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Gene KDM1BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
157 supporting clones for gene KDM1B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BU146681 lymph, lymphoma, cell line .a 1 to 843 4 to 855   tiling clone,   852/921
(92 %)
21 diff
(97.8 %id)
BU429854 lymph .a 561 to 923 1 to 363   tiling clone,   363/363
(100 %)
6 diff
(98.4 %id)
TI_154151072   .a 568 to 1102 80 to 608       529/529
(100 %)
15 diff
(97.2 %id)
DN989821 brain, whole brain .a 610 to 1107 1 to 497       497/497
(100 %)
7 diff
(98.6 %id)
CN293690 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 673 to 1132 1 to 460       460/460
(100 %)
0 diff
(100 %id)
CF272713   .a 744 to 1247 504 to 1     Submitted on the opposite strand 504/504
(100 %)
0 diff
(100 %id)
AK091428 brain .a 751 to 3375 1 to 2625   tiling clone, available from FLJ,   2625/2830
(92 %)
4 diff
(99.9 %id)
AX746977   .a 751 to 3375 1 to 2625       2625/2830
(92 %)
4 diff
(99.9 %id)
DA495872 brain .a 752 to 1325 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DN996727 breast cancer, Mammary gland (cancer tissue) .a 936 to 1548 1 to 610       610/610
(100 %)
7 diff
(98.9 %id)
AW449768   .a 1130 to 1559 445 to 16   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 430/445
(96 %)
0 diff
(100 %id)
BG337767 leiomyosarcoma cell line, uterus .a 1132 to 1772 1 to 641   tiling clone, available from MGC,   641/641
(100 %)
0 diff
(100 %id)
DB085632 testis .a 1247 to 1813 2 to 570   capped   569/569
(100 %)
5 diff
(99.2 %id)
BG981327 colon_normal .a 1261 to 1618 363 to 5       359/363
(98 %)
1 diff
(99.8 %id)
BM928326 brain .a 1796 to 2584 11 to 796       786/1085
(72 %)
14 diff
(98.8 %id)
CR746964 duodenal adenocarcinoma, cell line, small intestine .a 1836 to 2343 12 to 519       508/519
(97 %)
6 diff
(98.9 %id)
BM551086 duodenal adenocarcinoma, cell line, small intestine .a 1837 to 2831 1 to 1020       1020/1065
(95 %)
13 diff
(98.8 %id)
DB315628 brain .a 3043 to 3375 538 to 206       333/538
(61 %)
0 diff
(100 %id)
NM_153042.3   .b 1 to 3874 2 to 3875 exact RefSeq,   3875/3875
(100 %)
0 diff
(100 %id)
DA099422 cerebellum .b 1 to 541 2 to 543   tiling clone, capped   542/542
(100 %)
2 diff
(99.7 %id)
AK125318   .b 64 to 3874 1 to 3811 I419T tiling clone, available from FLJ,   3811/3811
(100 %)
3 diff
(100.0 %id)
DA723411   .b 65 to 378 2 to 315   capped   314/314
(100 %)
1 diff
(99.7 %id)
DA319377 hippocampus .b 74 to 634 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
BG008664 placenta_normal .b 230 to 678 41 to 489       449/489
(91 %)
3 diff
(99.4 %id)
AI270209 colon, moderately-differentiated adenocarcinoma .b 942 to 1020 80 to 1       80/82
(97 %)
1 diff
(98.8 %id)
AA331633 Embryo, 8 weeks .b 1286 to 1496 1 to 211       211/211
(100 %)
0 diff
(100 %id)
AA332652 Embryo, 8 weeks .b 1286 to 1574 1 to 289       289/289
(100 %)
0 diff
(100 %id)
AW999369 breast_normal .b 1312 to 1546 244 to 11     Submitted on the opposite strand 234/244
(95 %)
3 diff
(98.8 %id)
BE170475 head_neck .b 1436 to 1853 416 to 1   tiling clone, Submitted on the opposite strand 416/416
(100 %)
3 diff
(99.3 %id)
AA378845 synovial membrane .b 1441 to 1803 1 to 364       364/365
(99 %)
6 diff
(98.4 %id)
AW964175   .b 1442 to 2136 1 to 692       692/692
(100 %)
16 diff
(97.7 %id)
CR999699 T-Lymphocytes .b 1479 to 2272 9 to 803       795/803
(99 %)
10 diff
(98.8 %id)
BG287819 bladder, transitional cell papilloma, cell line .b 1632 to 2325 1 to 697       697/1122
(62 %)
19 diff
(98.4 %id)
DA293356 hippocampus .b 1664 to 2246 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
AI475221 colon, moderately-differentiated adenocarcinoma .b 1756 to 2023 268 to 1       268/268
(100 %)
3 diff
(98.9 %id)
FN173732 breast carcinoma .b 1950 to 2053 1 to 102       102/105
(97 %)
3 diff
(97.2 %id)
BP292124 lung .b 1982 to 2557 1 to 576       576/576
(100 %)
4 diff
(99.4 %id)
AW363662 colon .b 1992 to 2384 17 to 408       392/408
(96 %)
6 diff
(98.6 %id)
AV654703 corresponding non cancerous liver tissue .b 2133 to 2768 1 to 637   tiling clone, Submitted on the opposite strand 637/640
(99 %)
4 diff
(99.4 %id)
DB324315   .b 3340 to 3868 535 to 7       529/535
(98 %)
0 diff
(100 %id)
BI023752 marrow .c 1 to 349 1 to 352   tiling clone,   352/352
(100 %)
9 diff
(97.5 %id)
CR627410 cervix .c 67 to 3512 1 to 3446 S167G tiling clone, available from DKFZ, AAA   3446/3446
(100 %)
5 diff
(99.9 %id)
AL701214 human skeletal muscle .c 67 to 521 1 to 455       455/455
(100 %)
2 diff
(99.6 %id)
BI029640 marrow .c 186 to 552 1 to 364       364/365
(99 %)
8 diff
(97.9 %id)
DA439724 tongue, tumor tissue .c 978 to 1546 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BF352205 head_neck .c 1394 to 1646 16 to 268   tiling clone,   253/268
(94 %)
6 diff
(97.8 %id)
DB313615 tongue, tumor tissue .c 2969 to 3512 544 to 1       544/544
(100 %)
0 diff
(100 %id)
BX504192 human skeletal muscle .c 3003 to 3512 510 to 1       510/512
(99 %)
0 diff
(100 %id)
AK091217 tongue, tumor tissue .d 1 to 2540 2 to 2541 exact tiling clone, available from FLJ,   2541/2541
(100 %)
1 diff
(100.0 %id)
AX746856   .d 1 to 2540 2 to 2541 exact     2541/2541
(100 %)
1 diff
(100.0 %id)
BE005626 breast_normal .e 1 to 450 46 to 495 exact tiling clone,   452/502
(90 %)
8 diff
(98.5 %id)
BC113093 PCR rescued clones .f 1 to 495 1 to 495 exact tiling clone,   495/495
(100 %)
2 diff
(99.6 %id)
BC126914 PCR rescued clones .f 1 to 496 503 to 8 exact   Submitted on the opposite strand 496/503
(98 %)
2 diff
(99.7 %id)
BM476225 duodenal adenocarcinoma, cell line, small intestine .f 451 to 1497 1 to 1065   tiling clone,   1065/1113
(95 %)
62 diff
(94.5 %id)
DA348375 substantia nigra .f 583 to 1139 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
AJ420481   .f 608 to 2300 10 to 1702   tiling clone, AAA   1693/1702
(99 %)
6 diff
(99.7 %id)
AA013429 eye, retina .f 616 to 997 1 to 387       387/390
(99 %)
9 diff
(97.7 %id)
AA018093 eye, retina .f 616 to 1019 1 to 409       409/411
(99 %)
6 diff
(98.6 %id)
BE893025 melanotic melanoma, skin .f 639 to 990 1 to 351       351/694
(50 %)
2 diff
(99.8 %id)
D81996 brain .f 648 to 902 1 to 255       255/255
(100 %)
3 diff
(98.9 %id)
TI_159712240   .f 717 to 1147 58 to 488     Submitted on the opposite strand 431/1140
(37 %)
4 diff
(99.7 %id)
CB852203 Human Lung Epithelial cells, lung .f 719 to 1134 1 to 416     Submitted on the opposite strand 416/416
(100 %)
2 diff
(99.6 %id)
BF064118 colon, colon tumor, RER+ .f 782 to 1287 508 to 3       506/508
(99 %)
0 diff
(100 %id)
AA814729 germinal center B cell .f 843 to 1263 424 to 4       421/424
(99 %)
0 diff
(100 %id)
BF959763 nervous_normal .f 861 to 1244 402 to 18       385/402
(95 %)
0 diff
(100 %id)
BF110361 carcinoid, lung .f 862 to 1361 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
BF110170 carcinoid, lung .f 862 to 1339 1 to 478     Submitted on the opposite strand 478/478
(100 %)
0 diff
(100 %id)
AI807314 carcinoid, lung .f 866 to 1346 1 to 481     Submitted on the opposite strand 481/481
(100 %)
2 diff
(99.6 %id)
BE219058 carcinoid, lung .f 866 to 1331 1 to 466     Submitted on the opposite strand 466/466
(100 %)
1 diff
(99.8 %id)
AA907342 pooled .f 923 to 1253 329 to 1       329/329
(100 %)
4 diff
(98.8 %id)
BM791171 stomach .f 933 to 1635 1 to 702       702/702
(100 %)
2 diff
(99.8 %id)
BM855391 stomach .f 933 to 1075 1 to 143       143/143
(100 %)
6 diff
(95.9 %id)
R59015 whole brain .f 945 to 1401 1 to 464       464/469
(98 %)
9 diff
(98.1 %id)
CB150515 cervix, Uterine .f 952 to 1556 1 to 604       604/604
(100 %)
2 diff
(99.7 %id)
W96136 eye, retina .f 956 to 1410 1 to 459       459/459
(100 %)
7 diff
(98.5 %id)
AA365027 pineal body .f 971 to 1245 1 to 281   AAA   281/295
(95 %)
8 diff
(97.3 %id)
AL120740 melanoma (MeWo cell line) .f 1031 to 1575 1 to 545       545/545
(100 %)
0 diff
(100 %id)
AA384304 thyroid gland .f 1103 to 1323 1 to 221       221/221
(100 %)
0 diff
(100 %id)
AW956771   .f 1104 to 1789 1 to 680       680/776
(87 %)
27 diff
(96.6 %id)
BM718538 eye, fetal eye .f 1245 to 1781 1 to 537       537/537
(100 %)
0 diff
(100 %id)
AW968638   .f 1271 to 1771 35 to 535   AAA   501/555
(90 %)
3 diff
(99.5 %id)
AA243512 germinal center B cell .f 1271 to 1508 1 to 238       238/238
(100 %)
0 diff
(100 %id)
AA625508 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 1295 to 1683 1 to 390       390/390
(100 %)
7 diff
(98.3 %id)
BX113187 brain, pineal gland .f 1320 to 2101 1 to 784       784/784
(100 %)
3 diff
(99.7 %id)
Z46075 brain, total brain .f 1340 to 1673 1 to 334       334/334
(100 %)
3 diff
(99.2 %id)
H09668 whole brain .f 1348 to 1707 1 to 360       360/360
(100 %)
0 diff
(100 %id)
BE838605 prostate_normal .f 1372 to 1716 1 to 343       343/343
(100 %)
8 diff
(97.7 %id)
BE819059 breast_normal .f 1373 to 1758 387 to 3       385/391
(98 %)
0 diff
(100 %id)
BE830965 marrow .f 1373 to 1758 387 to 1       387/392
(98 %)
2 diff
(99.5 %id)
BE830981 marrow .f 1375 to 1643 316 to 46       271/323
(83 %)
0 diff
(100 %id)
BF359599 marrow .f 1376 to 1745 1 to 367       367/374
(98 %)
9 diff
(97.6 %id)
BE830942 marrow .f 1377 to 1752 11 to 386       376/386
(97 %)
6 diff
(98.5 %id)
BE819058 breast_normal .f 1382 to 1767 387 to 6       382/387
(98 %)
0 diff
(100 %id)
BE830944 marrow .f 1382 to 1695 317 to 3       315/317
(99 %)
0 diff
(100 %id)
BE830955 marrow .f 1382 to 1699 325 to 3       323/325
(99 %)
0 diff
(100 %id)
BE830964 marrow .f 1382 to 1747 366 to 8       359/366
(98 %)
0 diff
(100 %id)
BE830970 marrow .f 1382 to 1685 335 to 30       306/335
(91 %)
0 diff
(100 %id)
BF359604 marrow .f 1382 to 1752 389 to 6       384/389
(98 %)
0 diff
(100 %id)
BE830953 marrow .f 1385 to 1766 1 to 381       381/381
(100 %)
9 diff
(97.7 %id)
BI258916 cervical carcinoma cell line, cervix .f 1390 to 1994 1 to 609       609/744
(81 %)
9 diff
(98.8 %id)
BE838630 prostate_normal .f 1392 to 1740 351 to 4       348/351
(99 %)
0 diff
(100 %id)
TI_154062739   .f 1431 to 2300 957 to 95   AAA   863/990
(87 %)
16 diff
(98.4 %id)
TI_151760607   .f 1431 to 2300 944 to 89   AAA   856/971
(88 %)
21 diff
(97.9 %id)
BE830956 marrow .f 1457 to 1752 9 to 305       297/305
(97 %)
7 diff
(97.8 %id)
CN293881 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 1518 to 1706 1 to 189       189/189
(100 %)
1 diff
(99.5 %id)
TI_149283378   .f 1602 to 2300 778 to 80   AAA   699/700
(99 %)
5 diff
(99.3 %id)
BE669920 carcinoid, lung .f 1617 to 1967 1 to 351   tiling clone, Submitted on the opposite strand 351/351
(100 %)
3 diff
(99.2 %id)
W51746 senescent fibroblast .f 1622 to 2248 1 to 618       618/645
(95 %)
15 diff
(97.7 %id)
BM984039 lung, Primary Lung Epithelial Cells .f 1652 to 2300 667 to 19   AAA   649/649
(100 %)
1 diff
(99.9 %id)
AA479224.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 1670 to 1949 1 to 280     also hits gene SLTM 280/280
(100 %)
2 diff
(99.3 %id)
CA313399 Human Lung Epithelial cells, lung .f 1670 to 2306 656 to 19   AAA   638/638
(100 %)
5 diff
(99.3 %id)
CA421243 Bone, Enchondroma cell line .f 1704 to 2300 615 to 19   AAA   597/597
(100 %)
2 diff
(99.7 %id)
CA442017 lung, Metastatic Chondrosarcoma .f 1718 to 2306 606 to 19   tiling clone, AAA   588/588
(100 %)
2 diff
(99.7 %id)
TI_151702583   .f 1725 to 2301 682 to 104       637/1375
(46 %)
13 diff
(99.1 %id)
BE348688 carcinoid, lung .f 1776 to 2301 527 to 1       527/527
(100 %)
2 diff
(99.7 %id)
AW009229 colon .f 1795 to 2300 520 to 15   AAA   506/506
(100 %)
0 diff
(100 %id)
AW967815   .f 1802 to 2128 331 to 1     Submitted on the opposite strand 331/335
(98 %)
13 diff
(96.2 %id)
BE327545 carcinoid, lung .f 1803 to 2305 502 to 1       502/502
(100 %)
1 diff
(99.9 %id)
AI701401 carcinoid, lung .f 1807 to 2303 497 to 1       497/503
(98 %)
7 diff
(98.7 %id)
BF110067 carcinoid, lung .f 1808 to 2307 501 to 3       499/510
(97 %)
0 diff
(100 %id)
AA479524.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 1809 to 2306 498 to 1     also hits gene TMEM9B 498/498
(100 %)
1 diff
(99.8 %id)
AA833876 germinal center B cell .f 1809 to 2307 508 to 10   tiling clone,   499/508
(98 %)
0 diff
(100 %id)
AI146456 heart .f 1810 to 2301 493 to 1       493/493
(100 %)
1 diff
(99.8 %id)
AW467662 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .f 1810 to 2306 497 to 1       497/497
(100 %)
1 diff
(99.8 %id)
AI301915 2 pooled tumors (clear cell type), Kidney .f 1815 to 2301 491 to 5       487/491
(99 %)
0 diff
(100 %id)
AI094125 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 1821 to 2307 487 to 1       487/488
(99 %)
0 diff
(100 %id)
BQ447117 Knee, Osteoarthritic Cartilage .f 1821 to 2306 504 to 19   AAA   486/488
(99 %)
0 diff
(100 %id)
AA704572 pineal gland .f 1824 to 2307 492 to 9       484/496
(97 %)
0 diff
(100 %id)
AI888253 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .f 1824 to 2307 484 to 1       484/484
(100 %)
0 diff
(100 %id)
AI279176 carcinoid, lung .f 1827 to 2307 481 to 1       481/481
(100 %)
2 diff
(99.6 %id)
AW008795 colon .f 1830 to 2307 477 to 1       477/477
(100 %)
1 diff
(99.8 %id)
AI690198 carcinoid, lung .f 1832 to 2303 472 to 1       472/472
(100 %)
6 diff
(98.8 %id)
AW450692   .f 1844 to 2300 474 to 18   AAA   457/457
(100 %)
2 diff
(99.6 %id)
AW452403   .f 1847 to 2306 477 to 18   AAA   460/460
(100 %)
0 diff
(100 %id)
AA013430 eye, retina .f 1860 to 2305 446 to 1       446/447
(99 %)
3 diff
(99.4 %id)
AA643724 colon, colon tumor RER+ .f 1860 to 2300 441 to 1       441/441
(100 %)
0 diff
(100 %id)
BF448550 fibrotheoma, ovary .f 1866 to 2307 450 to 9       442/450
(98 %)
0 diff
(100 %id)
AI085575 B-cell, chronic lymphotic leukemia .f 1870 to 2301 432 to 1       432/432
(100 %)
2 diff
(99.6 %id)
AI367920 adenocarcinoma, colon .f 1870 to 2306 437 to 1       437/437
(100 %)
0 diff
(100 %id)
AW148516 brain, tumor, 5 pooled (see description) .f 1873 to 2306 433 to 1       433/433
(100 %)
7 diff
(98.4 %id)
AI318367 adenocarcinoma, colon .f 1874 to 2306 433 to 1       433/433
(100 %)
0 diff
(100 %id)
AW471466 adenocarcinoma, Pancreas .f 1874 to 2307 442 to 9       434/442
(98 %)
0 diff
(100 %id)
W96137 eye, retina .f 1877 to 2306 443 to 12   AAA   432/432
(100 %)
2 diff
(99.6 %id)
AI619902 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .f 1882 to 2307 426 to 1       426/426
(100 %)
0 diff
(100 %id)
AA903359 leiomyosarcoma, soft tissue .f 1884 to 2301 426 to 9       418/426
(98 %)
0 diff
(100 %id)
AA479069.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 1894 to 2301 415 to 8     also hits gene HNRNPA2B1 408/415
(98 %)
0 diff
(100 %id)
AA826271 germinal center B cell .f 1915 to 2306 403 to 12   AAA   392/392
(100 %)
0 diff
(100 %id)
AI288643 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 1916 to 2307 399 to 8       392/399
(98 %)
0 diff
(100 %id)
AI241406 liver and spleen .f 1918 to 2306 399 to 11   AAA   389/389
(100 %)
0 diff
(100 %id)
AW467550 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .f 1918 to 2307 397 to 8       390/397
(98 %)
0 diff
(100 %id)
AA018094 eye, retina .f 1931 to 2305 375 to 1       375/375
(100 %)
3 diff
(99.2 %id)
AA860357   .f 1957 to 2301 348 to 4       345/348
(99 %)
0 diff
(100 %id)
AA806981 germinal center B cell .f 1963 to 2307 354 to 10       345/354
(97 %)
0 diff
(100 %id)
AI914192 carcinoid, lung .f 1987 to 2301 317 to 3       315/317
(99 %)
0 diff
(100 %id)
AA243513 germinal center B cell .f 2003 to 2307 304 to 1       304/304
(100 %)
1 diff
(99.7 %id)
AA805523 germinal center B cell .f 2018 to 2306 299 to 11   AAA   289/289
(100 %)
0 diff
(100 %id)
AA426219   .f 2028 to 2306 279 to 1       279/279
(100 %)
0 diff
(100 %id)
T17259   .f 2033 to 2300 268 to 1       268/268
(100 %)
0 diff
(100 %id)
AW129144 brain, tumor, 5 pooled (see description) .f 2043 to 2307 268 to 4       265/268
(98 %)
0 diff
(100 %id)
BX953315   .f 2118 to 2301 1 to 184       184/225
(81 %)
1 diff
(99.6 %id)
AI352041 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .f 2127 to 2307 188 to 7       182/188
(96 %)
0 diff
(100 %id)
DA962177 Spleen .g-u 1 to 552 2 to 557 C53Y M54A I55* tiling clone, capped   556/556
(100 %)
4 diff
(99.3 %id)
BE165023 head_neck Gene KDM1B, variant not shown         Submitted on the opposite strand    
BG748119 eye, normal pigmented retinal epithelium Gene KDM1B, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BG747962 eye, normal pigmented retinal epithelium Gene KDM1B, variant not shown       AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI