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Gene AP4E1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
125 supporting clones for gene AP4E1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC126308 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 1 to 4075 1 to 4075 C163R     4075/4075
(100 %)
3 diff
(100.0 %id)
BC130466 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 1 to 4075 1 to 4075 exact tiling clone,   4075/4075
(100 %)
1 diff
(100.0 %id)
DA496431 brain .a 1 to 569 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DB459867 testis .a 35 to 723 1 to 689       689/689
(100 %)
4 diff
(99.5 %id)
AF155156   .a 68 to 3603 1 to 3530 A30G L46F L214P E262N N264H ...     3530/3530
(100 %)
9 diff
(99.8 %id)
AB030653   .a 77 to 4228 1 to 4152 C163R tiling clone,   4152/4152
(100 %)
3 diff
(100.0 %id)
NM_007347.3   .a 77 to 6758 1 to 6682 exact RefSeq,   6682/6682
(100 %)
0 diff
(100 %id)
AA609064   .a 182 to 562 1 to 380     Submitted on the opposite strand 380/380
(100 %)
2 diff
(99.5 %id)
AI934996 pooled .a 182 to 562 1 to 381     Submitted on the opposite strand 381/381
(100 %)
0 diff
(100 %id)
BX095377   .a 184 to 583 413 to 12     Submitted on the opposite strand 402/413
(97 %)
2 diff
(99.6 %id)
TI_154157648   .a 376 to 952 664 to 88     Submitted on the opposite strand 577/582
(99 %)
2 diff
(99.7 %id)
AW502381 lymph .a 439 to 952 529 to 16     Submitted on the opposite strand 514/529
(97 %)
1 diff
(99.9 %id)
TI_1520872733   .a 532 to 1049 1 to 518       518/518
(100 %)
13 diff
(97.5 %id)
TI_1520876745   .a 649 to 1587 25 to 969       945/972
(97 %)
8 diff
(99.2 %id)
DA029977   .a 963 to 1532 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
AL596783 human spinal cord .a 1216 to 1764 28 to 576       549/576
(95 %)
6 diff
(99.0 %id)
TI_2194646458   .a 1382 to 2551 1 to 1169       1169/1277
(91 %)
31 diff
(97.6 %id)
TI_1607547627   .a 1393 to 2082 14 to 703       690/804
(85 %)
14 diff
(98.3 %id)
TI_1520872623   .a 1534 to 2626 1100 to 5       1096/1285
(85 %)
16 diff
(98.8 %id)
TI_1520876767   .a 1682 to 2689 1 to 1008       1008/1008
(100 %)
30 diff
(97.1 %id)
TI_1607547625   .a 1688 to 2516 15 to 844       830/847
(97 %)
16 diff
(98.2 %id)
TI_2194646479   .a 1691 to 2834 9 to 1159       1151/1292
(89 %)
24 diff
(98.2 %id)
TI_2194646457   .a 1693 to 2905 10 to 1223       1214/1280
(94 %)
23 diff
(98.3 %id)
TI_1520876763   .a 2057 to 3199 10 to 1145       1136/1148
(98 %)
26 diff
(97.8 %id)
TI_2194646468   .a 2071 to 3198 22 to 1150       1129/1278
(88 %)
25 diff
(98.1 %id)
TI_2194646465   .a 2071 to 3198 19 to 1146       1128/1254
(89 %)
18 diff
(98.6 %id)
TI_1607547629   .a 2071 to 2925 23 to 883       861/883
(97 %)
14 diff
(98.5 %id)
BE816687 breast_normal .a 2553 to 3036 484 to 1       484/484
(100 %)
0 diff
(100 %id)
TI_1607547631   .a 2565 to 3563 1 to 1004       1004/1009
(99 %)
21 diff
(98.0 %id)
TI_2194646478   .a 2566 to 3721 2 to 1147       1146/1246
(91 %)
26 diff
(98.0 %id)
TI_2194646471   .a 2567 to 3766 1 to 1180       1180/1256
(93 %)
28 diff
(97.8 %id)
AW795265 uterus .a 2801 to 2905 109 to 4       106/109
(97 %)
0 diff
(100 %id)
TI_2194646049   .a 2967 to 4076 1167 to 70       1098/1169
(93 %)
11 diff
(99.1 %id)
TI_1520874717   .a 2970 to 4075 1165 to 70       1094/1280
(85 %)
12 diff
(99.1 %id)
TI_2194646048   .a 3003 to 4075 1134 to 72       1063/1277
(83 %)
13 diff
(99.0 %id)
TI_2194646462   .a 3007 to 4075 1 to 1068       1068/1302
(82 %)
18 diff
(98.7 %id)
TI_1607547121   .a 3008 to 4076 1137 to 75       1063/1264
(84 %)
8 diff
(99.4 %id)
TI_2194646464   .a 3013 to 4076 8 to 1069       1062/1280
(82 %)
10 diff
(99.3 %id)
TI_1520875387   .a 3022 to 4075 1113 to 72       1042/1274
(81 %)
14 diff
(99.0 %id)
EC481531 Prostate .a 3037 to 3143 107 to 1       107/107
(100 %)
0 diff
(100 %id)
TI_2194645720   .a 3049 to 4076 1089 to 68       1022/1277
(80 %)
6 diff
(99.6 %id)
TI_2194645694   .a 3049 to 4075 1095 to 74       1022/1244
(82 %)
11 diff
(99.2 %id)
DB525311 testis .a 3102 to 3783 1 to 682     Submitted on the opposite strand 682/682
(100 %)
3 diff
(99.6 %id)
BU176006 eye, retinoblastoma .a 3114 to 3958 1 to 845       845/847
(99 %)
4 diff
(99.6 %id)
AL041881 testis .a 3247 to 3604 1 to 358   AAA   358/358
(100 %)
0 diff
(100 %id)
BQ307137 breast .a 3326 to 3941 16 to 628   tiling clone,   613/628
(97 %)
9 diff
(98.6 %id)
TI_2194646469   .a 3341 to 3980 1 to 640       640/640
(100 %)
9 diff
(98.6 %id)
TI_2194646470   .a 3345 to 4076 1 to 733       733/1314
(55 %)
9 diff
(99.4 %id)
DA121825 cerebellum .a 3350 to 3908 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
TI_1520876751   .a 3395 to 4075 1 to 685       685/719
(95 %)
9 diff
(98.8 %id)
BG010747 placenta_normal .a 3458 to 3791 37 to 363       327/363
(90 %)
6 diff
(98.4 %id)
TI_1520876747   .a 3667 to 3975 1 to 309       309/309
(100 %)
4 diff
(98.8 %id)
TI_2194646474   .a 3668 to 4076 1 to 410       410/1269
(32 %)
4 diff
(99.7 %id)
TI_2194646476   .a 3673 to 4075 1 to 404       404/1284
(31 %)
3 diff
(99.8 %id)
DB163161 thymus .a 3861 to 4452 2 to 594   tiling clone, capped   593/593
(100 %)
1 diff
(99.9 %id)
BX482528   .a 3957 to 4536 1 to 579       579/579
(100 %)
24 diff
(95.9 %id)
DA753787   .a 4321 to 4854 2 to 534   tiling clone, capped   533/542
(98 %)
2 diff
(99.7 %id)
CN290179 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 4469 to 5133 1 to 665   tiling clone,   665/665
(100 %)
0 diff
(100 %id)
R84847 eye, retina .a 4475 to 4844 1 to 371       371/371
(100 %)
2 diff
(99.5 %id)
AA018072 eye, retina .a 4475 to 4883 1 to 409       409/409
(100 %)
1 diff
(99.8 %id)
BG291141 bladder, transitional cell papilloma, cell line .a 4561 to 5081 1 to 520       520/520
(100 %)
7 diff
(98.7 %id)
CR627314 salivary gland .a 4582 to 6758 1 to 2177   tiling clone, available from DKFZ, AAA   2177/2177
(100 %)
2 diff
(100.0 %id)
N46370 melanocyte .a 4616 to 4908 1 to 295       295/295
(100 %)
3 diff
(99.0 %id)
BF172300 blood .a 4712 to 4907 1 to 196       196/196
(100 %)
0 diff
(100 %id)
BM457145 embryonal carcinoma, cell line, testis .a 4929 to 5614 709 to 20   AAA Submitted on the opposite strand 690/881
(78 %)
25 diff
(97.2 %id)
BU509505 leiomyosarcoma, uterus .a 4934 to 5806 36 to 910       875/914
(95 %)
13 diff
(98.6 %id)
N37059 melanocyte .a 4965 to 5598 629 to 1       629/634
(99 %)
12 diff
(98.2 %id)
CU449507 epidermis .a 5029 to 5697 682 to 14     Submitted on the opposite strand 669/697
(95 %)
0 diff
(100 %id)
AV647279 corresponding non cancerous liver tissue .a 5212 to 5617 10 to 416     Submitted on the opposite strand 407/416
(97 %)
6 diff
(98.6 %id)
AV647768 corresponding non cancerous liver tissue .a 5215 to 5617 1 to 403     Submitted on the opposite strand 403/403
(100 %)
3 diff
(99.3 %id)
AV646848 corresponding non cancerous liver tissue .a 5218 to 5617 7 to 406     Submitted on the opposite strand 400/406
(98 %)
9 diff
(97.8 %id)
AV647544 corresponding non cancerous liver tissue .a 5218 to 5617 8 to 407     Submitted on the opposite strand 400/407
(98 %)
6 diff
(98.6 %id)
H48664 liver and spleen .a 5378 to 5863 1 to 490       490/491
(99 %)
11 diff
(97.8 %id)
BI257424 cervical carcinoma cell line, cervix .a 5433 to 6241 1 to 819       819/822
(99 %)
35 diff
(95.8 %id)
DB152680 thymus .a 5531 to 5866 2 to 337   capped   336/336
(100 %)
0 diff
(100 %id)
DB325157   .a 6170 to 6752 583 to 1       583/583
(100 %)
4 diff
(99.4 %id)
DB346247 thymus .a 6211 to 6758 548 to 1   tiling clone,   548/548
(100 %)
0 diff
(100 %id)
AA018409 eye, retina .a 6357 to 6752 413 to 15   AAA   399/400
(99 %)
5 diff
(98.8 %id)
H48498 liver and spleen .a 6362 to 6726 376 to 1       376/380
(98 %)
16 diff
(95.8 %id)
CR749604 uterus endothel, primary cell culture .b 1 to 6654 1 to 6654 C88R A603V R719G S916G tiling clone, available from DKFZ, AAA   6654/6654
(100 %)
11 diff
(99.9 %id)
W02391 liver and spleen .b 5518 to 5926 1 to 421       421/523
(80 %)
14 diff
(97.4 %id)
BC015224 Lung, carcinoma, large cellundifferentiated. .b 5527 to 6653 1 to 1127   available from MGC, AAA   1127/1127
(100 %)
0 diff
(100 %id)
BE620128 large cell carcinoma, undifferentiated, lung .b 5547 to 6112 1 to 576   available from MGC,   576/576
(100 %)
21 diff
(96.4 %id)
CD706541 normal nasopharynx .b 5644 to 6045 47 to 449       403/449
(89 %)
6 diff
(98.7 %id)
BF214036 bone marrow, from acute myelogenous leukemia .b 5681 to 6242 1 to 571       571/639
(89 %)
17 diff
(97.4 %id)
BM740281 Ascites, stomach .b 5810 to 6449 1 to 640       640/640
(100 %)
1 diff
(99.9 %id)
BC040044.
matches multiple genes
leiomyosarcoma, uterus, Uterus, leiomyosarcoma .b 5894 to 6653 1 to 760   available from MGC, AAA also hits gene PAQR3 760/760
(100 %)
0 diff
(100 %id)
BC040045 Uterus, leiomyosarcoma .b 5894 to 6653 1 to 760   available from MGC, AAA   760/760
(100 %)
0 diff
(100 %id)
BM464241 leiomyosarcoma, uterus .b 5894 to 6653 1 to 759   available from MGC, AAA   759/759
(100 %)
1 diff
(99.9 %id)
BF870569 lung_tumor .b 5909 to 6089 1 to 181       181/181
(100 %)
0 diff
(100 %id)
BU625231 cell lines, Enchondroma .b 5930 to 6653 742 to 19   AAA   724/724
(100 %)
1 diff
(99.9 %id)
AA148944 uterus .b 5969 to 6272 1 to 308   fully sequenced,   308/308
(100 %)
9 diff
(97.1 %id)
BF185696 brain, glioblastoma .b 5987 to 6642 1 to 652       652/787
(82 %)
27 diff
(96.6 %id)
BX094278 liver and spleen .b 5990 to 6653 1 to 663   AAA   663/663
(100 %)
2 diff
(99.7 %id)
BQ026255 placenta .b 6031 to 6653 641 to 19   AAA   623/623
(100 %)
0 diff
(100 %id)
CK004975 brain/CNS, Human Brain - Frontal Cortex .b 6115 to 6653 1 to 539   AAA   539/539
(100 %)
3 diff
(99.5 %id)
BE172324 head_neck .b 6117 to 6377 260 to 1     Submitted on the opposite strand 260/260
(100 %)
3 diff
(98.9 %id)
BE940527 uterus_tumor .b 6133 to 6408 1 to 271       271/275
(98 %)
14 diff
(95.0 %id)
AA634439   .b 6168 to 6659 495 to 4       492/495
(99 %)
0 diff
(100 %id)
AA879439 pooled .b 6188 to 6654 470 to 4       467/470
(99 %)
0 diff
(100 %id)
AI168354 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 6207 to 6653 447 to 1       447/447
(100 %)
0 diff
(100 %id)
N57845 liver and spleen .b 6220 to 6654 444 to 1       444/444
(100 %)
14 diff
(96.9 %id)
AI687757 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b 6240 to 6654 415 to 1       415/415
(100 %)
6 diff
(98.6 %id)
AA148945 uterus .b 6242 to 6653 412 to 1   fully sequenced,   412/412
(100 %)
0 diff
(100 %id)
AI143020 senescent fibroblast .b 6254 to 6659 415 to 10       406/415
(97 %)
0 diff
(100 %id)
BG740353 skin .b 6256 to 6340 747 to 834       804/1012
(79 %)
19 diff
(98.2 %id)
AI032941 liver and spleen .b 6266 to 6653 388 to 1       388/388
(100 %)
0 diff
(100 %id)
AA759236   .b 6281 to 6659 383 to 5       379/383
(98 %)
0 diff
(100 %id)
BE844073 testis_normal .b 6292 to 6498 212 to 7       206/212
(97 %)
0 diff
(100 %id)
BF835576 head_neck .b 6292 to 6488 197 to 1     Submitted on the opposite strand 197/197
(100 %)
1 diff
(99.5 %id)
AI698568 pooled .b 6357 to 6657 301 to 1       301/301
(100 %)
0 diff
(100 %id)
AW062343 colon .b 6380 to 6653 284 to 12   AAA   273/274
(99 %)
2 diff
(99.3 %id)
N72565 liver and spleen .b 6469 to 6659 191 to 1       191/193
(98 %)
3 diff
(98.5 %id)
TI_2194645315   .c 1 to 1036 49 to 1076       1028/1242
(82 %)
20 diff
(98.4 %id)
TI_2194646044   .c 1 to 1118 48 to 1155       1108/1253
(88 %)
32 diff
(97.5 %id)
TI_2194646472   .c 1 to 988 249 to 1228     Submitted on the opposite strand 980/1269
(77 %)
33 diff
(97.4 %id)
BC144030 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .c 1 to 4024 1 to 4024 exact tiling clone,   4024/4024
(100 %)
5 diff
(99.9 %id)
TI_2194646467   .c 657 to 1912 6 to 1246       1241/1281
(96 %)
67 diff
(94.8 %id)
TI_2194646459   .c 877 to 1986 8 to 1106   tiling clone,   1099/1228
(89 %)
24 diff
(98.1 %id)
AK297290 brain .d 1 to 1602 2 to 1603 C163R E182G tiling clone,   1603/1603
(100 %)
2 diff
(99.9 %id)
TI_1520875385   .d 1 to 1172 50 to 1216   tiling clone,   1167/1246
(93 %)
39 diff
(96.9 %id)
TI_2194645341   .e 1 to 1124 49 to 1159 C163R I280N L281T L283T L284S ... tiling clone,   1111/1262
(88 %)
22 diff
(98.3 %id)
TI_2194646045   .e 1 to 1087 53 to 1126 C163R E235R N236I S237H S238L ... tiling clone,   1074/1126
(95 %)
22 diff
(98.1 %id)
AK308644 cerebellum .f 1 to 1232 2 to 1233 exact tiling clone,   1233/1233
(100 %)
1 diff
(100.0 %id)
DA113230 cerebellum .f 1 to 599 2 to 601 exact capped   600/600
(100 %)
1 diff
(99.9 %id)
AF150435 umbilical cord blood .g-u 1 to 740 4 to 741 exact tiling clone,   741/743
(99 %)
4 diff
(99.5 %id)
AV740447 cord Blood .g-u 1 to 357 50 to 402 exact     356/423
(84 %)
6 diff
(98.6 %id)
TI_2194646461   Gene AP4E1, variant not shown         This clone was ignored    
TI_2194646473   Gene AP4E1, variant not shown         This clone was ignored    
TI_2194646477   Gene AP4E1, variant not shown         This clone was ignored    
BC144025 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones Gene AP4E1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI