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Gene ICA1LTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
150 supporting clones for gene ICA1L back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK092310 brain .a 1 to 3456 2 to 3457 exact tiling clone, available from FLJ,   3457/3457
(100 %)
2 diff
(100.0 %id)
AX747473   .a 1 to 3456 2 to 3457 exact     3457/3457
(100 %)
2 diff
(100.0 %id)
DA776890 brain .a 1 to 570 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA501190 brain .a 216 to 775 7 to 569   capped   561/568
(98 %)
7 diff
(98.8 %id)
DA627155 Kidney .a 217 to 721 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
BX489626   .a 308 to 934 1 to 627       627/632
(99 %)
5 diff
(99.3 %id)
DA241655 brain .a 323 to 916 2 to 595   capped   594/594
(100 %)
0 diff
(100 %id)
DR003675 hippocampus .a 332 to 1053 4 to 722       719/722
(99 %)
9 diff
(98.8 %id)
DB326030 brain .a 2903 to 3456 555 to 1       555/555
(100 %)
2 diff
(99.7 %id)
AK055978   .b 1 to 3198 2 to 3199 M242V tiling clone, available from FLJ,   3199/3199
(100 %)
4 diff
(99.9 %id)
DA683152   .b 1 to 517 2 to 518   capped   517/517
(100 %)
1 diff
(99.9 %id)
DB322751   .b 2656 to 3198 543 to 1       543/543
(100 %)
0 diff
(100 %id)
NM_138468.4   .c 1 to 7996 1 to 7996 exact RefSeq,   7996/7996
(100 %)
0 diff
(100 %id)
AL833904 testis .c 7 to 4073 1 to 4069 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 4069/4069
(100 %)
1 diff
(100.0 %id)
CD244054 testis .c 157 to 947 52 to 846       795/883
(90 %)
12 diff
(98.7 %id)
TI_1948099090   .c 164 to 727 696 to 128       569/1288
(44 %)
21 diff
(98.4 %id)
CV029735 mixed .c 165 to 732 1 to 566       566/609
(92 %)
7 diff
(98.9 %id)
TI_1948099546   .c 165 to 430 127 to 392   fully sequenced,   266/295
(90 %)
6 diff
(98.0 %id)
TI_1948099232   .c 166 to 719 127 to 680   fully sequenced,   554/584
(94 %)
6 diff
(99.0 %id)
DA531675 brain .c 199 to 812 2 to 616   capped   615/615
(100 %)
2 diff
(99.7 %id)
CD696292 normal nasopharynx .c 233 to 685 22 to 475       454/475
(95 %)
7 diff
(98.6 %id)
TI_1948099395   .c 266 to 727 581 to 120       462/489
(94 %)
0 diff
(100 %id)
TI_1948099233   .c 369 to 727 479 to 121   fully sequenced,   359/479
(74 %)
1 diff
(99.8 %id)
TI_1948099547   .c 369 to 727 484 to 126   fully sequenced,   359/484
(74 %)
0 diff
(100 %id)
BP369364 testis .c 371 to 940 1 to 569       569/569
(100 %)
1 diff
(99.9 %id)
DA449338 tongue, tumor tissue .c 377 to 847 2 to 473   capped   472/472
(100 %)
1 diff
(99.8 %id)
AB053317   .c 482 to 2185 1 to 1704       1704/1705
(99 %)
4 diff
(99.8 %id)
CD636423   .c 550 to 1278 1 to 728       728/728
(100 %)
5 diff
(99.4 %id)
BP229754 brain .c 566 to 1149 1 to 583       583/583
(100 %)
6 diff
(99.0 %id)
AA152083 uterus .c 627 to 929 1 to 302       302/485
(62 %)
4 diff
(99.2 %id)
DA737190   .c 655 to 1536 2 to 885   capped   884/884
(100 %)
7 diff
(99.3 %id)
W28101 eye, retina .c 685 to 1200 533 to 17       517/567
(91 %)
10 diff
(98.3 %id)
W28811 eye, retina .c 689 to 1198 512 to 2       511/548
(93 %)
8 diff
(98.6 %id)
BQ301599 bocio_tumor .c 696 to 1278 599 to 10       559/599
(93 %)
17 diff
(97.2 %id)
DA737031   .c 742 to 1462 2 to 725   capped   724/872
(83 %)
9 diff
(99.0 %id)
CD636424   .c 772 to 1320 579 to 17       563/591
(95 %)
21 diff
(96.5 %id)
DA366665 subthalamic nucleus .c 799 to 1361 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BF793908 adrenal cortex carcinoma, cell line, adrenal gland .c 1051 to 1828 1 to 787       787/994
(79 %)
17 diff
(98.3 %id)
BG204004   .c 1069 to 1574 1 to 507       506/803
(63 %)
30 diff
(96.3 %id)
DA281869 corpus callosum .c 1330 to 1849 2 to 522   capped   521/521
(100 %)
5 diff
(99.1 %id)
BG195688   .c 1405 to 1781 1 to 377   AAA   377/377
(100 %)
4 diff
(99.0 %id)
BG203848   .c 1410 to 2062 7 to 659       653/782
(83 %)
12 diff
(98.5 %id)
AW592518 pooled .c 1412 to 1780 371 to 3       369/371
(99 %)
0 diff
(100 %id)
BG211711   .c 1424 to 2163 1 to 739       739/739
(100 %)
15 diff
(98.0 %id)
AU186027 skin .c 1493 to 1692 1 to 200       200/200
(100 %)
0 diff
(100 %id)
Z32897   .c 1513 to 1854 1 to 342       342/342
(100 %)
6 diff
(98.3 %id)
BP265673 thyroid .c 1516 to 2094 1 to 579       579/579
(100 %)
2 diff
(99.7 %id)
N86765   .c 1550 to 1752 1 to 205       205/205
(100 %)
10 diff
(95.2 %id)
AA152043 uterus .c 1643 to 2185 544 to 12   AAA   533/588
(90 %)
11 diff
(98.2 %id)
DA137554 alzheimer cortex .c 1738 to 2305 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
BE543526 cervical carcinoma cell line, cervix .c 1850 to 2633 1 to 758       758/958
(79 %)
35 diff
(96.4 %id)
AA324506 brain, cerebellum .c 1953 to 2185 1 to 233       233/233
(100 %)
0 diff
(100 %id)
AW964726   .c 1954 to 2354 1 to 401       401/401
(100 %)
18 diff
(95.6 %id)
BP212414 cerebrum .c 2363 to 2936 1 to 574       574/574
(100 %)
5 diff
(99.2 %id)
DB369593   .c 2705 to 3247 543 to 1       543/543
(100 %)
2 diff
(99.7 %id)
DB369775   .c 2727 to 3247 527 to 1       527/538
(97 %)
11 diff
(98.0 %id)
DB562155 hypothalamus .c 2823 to 3247 1 to 430   AAA Submitted on the opposite strand 430/430
(100 %)
17 diff
(96.1 %id)
DA157506 amygdala .c 2865 to 3413 2 to 549   capped   548/548
(100 %)
14 diff
(97.5 %id)
DA077951 cerebellum .c 3384 to 3966 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
BF378039 testis_normal .c 3473 to 3813 1 to 340       340/340
(100 %)
3 diff
(99.2 %id)
AU311738.
matches multiple genes
neuroblastoma .c 3490 to 4065 599 to 28     also hits gene plerloby 572/600
(95 %)
0 diff
(100 %id)
BP326246 prostata .c 3522 to 4073 1 to 552   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 552/554
(99 %)
3 diff
(99.5 %id)
AA084197   .c 4009 to 4419 1 to 413   tiling clone,   413/424
(97 %)
10 diff
(97.7 %id)
BE671317 carcinoid, lung .c 4143 to 4503 1 to 361   tiling clone, Submitted on the opposite strand 361/361
(100 %)
4 diff
(98.9 %id)
TI_154107869   .c 4442 to 5175 815 to 83   tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 733/944
(77 %)
1 diff
(99.9 %id)
CA447283 Chondrosarcoma, Left Pelvis .c 4465 to 5175 721 to 12   tiling clone, AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 710/710
(100 %)
1 diff
(99.9 %id)
DB297818 cerebellum .c 4638 to 5170 534 to 1       534/534
(100 %)
2 diff
(99.7 %id)
AW470508 carcinoid, lung .c 4658 to 5168 512 to 1       512/512
(100 %)
4 diff
(99.3 %id)
CK819608 Islets of Langerhans, Pancreas .c 4700 to 5179 484 to 4       481/495
(97 %)
0 diff
(100 %id)
BM129642 Islets of Langerhans, Pancreas .c 4701 to 5179 1 to 480       480/487
(98 %)
3 diff
(99.4 %id)
CK819609 Islets of Langerhans, Pancreas .c 4701 to 5170 1 to 471   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 471/471
(100 %)
2 diff
(99.6 %id)
BE669419 carcinoid, lung .c 4720 to 5177 459 to 2       458/459
(99 %)
0 diff
(100 %id)
N66336 cochlea, ear .c 4734 to 5175 453 to 10       444/490
(90 %)
0 diff
(100 %id)
AI308131 2 pooled tumors (clear cell type), Kidney .c 4737 to 5177 442 to 2       441/442
(99 %)
0 diff
(100 %id)
AW051560 Kidney .c 4740 to 5177 439 to 1       439/439
(100 %)
2 diff
(99.6 %id)
AI298642 carcinoid, lung .c 4744 to 5174 433 to 3       431/433
(99 %)
0 diff
(100 %id)
BM129358 Islets of Langerhans, Pancreas .c 4749 to 5179 435 to 4       432/435
(99 %)
0 diff
(100 %id)
AI693443 carcinoid, lung .c 4774 to 5169 395 to 1       395/395
(100 %)
2 diff
(99.5 %id)
BU753318 placenta .c 4776 to 5178 417 to 15   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 403/403
(100 %)
1 diff
(99.8 %id)
AI334623 2 pooled tumors (clear cell type), Kidney .c 4787 to 5170 384 to 1       384/384
(100 %)
1 diff
(99.8 %id)
AK124756 brain .c 4789 to 7996 1 to 3210   tiling clone, available from FLJ,   3210/3210
(100 %)
4 diff
(99.9 %id)
DA213400 brain .c 4790 to 5345 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
AI282592 Kidney, renal cell tumor .c 4809 to 5175 367 to 1       367/367
(100 %)
1 diff
(99.8 %id)
AI620431 Prostate .c 4809 to 5178 370 to 1       370/370
(100 %)
2 diff
(99.5 %id)
BX093649 Kidney, renal cell tumor .c 4811 to 5175 379 to 15   AAA Possibly primed on the genome, locally A rich (28/28 A in genome downstream of last aligned base) 365/365
(100 %)
3 diff
(99.2 %id)
T23975   .c 4882 to 5177 298 to 2       297/299
(99 %)
0 diff
(100 %id)
DA082967 cerebellum .c 6046 to 6621 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
AA059301 eye, retina .c 6748 to 7016 1 to 269       269/303
(88 %)
8 diff
(97.4 %id)
BM565108 insulinoma, Pancreas .c 6897 to 7455 1 to 559       559/559
(100 %)
5 diff
(99.2 %id)
CK905676 insulinoma, Pancreas .c 6897 to 7482 1 to 586   tiling clone,   586/586
(100 %)
6 diff
(99.0 %id)
BQ581123 insulinoma, Pancreas .c 6897 to 7454 1 to 558   fully sequenced,   558/558
(100 %)
5 diff
(99.2 %id)
AL541960.
matches multiple genes
placenta .c 7093 to 7789 402 to 1101     Possibly primed on the genome, locally A rich (14/16 A in genome downstream of last aligned base), also hits gene PIGY 1025/1108
(92 %)
17 diff
(98.5 %id)
AL544489.
matches multiple genes
placenta, Placenta Cot 25-normalized .c 7093 to 7788 380 to 1084     also hits gene PIGY 1027/1084
(94 %)
35 diff
(96.8 %id)
BX337238.
matches multiple genes
Placenta Cot 25-normalized .c 7093 to 7715 411 to 1043     also hits gene PIGY 956/1043
(91 %)
42 diff
(96.0 %id)
BM512505 insulinoma, Pancreas .c 7384 to 7995 627 to 16   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 612/612
(100 %)
1 diff
(99.9 %id)
BQ549302 insulinoma, Pancreas .c 7424 to 7984 561 to 1   fully sequenced,   561/561
(100 %)
1 diff
(99.9 %id)
CK905675 insulinoma, Pancreas .c 7427 to 7961 537 to 3       535/537
(99 %)
0 diff
(100 %id)
DB297990 cerebellum .c 7449 to 7987 539 to 1   tiling clone,   539/539
(100 %)
0 diff
(100 %id)
DB304555 brain .c 7461 to 7996 537 to 1       537/537
(100 %)
2 diff
(99.7 %id)
AI952330 brain, three pooled meningiomas .c 7604 to 8004 400 to 1   tiling clone,   400/400
(100 %)
2 diff
(99.5 %id)
R42689 whole brain .c 7671 to 8009 345 to 1       345/405
(85 %)
26 diff
(93.6 %id)
EC515744 Prostate .c 7878 to 7982 125 to 20       106/125
(84 %)
0 diff
(100 %id)
DB097704 testis .d 1 to 594 2 to 595   tiling clone, capped   594/594
(100 %)
0 diff
(100 %id)
DA116923 cerebellum .d 4 to 555 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB059639 testis .d 554 to 1100 2 to 548   tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
BX279983 cervix .e 1 to 471 1 to 471       471/471
(100 %)
0 diff
(100 %id)
BC000993 Placenta, choriocarcinoma .e 1 to 876 1 to 876 exact tiling clone, available from MGC, AAA   876/876
(100 %)
0 diff
(100 %id)
BE540319 cervix .e 9 to 615 1 to 609   available from MGC,   609/696
(87 %)
8 diff
(98.9 %id)
AI799206 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .e 526 to 876 374 to 24   AAA   351/351
(100 %)
3 diff
(99.2 %id)
AA774047   .e 548 to 884 339 to 3       337/339
(99 %)
0 diff
(100 %id)
H94622 placenta .e 577 to 844 267 to 1       267/437
(61 %)
4 diff
(99.1 %id)
DA721404   .f 1 to 546 2 to 548   tiling clone, capped   547/566
(96 %)
3 diff
(99.5 %id)
DA490875 brain .f 431 to 1005 2 to 576 exact tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
DA789058 brain .g 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
DA232315 brain .h 1 to 573 2 to 574 exact tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
DA770939 brain .i 1 to 525 2 to 526 S115P tiling clone, capped   525/525
(100 %)
2 diff
(99.7 %id)
DA221401 brain .j 1 to 599 2 to 600   tiling clone, capped   599/599
(100 %)
0 diff
(100 %id)
DA777110 brain .j 154 to 724 2 to 572 exact tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DR003221 fetal brain .k 1 to 419 23 to 442   tiling clone,   424/448
(94 %)
7 diff
(98.5 %id)
DA797631 brain .k 1 to 555 2 to 557 exact tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
DA115096 cerebellum .l 1 to 562 2 to 563 exact tiling clone, capped   562/562
(100 %)
0 diff
(100 %id)
DB241498 trachea .m 1 to 586 2 to 586   tiling clone, capped   585/585
(100 %)
2 diff
(99.7 %id)
DA104821 cerebellum .m 23 to 605 2 to 584   tiling clone, capped   583/583
(100 %)
12 diff
(98.0 %id)
BF887273 testis_normal .m 401 to 758 2 to 365   tiling clone,   364/365
(99 %)
6 diff
(98.4 %id)
CV326811 testis_normal .m 442 to 784 72 to 415       375/415
(90 %)
12 diff
(97.2 %id)
DB320763 Kidney .m 545 to 1076 1 to 533   tiling clone, Submitted on the opposite strand 533/533
(100 %)
1 diff
(99.9 %id)
BF175514 blood .m 689 to 909 1 to 225       225/225
(100 %)
13 diff
(94.3 %id)
BU689994 Human Lung Epithelial cells, lung .m 922 to 1612 709 to 19 exact tiling clone, AAA   691/691
(100 %)
0 diff
(100 %id)
DA788518 brain .n 1 to 581 2 to 586   tiling clone, capped   585/585
(100 %)
5 diff
(99.2 %id)
DA196496 amygdala .n 422 to 991 2 to 571 exact tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DB496884 hypothalamus .o 1 to 488 1 to 488 S61T tiling clone,   488/488
(100 %)
2 diff
(99.6 %id)
NM_178231.2   .o 2 to 965 1 to 964 exact RefSeq,   964/964
(100 %)
0 diff
(100 %id)
BC093902 Brain, cerebellum, PCR rescued clones .o 452 to 834 1 to 383   tiling clone,   383/383
(100 %)
1 diff
(99.8 %id)
BC112235 Brain, cerebellum, PCR rescued clones .o 452 to 825 1 to 374       374/374
(100 %)
1 diff
(99.8 %id)
TI_891527634   .o 479 to 834 409 to 54     Submitted on the opposite strand 356/1259
(28 %)
0 diff
(100 %id)
TI_891527642   .o 479 to 834 410 to 55     Submitted on the opposite strand 356/1250
(28 %)
0 diff
(100 %id)
TI_891527650   .o 479 to 834 90 to 445     Submitted on the opposite strand 356/1265
(28 %)
8 diff
(99.4 %id)
TI_891527658   .o 479 to 834 87 to 442     Submitted on the opposite strand 356/1254
(28 %)
8 diff
(99.4 %id)
TI_1242414680   .o 479 to 843 73 to 437       365/1271
(28 %)
12 diff
(99.1 %id)
TI_1242414682   .o 479 to 843 75 to 439       365/1240
(29 %)
12 diff
(99.1 %id)
TI_1242418588   .o 479 to 843 79 to 443       365/1236
(29 %)
12 diff
(99.1 %id)
BY799177 eye .p-u 1 to 621 1 to 621 exact tiling clone,   621/621
(100 %)
0 diff
(100 %id)
H16543 whole brain .p-u 375 to 851 1 to 482   tiling clone,   482/482
(100 %)
17 diff
(96.5 %id)
DA519182 brain .q 1 to 556 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
DA116541 cerebellum .q 119 to 719 2 to 602 exact tiling clone, capped   601/601
(100 %)
0 diff
(100 %id)
DA128416 cerebellum .r 1 to 586 2 to 587   tiling clone, capped   586/593
(98 %)
3 diff
(99.5 %id)
DA493535 brain .r 131 to 714 2 to 586 exact tiling clone, capped   585/585
(100 %)
1 diff
(99.9 %id)
DA235557 brain .s-u 1 to 603 2 to 605 exact tiling clone, capped   604/604
(100 %)
2 diff
(99.7 %id)
DB080310 testis .t 1 to 574 2 to 575 exact tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
DA076090 cerebellum .u 1 to 564 2 to 565 exact tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
DA221324 brain .u 15 to 377 2 to 364   tiling clone, capped   363/363
(100 %)
1 diff
(99.8 %id)
DA350727 substantia nigra .va 1 to 561 2 to 563 Q74* tiling clone, capped   562/562
(100 %)
11 diff
(98.1 %id)
DA186161 amygdala .vb 1 to 558 2 to 559 exact tiling clone, capped   558/558
(100 %)
0 diff
(100 %id)
DW463081 Liver .vc-u 1 to 321 337 to 17 M2F Y3F S6F L8F N12D tiling clone,   321/364
(88 %)
0 diff
(100 %id)
M78317   .vd-u 1 to 223 1 to 223 D12X S14X tiling clone,   223/223
(100 %)
0 diff
(100 %id)
AB053316   Gene ICA1L, variant not shown         This clone was ignored    
BC063876 testis Gene ICA1L, variant not shown       available from MGC, AAA Suspected internal deletion, this clone was ignored    
DB317719 brain Gene ICA1L, variant not shown         This clone was ignored    
DA531762 brain Gene ICA1L, variant not shown       capped This clone was ignored    
AA897531   Gene ICA1L, variant not shown         This clone was ignored    
DA919902 small intestine Gene ICA1L, variant not shown       capped      
DB331879 small intestine Gene ICA1L, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p-u, .q, .r, .s-u, .t, .u, .va, .vb, .vc-u, .vd-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C