99.7 %id)
AW840337 leiomios .d 946 to 1255 319 to 1       328/330
(99 %)
9 diff
(97.3 %id)
BF358149 leiomios .d 955 to 1264 1 to 311       311/311
(100 %)
10 diff
(96.8 %id)
BE934887 leiomios .d 956 to 1263 313 to 5       309/313
(98 %)
1 diff
(99.7 %id)
BE934892 leiomios .d 956 to 1242 293 to 9       285/293
(97 %)
1 diff
(99.7 %id)
BF358143 leiomios .d 956 to 1255 313 to 5       319/313
(101 %)
56 diff
(82.2 %id)
AW840002 leiomios .d 960 to 1264 304 to 1       304/308
(98 %)
2 diff
(99.4 %id)
BF358082 leiomios .d 960 to 1264 24 to 332       309/332
(93 %)
10 diff
(97.0 %id)
DA203074 brain .d 1013 to 1565 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
AK074434 Human lung .d 1026 to 3392 1 to 2365   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 2365/2365
(100 %)
5 diff
(99.8 %id)
BF358098 leiomios .d 1057 to 1278 222 to 3       220/222
(99 %)
7 diff
(96.9 %id)
CD632807   .d 1122 to 1845 39 to 768       728/768
(94 %)
18 diff
(97.7 %id)
CV335094 uterus_tumor .d 1176 to 1679 507 to 4   tiling clone, Submitted on the opposite strand 504/507
(99 %)
0 diff
(100 %id)
BG481406 choriocarcinoma, placenta .d 1188 to 1750 1 to 564       564/567
(99 %)
9 diff
(98.5 %id)
TI_2194632532   .d 1207 to 2248 24 to 1060       1037/1060
(97 %)
12 diff
(98.9 %id)
BQ226461 embryonal carcinoma, cell line, testis .d 1207 to 1756 1 to 553       553/1131
(48 %)
19 diff
(98.4 %id)
CD632810   .d 1226 to 1978 1 to 755       755/799
(94 %)
7 diff
(99.2 %id)
CV335125 uterus_tumor .d 1240 to 1668 429 to 1     Submitted on the opposite strand 429/429
(100 %)
1 diff
(99.8 %id)
CD632808   .d 1304 to 2014 729 to 17       713/775
(92 %)
19 diff
(97.6 %id)
BM473553 melanotic melanoma, skin .d 1332 to 2402 1 to 1080       1080/1080
(100 %)
24 diff
(97.8 %id)
DA965050 stomach .d 1366 to 1946 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA372234 thalamus .d 1433 to 1995 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
CD632809   .d 1438 to 2325 897 to 7       891/897
(99 %)
8 diff
(99.2 %id)
BI758390 brain .d 1476 to 2170 37 to 736       700/860
(81 %)
21 diff
(97.6 %id)
TI_57219243   .d 1476 to 2170 37 to 736       700/860
(81 %)
21 diff
(97.6 %id)
BG700124 brain, hippocampus .d 1525 to 2313 1 to 785       785/785
(100 %)
8 diff
(99.0 %id)
BU858217 adenocarcinoma, cell line, breast .d 1528 to 2308 1 to 788       788/907
(86 %)
19 diff
(98.0 %id)
BE385946 melanotic melanoma, skin .d 1534 to 2256 1 to 722   tiling clone,   722/776
(93 %)
18 diff
(97.7 %id)
BM842581 lymph node, stomach .d 1564 to 2214 1 to 652       652/652
(100 %)
1 diff
(99.9 %id)
BM846001 lymph node, stomach .d 1593 to 1947 1 to 355       355/355
(100 %)
0 diff
(100 %id)
AA113099   .d 1595 to 1982 1 to 392       392/392
(100 %)
4 diff
(99.0 %id)
F13421 brain, total brain .d 1598 to 1864 1 to 267       267/267
(100 %)
0 diff
(100 %id)
FN136171 breast carcinoma .d 1746 to 1814 1 to 69       69/69
(100 %)
2 diff
(97.2 %id)
BG255769 adenocarcinoma, cell line, Prostate .d 1838 to 2553 1 to 713       713/713
(100 %)
4 diff
(99.5 %id)
BM712214 eye, lens .d 1838 to 2248 1 to 411     Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 411/411
(100 %)
0 diff
(100 %id)
BQ675489 epidermoid carcinoma, cell line, salivary gland .d 1840 to 2467 1 to 627       627/927
(67 %)
7 diff
(99.3 %id)
W92163 liver and spleen .d 1851 to 2276 1 to 438       438/438
(100 %)
15 diff
(96.6 %id)
AA135663 uterus .d 1860 to 2285 1 to 444       444/537
(82 %)
21 diff
(96.1 %id)
AA312057   .d 1880 to 2269 1 to 390       390/390
(100 %)
1 diff
(99.8 %id)
AW953540   .d 1881 to 2523 1 to 643       643/644
(99 %)
12 diff
(98.2 %id)
TI_2194630851   .d 1882 to 3018 1191 to 61       1131/1259
(89 %)
11 diff
(99.2 %id)
BX350039 Placenta Cot 25-normalized .d 1893 to 2763 861 to 1       859/875
(98 %)
36 diff
(95.9 %id)
CK821017 Islets of Langerhans, Pancreas .d 1950 to 2430 1 to 481       481/481
(100 %)
0 diff
(100 %id)
BM791107 stomach .d 1960 to 2631 1 to 665       665/665
(100 %)
4 diff
(99.4 %id)
BI793098 Islets of Langerhans, Pancreas .d 1966 to 2540 1 to 575       575/575
(100 %)
0 diff
(100 %id)
TI_2194631168   .d 1989 to 3018 1155 to 127       1029/1277
(80 %)
0 diff
(100 %id)
TI_2194629295   .d 2002 to 3018 1068 to 56       1013/1289
(78 %)
0 diff
(100 %id)
BM809401 amelanotic melanoma, cell line, skin .d 2022 to 2922 24 to 927       904/1087
(83 %)
41 diff
(96.3 %id)
TI_2194631898   .d 2047 to 3005 1 to 961       961/1048
(91 %)
10 diff
(99.1 %id)
AA053448 colon, tumor .d 2078 to 2498 1 to 428       428/428
(100 %)
8 diff
(98.2 %id)
F12047 brain, total brain .d 2194 to 2516 1 to 325       325/325
(100 %)
4 diff
(98.8 %id)
W91893 liver and spleen .d 2204 to 2822 1 to 620       620/623
(99 %)
12 diff
(98.1 %id)
BQ880807 epidermoid carcinoma, cell line, salivary gland .d 2205 to 2996 1 to 796       796/910
(87 %)
31 diff
(96.6 %id)
BX089202 liver and spleen .d 2236 to 2911 35 to 709       675/709
(95 %)
6 diff
(99.2 %id)
W07689 lung .d 2263 to 2733 7 to 478       472/478
(98 %)
6 diff
(98.8 %id)
TI_2194631897   .d 2287 to 3018 1 to 730       730/1047
(69 %)
6 diff
(99.5 %id)
AA310223   .d 2381 to 2889 1 to 508       508/508
(100 %)
3 diff
(99.5 %id)
W84800 liver and spleen .d 2396 to 2809 18 to 431       414/431
(96 %)
6 diff
(98.7 %id)
AA774265 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2477 to 2986 1 to 509       509/509
(100 %)
10 diff
(98.1 %id)
AA026273 heart .d 2490 to 2732 1 to 244       244/248
(98 %)
4 diff
(98.4 %id)
BM692428 eye, Retina Foveal and Macular .d 2499 to 2942 1 to 444       444/444
(100 %)
6 diff
(98.7 %id)
AV746016 Pituitary .d 2507 to 2951 1 to 435       435/437
(99 %)
5 diff
(98.9 %id)
AV745527 Pituitary .d 2512 to 3219 1 to 705       705/705
(100 %)
61 diff
(91.4 %id)
AA258504 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2516 to 2938 1 to 422       422/422
(100 %)
5 diff
(98.9 %id)
AV745525 Pituitary .d 2516 to 3218 1 to 697       697/697
(100 %)
18 diff
(97.5 %id)
BU184468 leiomyosarcoma, uterus .d 2519 to 3381 1 to 879   tiling clone,   879/886
(99 %)
9 diff
(99.0 %id)
TI_154104123   .d 2522 to 3392 913 to 63   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 851/963
(88 %)
37 diff
(96.2 %id)
BQ438793 epithelioid carcinoma, Pancreas .d 2524 to 3391 1 to 872   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 872/874
(99 %)
14 diff
(98.4 %id)
CB157431 Liver .d 2524 to 3108 1 to 585       585/586
(99 %)
8 diff
(98.7 %id)
BP268303 thyroid .d 2527 to 3106 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BP430934   .d 2530 to 2916 8 to 395       388/395
(98 %)
6 diff
(98.5 %id)
AV745973 Pituitary .d 2535 to 2931 1 to 389       389/390
(99 %)
10 diff
(97.5 %id)
AV745577 Pituitary .d 2542 to 3221 1 to 670       670/672
(99 %)
22 diff
(96.8 %id)
AV746391 Pituitary .d 2542 to 2876 1 to 326       326/327
(99 %)
6 diff
(98.2 %id)
AV745555 Pituitary .d 2559 to 2951 1 to 381       381/385
(98 %)
9 diff
(97.7 %id)
AL543973 placenta, Placenta Cot 25-normalized .d 2585 to 3364 778 to 1       778/781
(99 %)
27 diff
(96.6 %id)
DB549942 hippocampus .d 2657 to 3392 1 to 736     Submitted on the opposite strand 736/736
(100 %)
4 diff
(99.5 %id)
AW373743 breast .d 2662 to 2894 1 to 232       232/232
(100 %)
9 diff
(96.2 %id)
DB728147 hippocampus .d 2666 to 3396 1 to 724     Submitted on the opposite strand 724/724
(100 %)
21 diff
(97.1 %id)
DB543467 hippocampus .d 2666 to 3396 1 to 729   tiling clone, Submitted on the opposite strand 729/729
(100 %)
3 diff
(99.6 %id)
AL563230 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .d 2692 to 3372 699 to 15     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 685/699
(97 %)
0 diff
(100 %id)
BE964478 large cell carcinoma, lung .d 2709 to 3392 718 to 15   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 704/706
(99 %)
49 diff
(93.1 %id)
BM677821 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2710 to 3395 1 to 686     Submitted on the opposite strand 686/709
(96 %)
2 diff
(99.8 %id)
BE620036 large cell carcinoma, lung .d 2713 to 3340 652 to 4       649/823
(78 %)
0 diff
(100 %id)
BP424647 small intestine .d 2718 to 3216 1 to 500     Submitted on the opposite strand 500/500
(100 %)
2 diff
(99.6 %id)
BU623762 cell lines, Enchondroma .d 2732 to 3392 676 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 658/669
(98 %)
4 diff
(99.5 %id)
BM670274 eye, lens .d 2739 to 3392 671 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 653/653
(100 %)
6 diff
(99.1 %id)
DB490984 hypothalamus .d 2740 to 3172 1 to 435       435/435
(100 %)
27 diff
(93.8 %id)
CA432524 cell lines, Chondrosarcoma .d 2741 to 3392 670 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 652/652
(100 %)
0 diff
(100 %id)
CA446284 Chondrosarcoma, Left Pubic Bone .d 2742 to 3392 669 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 651/651
(100 %)
5 diff
(99.3 %id)
TI_149312917   .d 2748 to 3392 727 to 85   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 643/948
(67 %)
6 diff
(99.4 %id)
CF541005 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 2760 to 3392 650 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 632/632
(100 %)
4 diff
(99.4 %id)
BM725393 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2765 to 3395 636 to 6     Submitted on the opposite strand 631/636
(99 %)
0 diff
(100 %id)
AW978599   .d 2805 to 3391 588 to 1     Submitted on the opposite strand 588/588
(100 %)
13 diff
(97.8 %id)
BQ189568 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2811 to 3392 1 to 582   fully sequenced, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 582/582
(100 %)
0 diff
(100 %id)
TI_151733895   .d 2811 to 3392 660 to 79   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 582/981
(59 %)
0 diff
(100 %id)
AI818138 anaplastic oligodendroglioma, brain .d 2824 to 3392 571 to 1       571/571
(100 %)
3 diff
(99.5 %id)
AI660802 colon, colonic mucosa from 3 patients with Crohn'sdisease .d 2825 to 3394 570 to 1       570/570
(100 %)
2 diff
(99.7 %id)
BF589377 pooled .d 2837 to 3395 561 to 3       559/561
(99 %)
0 diff
(100 %id)
M85998   .d 2840 to 3003 164 to 1       164/164
(100 %)
1 diff
(99.4 %id)
BE893167 melanotic melanoma, skin .d 2851 to 3331 1 to 481       481/481
(100 %)
4 diff
(99.2 %id)
EC479794 Prostate .d 2865 to 2959 94 to 1       94/94
(100 %)
1 diff
(99.0 %id)
W84745 liver and spleen .d 2961 to 3392 434 to 1       434/434
(100 %)
3 diff
(99.4 %id)
AA112287   .d 2964 to 3395 434 to 2       433/434
(99 %)
0 diff
(100 %id)
AA258347 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 2964 to 3392 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
N80566 lung .d 2966 to 3392 433 to 1       433/433
(100 %)
8 diff
(98.2 %id)
AA052971 colon, tumor .d 2985 to 3393 410 to 1       410/410
(100 %)
1 diff
(99.8 %id)
W92164 liver and spleen .d 3003 to 3395 405 to 2       404/494
(81 %)
0 diff
(100 %id)
AA135612 uterus .d 3023 to 3392 382 to 1       382/388
(98 %)
17 diff
(95.7 %id)
AA026274 heart .d 3044 to 3393 352 to 1       352/355
(99 %)
2 diff
(99.5 %id)
F08938 brain, total brain .d 3074 to 3399 326 to 1   tiling clone,   326/326
(100 %)
2 diff
(99.4 %id)
CK300416 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 3086 to 3395 325 to 16   fully sequenced, Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 310/325
(95 %)
0 diff
(100 %id)
W95112 liver and spleen .d 3132 to 3393 261 to 1       261/261
(100 %)
2 diff
(99.3 %id)
F11029 brain, total brain .d 3190 to 3395 218 to 11       208/218
(95 %)
0 diff
(100 %id)
BC013411 Ovary, adenocarcinoma .e 1 to 3235 1 to 3234 T165A tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3234/3234
(100 %)
8 diff
(99.8 %id)
BC006253 Ovary, adenocarcinoma .e 1 to 3235 1 to 3234 G62R T165A tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 3234/3234
(100 %)
9 diff
(99.8 %id)
AI052357 liver and spleen .e 2730 to 3238 510 to 2       509/510
(99 %)
0 diff
(100 %id)
DB522170 testis .e 2749 to 3235 1 to 487     Submitted on the opposite strand 487/487
(100 %)
2 diff
(99.6 %id)
AA639648 colon, colon tumor RER+ .e 2750 to 3224 475 to 1       475/475
(100 %)
2 diff
(99.6 %id)
BG236238 blood, lymphocyte .e 2750 to 3237 488 to 1       488/488
(100 %)
2 diff
(99.6 %id)
AA322551 brain, cerebellum .e 2752 to 3038 1 to 287       287/287
(100 %)
1 diff
(99.7 %id)
AW272820 colon, moderately-differentiated adenocarcinoma .e 2752 to 3238 487 to 1       487/487
(100 %)
1 diff
(99.8 %id)
BM145783 leukopheresis .e 2754 to 3233 498 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 480/485
(98 %)
0 diff
(100 %id)
AI623787 adenocarcinoma, Pancreas .e 2758 to 3229 473 to 2       472/473
(99 %)
0 diff
(100 %id)
BE206403 adenocarcinoma cell line, ovary .e 2761 to 3238 478 to 2   available from MGC,   477/478
(99 %)
0 diff
(100 %id)
CA843400 Pancreas, Purified pancreatic islet .e 2762 to 3235 474 to 1       474/474
(100 %)
1 diff
(99.8 %id)
BF436001 pooled .e 2764 to 3238 476 to 3       474/476
(99 %)
0 diff
(100 %id)
AI339035 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2767 to 3235 469 to 1   tiling clone,   469/469
(100 %)
0 diff
(100 %id)
DB520590 testis .e 2768 to 3235 1 to 468     Submitted on the opposite strand 468/468
(100 %)
1 diff
(99.8 %id)
AJ707050 heart .e 2773 to 3238 14 to 479       466/483
(96 %)
6 diff
(98.8 %id)
AI093450 uterus .e 2776 to 3235 460 to 1       460/460
(100 %)
0 diff
(100 %id)
DB522853 testis .e 2778 to 3235 1 to 458     Submitted on the opposite strand 458/459
(99 %)
2 diff
(99.6 %id)
AI808940 B-cell, chronic lymphotic leukemia .e 2779 to 3243 470 to 6       465/470
(98 %)
0 diff
(100 %id)
BQ423254 melanotic melanoma, skin .e 2781 to 3235 23 to 477   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 455/477
(95 %)
6 diff
(98.8 %id)
T87345.
matches multiple genes
liver and spleen .e 2782 to 3238 472 to 2     also hits gene CLTC 471/485
(97 %)
0 diff
(100 %id)
AA826484 carcinoid, lung .e 2796 to 3234 439 to 1       439/439
(100 %)
3 diff
(99.4 %id)
AW136252   .e 2810 to 3235 442 to 17   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 426/426
(100 %)
2 diff
(99.6 %id)
AA809053 breast, normal ductal tissue .e 2811 to 3243 454 to 23       432/457
(94 %)
0 diff
(100 %id)
AW874676 tumor, uterus .e 2815 to 3236 422 to 1       422/422
(100 %)
1 diff
(99.8 %id)
AI087338 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2823 to 3234 413 to 2       412/413
(99 %)
0 diff
(100 %id)
AA171466   .e 2824 to 3238 423 to 7     Submitted on the opposite strand 417/424
(98 %)
0 diff
(100 %id)
AI198334 anaplastic oligodendroglioma, brain .e 2831 to 3235 406 to 1       406/406
(100 %)
3 diff
(99.3 %id)
AI493312 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2833 to 3235 422 to 20   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 403/403
(100 %)
1 diff
(99.8 %id)
AI445331 colon, moderately-differentiated adenocarcinoma .e 2833 to 3235 403 to 1       403/403
(100 %)
4 diff
(99.1 %id)
AA115583.
matches multiple genes
uterus .e 2850 to 3235 391 to 1     also hits gene TMEM63B 391/391
(100 %)
3 diff
(99.3 %id)
AA938320 germinal center B cell .e 2860 to 3235 398 to 23   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 376/376
(100 %)
1 diff
(99.8 %id)
R01422 liver and spleen .e 2868 to 3230 373 to 2       372/374
(99 %)
0 diff
(100 %id)
AI186920 lung .e 2868 to 3236 369 to 1       369/369
(100 %)
1 diff
(99.8 %id)
AI350841 pooled germ cell tumors .e 2878 to 3238 362 to 1       362/362
(100 %)
1 diff
(99.8 %id)
AI688775 colon .e 2882 to 3221 340 to 1       340/340
(100 %)
2 diff
(99.5 %id)
BQ684475 melanotic melanoma, cell line, skin .e 2926 to 3231 1 to 306       306/1050
(29 %)
5 diff
(99.6 %id)
AW952676   .e 2945 to 3421 483 to 1   tiling clone, Submitted on the opposite strand 483/484
(99 %)
23 diff
(95.3 %id)
BQ027394 mixed .e 2952 to 3235 302 to 19   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 284/303
(93 %)
8 diff
(97.4 %id)
DW412432 Liver .e 2978 to 3235 17 to 274   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 258/274
(94 %)
6 diff
(97.9 %id)
FN164345 breast carcinoma .e 2989 to 3089 100 to 1     Submitted on the opposite strand 100/100
(100 %)
2 diff
(98.0 %id)
AW612379 Kidney .e 2999 to 3230 237 to 6       232/237
(97 %)
0 diff
(100 %id)
BF056883 pooled germ cell tumors .e 3029 to 3235 207 to 1       207/207
(100 %)
1 diff
(99.6 %id)
AI014359 germ cell tumor .e 3041 to 3234 194 to 1       194/194
(100 %)
0 diff
(100 %id)
AW272970 lung, two pooled squamous cell carcinomas .e 3053 to 3236 179 to 1       179/207
(86 %)
2 diff
(99.1 %id)
M85311   .e 3056 to 3421 374 to 8   tiling clone,   367/374
(98 %)
0 diff
(100 %id)
AI570313 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 3077 to 3235 159 to 1       159/159
(100 %)
0 diff
(100 %id)
AY358182   .f 1 to 3557 3 to 3559 exact tiling clone,   3559/3559
(100 %)
0 diff
(100 %id)
CR981720 T-Lymphocytes .f 1024 to 1639 1 to 619       619/619
(100 %)
3 diff
(99.6 %id)
BP346269 synovial membrane .f 1499 to 2079 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
CF780696 Pooled Chondrosarcoma Tumor cells .f 1601 to 2354 8 to 743       741/918
(80 %)
25 diff
(97.3 %id)
CF780679 Pooled Chondrosarcoma Tumor cells .f 1601 to 2360 8 to 751       749/889
(84 %)
20 diff
(97.8 %id)
AK026330 human small intestine .f 1683 to 3557 1 to 1875   available from FLJ, AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1875/1875
(100 %)
7 diff
(99.7 %id)
BP263069 small intestine .f 1683 to 2250 1 to 568       568/568
(100 %)
5 diff
(99.2 %id)
NM_198890.2   .g 1 to 2921 2 to 2922 exact RefSeq,   2922/2922
(100 %)
6 diff
(99.8 %id)
CN361446 embryonic stem cells, DMSO-treated H9 cellline .g 105 to 748 9 to 652   tiling clone,   644/652
(98 %)
7 diff
(99.0 %id)
EF079890   .g 257 to 1591 1 to 1335 exact tiling clone,   1335/1335
(100 %)
0 diff
(100 %id)
CX787093 human embryonic stem cells .g 296 to 1093 1 to 797       797/797
(100 %)
1 diff
(99.9 %id)
BF204335 muscle, rhabdomyosarcoma .g 529 to 1203 1 to 680       680/871
(78 %)
15 diff
(98.3 %id)
AW816791 stomach .g 532 to 786 258 to 3       256/262
(97 %)
3 diff
(98.9 %id)
AW840084 leiomios .g 532 to 779 25 to 271       247/271
(91 %)
7 diff
(97.5 %id)
BE076680 breast .g 532 to 770 251 to 3     Submitted on the opposite strand 260/255
(101 %)
58 diff
(77.3 %id)
BQ220059 large cell carcinoma, lung .g 597 to 1196 1 to 602       602/947
(63 %)
6 diff
(99.4 %id)
AK123876 brain .h 1 to 2759 1 to 2481 exact tiling clone, available from FLJ, Suspected internal deletion 2481/2481
(100 %)
1 diff
(100.0 %id)
AK024453 Spleen .i 1 to 4206 3 to 4208 exact tiling clone, available from FLJ,   4208/4208
(100 %)
0 diff
(100 %id)
DA126037 cerebellum .j 1 to 581 9 to 589   tiling clone, capped   588/588
(100 %)
1 diff
(99.9 %id)
BG716259 brain, hypothalamus .j 1 to 690 7 to 694   tiling clone,   689/694
(99 %)
11 diff
(98.5 %id)
AA324094 brain, cerebellum .j 582 to 875 1 to 294   tiling clone,   294/294
(100 %)
2 diff
(99.4 %id)
CN361443 embryonic stem cells, cell lines H1, H7, andH9 .k 1 to 684 1 to 684 exact tiling clone,   684/684
(100 %)
1 diff
(99.9 %id)
DB481124 hippocampus .l 1 to 734 1 to 734 T67A R168P tiling clone,   734/740
(99 %)
3 diff
(99.6 %id)
BQ955004 sciatic nerve .m 1 to 916 1 to 917 V137G N147M A148G V149G A150G ... tiling clone,   917/922
(99 %)
11 diff
(98.9 %id)
BF981189 duodenal adenocarcinoma, cell line, small intestine .m 415 to 1235 1 to 809       809/924
(87 %)
24 diff
(97.5 %id)
N36576 melanocyte .m 417 to 940 1 to 540       536/540
(99 %)
18 diff
(96.7 %id)
CR975472 T-Lymphocytes .m 433 to 1202 1 to 774       774/778
(99 %)
6 diff
(99.3 %id)
TI_2194631895   .m 471 to 1440 971 to 6       966/971
(99 %)
8 diff
(99.2 %id)
BF036746 adenocarcinoma, ovary .m 500 to 1232 1 to 732       732/751
(97 %)
11 diff
(98.6 %id)
AL834526 testis .m 618 to 2157 1 to 1415   tiling clone, available from DKFZ, AAA Suspected internal deletion, possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 1415/1415
(100 %)
0 diff
(100 %id)
TI_1320133917   .n 1 to 798 8 to 805 V2F P4A L5I tiling clone,   798/809
(98 %)
13 diff
(98.4 %id)
TI_2194632537   .n 14 to 1051 21 to 1050   tiling clone,   1030/1106
(93 %)
42 diff
(96.3 %id)
BI753645 brain .n 31 to 729 1 to 699       699/700
(99 %)
1 diff
(99.9 %id)
TI_57216050   .n 31 to 729 31 to 729       699/730
(95 %)
7 diff
(99.1 %id)
CV805450 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .n 73 to 765 1 to 692       692/888
(77 %)
65 diff
(92.7 %id)
BG770025 melanotic melanoma, high MDR (cell line), skin .n 88 to 889 1 to 800       800/805
(99 %)
8 diff
(99.1 %id)
BM910525 astrocytoma grade IV, cell line, brain .n 152 to 1076 1 to 930   tiling clone,   930/1051
(88 %)
17 diff
(98.4 %id)
DB175788 kidney, tumor tissue .o 1 to 559 2 to 561 exact tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
DB149710 thymus .p 1 to 567 2 to 568 exact tiling clone, capped   567/567
(100 %)
2 diff
(99.7 %id)
DA110918 cerebellum .q 1 to 580 2 to 581 T35A tiling clone, capped   580/590
(98 %)
1 diff
(99.9 %id)
AA324006 brain, cerebellum .q 25 to 353 1 to 329       329/329
(100 %)
0 diff
(100 %id)
DA647307 mammary gland .r 1 to 904 2 to 910 Q63X tiling clone, capped   909/915
(99 %)
16 diff
(98.3 %id)
TI_149296199   .r 597 to 1386 882 to 94   tiling clone,   789/1074
(73 %)
0 diff
(100 %id)
CB854791 lung, Primary Lung Cystic Fibrosis EpithelialCells .r 760 to 1386 631 to 5   tiling clone,   627/631
(99 %)
0 diff
(100 %id)
AA677724 liver and spleen .r 958 to 1372 415 to 1   tiling clone,   415/415
(100 %)
0 diff
(100 %id)
BF509941   .r 1036 to 1372 354 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 337/337
(100 %)
0 diff
(100 %id)
DA227339 brain .s-u 1 to 462 2 to 463   tiling clone, to resequence, capped   462/468
(98 %)
6 diff
(98.8 %id)
DW427159 Liver .s-u 216 to 479 17 to 280   tiling clone,   264/280
(94 %)
6 diff
(97.9 %id)
AA601025 Schwannoma tumor .s-u 254 to 694 441 to 1   tiling clone,   441/441
(100 %)
10 diff
(97.8 %id)
DA092652 cerebellum .s-u 1031 to 1551 2 to 522   tiling clone, capped   521/521
(100 %)
5 diff
(99.1 %id)
AY077738   .s-u 1492 to 1757 1 to 266   tiling clone,   266/266
(100 %)
0 diff
(100 %id)
CV309716 colon_ins .s-u 1604 to 1735 147 to 13     Submitted on the opposite strand 135/164
(82 %)
8 diff
(95.2 %id)
BX107441 liver and spleen .s-u 2513 to 3267 1 to 756   tiling clone,   756/756
(100 %)
2 diff
(99.8 %id)
R97743 liver and spleen .s-u 2513 to 2959 1 to 455       455/457
(99 %)
13 diff
(97.2 %id)
DA493933 brain .s-u 2709 to 3218 2 to 512   tiling clone, capped   511/511
(100 %)
1 diff
(99.9 %id)
M85822   .s-u 2779 to 3168 1 to 391       391/391
(100 %)
2 diff
(99.5 %id)
H53123 liver and spleen .s-u 2961 to 3366 409 to 1   tiling clone,   409/409
(100 %)
5 diff
(98.8 %id)
R97744 liver and spleen .s-u 3011 to 3370 379 to 1   tiling clone,   379/381
(99 %)
20 diff
(94.8 %id)
AA248919   .s-u 3312 to 3667 1 to 350   tiling clone,   350/354
(98 %)
18 diff
(95.0 %id)
BU662843 blood .s-u 3615 to 3806 1 to 192       192/192
(100 %)
0 diff
(100 %id)
AA126848 lung, lung carcinoma .s-u 3620 to 4282 1 to 659       659/659
(100 %)
10 diff
(98.5 %id)
BU662510 blood .s-u 3623 to 4261 1 to 642       642/642
(100 %)
4 diff
(99.4 %id)
AA314105 colon .s-u 3624 to 4111 1 to 488   tiling clone,   488/488
(100 %)
0 diff
(100 %id)
BE009919 breast_normal .s-u 3646 to 3975 335 to 4     Submitted on the opposite strand 332/372
(89 %)
0 diff
(100 %id)
FN058842 breast carcinoma .s-u 3654 to 3751 1 to 96       96/96
(100 %)
2 diff
(98.0 %id)
FN110299 breast carcinoma .s-u 3767 to 3850 83 to 1     Submitted on the opposite strand 83/84
(98 %)
1 diff
(98.9 %id)
FN163815 breast carcinoma .s-u 3817 to 3886 1 to 70       70/70
(100 %)
3 diff
(95.8 %id)
T66199 whole brain .s-u 3844 to 4457 1 to 633   tiling clone,   633/634
(99 %)
35 diff
(94.5 %id)
AA417087   .s-u 3879 to 4322 1 to 444       444/444
(100 %)
9 diff
(98.0 %id)
AA352079   .s-u 3976 to 4298 1 to 325       325/325
(100 %)
4 diff
(98.8 %id)
AW449189   .s-u 4031 to 4396 381 to 16   tiling clone,   366/381
(96 %)
0 diff
(100 %id)
AI819992 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .s-u 4032 to 4396 367 to 3       365/367
(99 %)
0 diff
(100 %id)
AA368971 placenta .s-u 4044 to 4273 1 to 230       230/230
(100 %)
1 diff
(99.6 %id)
AW452996   .s-u 4053 to 4377 342 to 18   AAA Possibly primed on the genome, locally A rich (14/14 A in genome downstream of last aligned base) 325/325
(100 %)
2 diff
(99.4 %id)
AA384263 thyroid gland .s-u 4143 to 4421 1 to 280   tiling clone,   280/280
(100 %)
2 diff
(99.3 %id)
AV746241 Pituitary .s-u 4164 to 4376 1 to 210       210/228
(92 %)
2 diff
(99.2 %id)
EC445607 Prostate .s-u 4196 to 4287 94 to 4       91/94
(96 %)
0 diff
(100 %id)
EC518752 Prostate .s-u 4196 to 4287 95 to 4       92/95
(96 %)
0 diff
(100 %id)
AA115555 uterus .s-u 4242 to 4453 1 to 217   tiling clone,   217/226
(96 %)
8 diff
(96.5 %id)
DB298416 cerebellum .s-u 4461 to 5017 557 to 1   tiling clone,   557/557
(100 %)
1 diff
(99.9 %id)
DB305264 brain .s-u 4470 to 5017 548 to 1   to resequence,   548/548
(100 %)
3 diff
(99.5 %id)
DB315545 brain .s-u 4472 to 5017 546 to 1   tiling clone,   546/546
(100 %)
0 diff
(100 %id)
DA458602 tongue, tumor tissue .t 1 to 588 2 to 589 I47L A48Q E49N C50V tiling clone, capped   588/588
(100 %)
3 diff
(99.5 %id)
DA799472 brain .u 1 to 540 2 to 542 exact tiling clone, capped   541/541
(100 %)
2 diff
(99.7 %id)
BF326411 amnion_normal .va-u 1 to 315 315 to 1 exact tiling clone,   315/315
(100 %)
1 diff
(99.7 %id)
AI438995 B-cell, chronic lymphotic leukemia .vb-u 1 to 312 312 to 1 exact tiling clone,   312/312
(100 %)
0 diff
(100 %id)
NR_003006.1   .vc-u 1 to 266 1 to 266 exact RefSeq, tiling clone,   266/266
(100 %)
0 diff
(100 %id)
AK000897 whole embryo, mainly head Gene ATG16L1andSCARNA6, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
DB303509 amygdala Gene ATG16L1andSCARNA6, variant not shown              
DA194477 amygdala Gene ATG16L1andSCARNA6, variant not shown       capped      
BX504797   Gene ATG16L1andSCARNA6, variant not shown              
AU144117 whole embryo, mainly head Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
AU117221 whole embryo, mainly head Gene ATG16L1andSCARNA6, variant not shown       capped Suspected internal deletion, this clone was ignored    
AA255460 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
AA256858 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
AI081825 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
AI422532 brain, glioblastoma (pooled) Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
AI680254 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
BG721009 testis Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
BI856200 breast, mammary adenocarcinoma, cell line Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
TI_57186061   Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
N55989   Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
BP285967 lung Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
DB326410 brain Gene ATG16L1andSCARNA6, variant not shown         Suspected internal deletion, this clone was ignored    
DA785599 brain Gene ATG16L1andSCARNA6, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s-u, .t, .u, .va-u, .vb-u, .vc-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI