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Gene ALDH6A1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
507 supporting clones for gene ALDH6A1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BG709085 brain, hypothalamus .a -11 to 664 1 to 676       676/676
(100 %)
8 diff
(98.9 %id)
DA498439 brain .a -9 to 565 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA350099 substantia nigra .a -8 to 551 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA519547 brain .a 1 to 550 10 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BP199985 amygdala .a 1 to 575 8 to 582       582/582
(100 %)
8 diff
(98.7 %id)
BP200149 amygdala .a 1 to 575 8 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DB485343 hypothalamus .a 1 to 455 8 to 462       462/462
(100 %)
0 diff
(100 %id)
DB502238 hypothalamus .a 1 to 475 8 to 482       482/482
(100 %)
2 diff
(99.6 %id)
BP274782 Kidney .a 1 to 576 8 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP314026 mammary gland .a 1 to 575 8 to 582       582/582
(100 %)
0 diff
(100 %id)
BP315680 mammary gland .a 1 to 575 8 to 582       582/582
(100 %)
0 diff
(100 %id)
BP347050 brain .a 1 to 575 8 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP359660 mammary gland .a 1 to 563 8 to 573       573/574
(99 %)
12 diff
(98.0 %id)
DA017872 adrenal gland .a 1 to 479 8 to 486   capped   485/486
(99 %)
0 diff
(100 %id)
DA152387 amygdala .a 1 to 586 8 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA163957 amygdala .a 1 to 563 8 to 570   capped   569/571
(99 %)
1 diff
(99.9 %id)
DA178659 amygdala .a 1 to 562 8 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA248289 brain .a 1 to 503 8 to 514   capped   513/513
(100 %)
4 diff
(99.3 %id)
DA254909 caudate nucleus .a 1 to 554 8 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA261459 caudate nucleus .a 1 to 479 8 to 486   capped   485/486
(99 %)
0 diff
(100 %id)
DA316117 hippocampus .a 1 to 537 8 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA349336 substantia nigra .a 1 to 537 8 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DA512763 brain .a 1 to 729 8 to 739   capped   738/738
(100 %)
7 diff
(99.1 %id)
DA922488 small intestine .a 1 to 460 8 to 469   capped   468/468
(100 %)
2 diff
(99.6 %id)
DA922508 small intestine .a 1 to 566 8 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA928231 small intestine .a 1 to 545 8 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB168476 kidney, tumor tissue .a 1 to 580 8 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DA227424 brain .a 1 to 560 5 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
BP276067 Kidney .a 1 to 578 4 to 581       581/581
(100 %)
4 diff
(99.4 %id)
BP360485 thalamus .a 1 to 579 4 to 582       582/582
(100 %)
0 diff
(100 %id)
DA015691 adrenal gland .a 1 to 547 4 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA039719 bladder .a 1 to 562 4 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA079766 cerebellum .a 1 to 574 4 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA099295 cerebellum .a 1 to 543 4 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA100375 cerebellum .a 1 to 544 4 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA158558 amygdala .a 1 to 479 4 to 482   capped   481/482
(99 %)
0 diff
(100 %id)
DA321102 hippocampus .a 1 to 457 4 to 460   capped   459/459
(100 %)
0 diff
(100 %id)
BP279352   .a 1 to 581 3 to 583       583/583
(100 %)
0 diff
(100 %id)
DA627534 Kidney .a 1 to 532 4 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
DB095950 testis .a 1 to 552 4 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB177447 kidney, tumor tissue .a 1 to 553 4 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BP200820 amygdala .a 1 to 581 2 to 582       582/582
(100 %)
0 diff
(100 %id)
BP200848 amygdala .a 1 to 582 2 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP251085 hippocampus .a 1 to 581 2 to 582       582/582
(100 %)
0 diff
(100 %id)
AU076986   .a 1 to 102 2 to 103       103/103
(100 %)
0 diff
(100 %id)
BP383413 ilea mucosa .a 1 to 649 2 to 656       656/664
(98 %)
16 diff
(97.6 %id)
BP275602 Kidney .a 1 to 582 2 to 583       583/583
(100 %)
0 diff
(100 %id)
BP282998 bone marrow .a 1 to 581 2 to 582       582/582
(100 %)
0 diff
(100 %id)
BM764242 myeloma .a 1 to 322 2 to 323       323/323
(100 %)
2 diff
(99.4 %id)
BM764034 myeloma .a 1 to 237 2 to 238       238/238
(100 %)
2 diff
(99.2 %id)
BM849228 myeloma .a 1 to 607 2 to 608       608/608
(100 %)
2 diff
(99.7 %id)
BP350188 brain .a 1 to 582 2 to 583       583/583
(100 %)
0 diff
(100 %id)
BP361181 thalamus .a 1 to 587 2 to 588       588/588
(100 %)
0 diff
(100 %id)
BP361411 thalamus .a 1 to 582 2 to 583       583/583
(100 %)
0 diff
(100 %id)
DA210993 brain .a 1 to 571 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA213094 brain .a 1 to 511 2 to 512   capped   511/511
(100 %)
0 diff
(100 %id)
DA243152 brain .a 1 to 593 2 to 594   tiling clone, capped   593/593
(100 %)
0 diff
(100 %id)
DA254955 caudate nucleus .a 1 to 554 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA319277 hippocampus .a 1 to 571 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA626362 Kidney .a 1 to 571 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA626997 Kidney .a 1 to 558 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA632201 Kidney .a 1 to 582 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA757858   .a 1 to 536 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DA865163 placenta .a 1 to 573 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA913447   .a 1 to 458 2 to 459   capped   458/458
(100 %)
0 diff
(100 %id)
BP357878 mammary gland .a 1 to 582 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP362020 thalamus .a 1 to 583 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DB222604 trachea .a 1 to 567 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA172361 amygdala .a 2 to 479 2 to 479   capped   478/479
(99 %)
0 diff
(100 %id)
BP280669   .a 3 to 589 1 to 588       588/588
(100 %)
3 diff
(99.5 %id)
DA328378 hippocampus .a 4 to 479 2 to 477   capped   476/477
(99 %)
1 diff
(99.8 %id)
DA399719 thalamus .a 4 to 457 2 to 455   capped   454/454
(100 %)
0 diff
(100 %id)
DA426694 colon .a 4 to 573 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA624595 Kidney .a 4 to 542 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA636658 Kidney .a 4 to 589 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DB041168 testis .a 4 to 559 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA255773 caudate nucleus .a 5 to 479 2 to 476   capped   475/476
(99 %)
0 diff
(100 %id)
CB130210 Liver .a 5 to 614 1 to 610       610/610
(100 %)
3 diff
(99.6 %id)
DB184901 liver, tumor tissue .a 7 to 583 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA367779 subthalamic nucleus .a 8 to 558 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BX471074   .a 8 to 223 1 to 216       216/216
(100 %)
1 diff
(99.6 %id)
BG715547 brain, hypothalamus .a 8 to 832 1 to 821       821/821
(100 %)
12 diff
(98.6 %id)
BU597306 mixed (pool of 40 RNAs) .a 8 to 778 1 to 780       780/809
(96 %)
16 diff
(98.1 %id)
BP311069 brain .a 8 to 591 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
DA266957 caudate nucleus .a 9 to 570 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BP218953 caudate nucleus .a 9 to 583 1 to 575       575/580
(99 %)
2 diff
(99.7 %id)
BX503146 Liver .a 9 to 438 1 to 430       430/430
(100 %)
0 diff
(100 %id)
DA283135 corpus callosum .a 10 to 588 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA283151 corpus callosum .a 10 to 598 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
AL597778   .a 10 to 681 1 to 673       673/676
(99 %)
4 diff
(99.5 %id)
AL702713 human skeletal muscle .a 10 to 474 1 to 465       465/465
(100 %)
3 diff
(99.4 %id)
BX645267   .a 10 to 624 1 to 616       616/616
(100 %)
1 diff
(99.9 %id)
AF148505 skin .a 11 to 1782 1 to 1772 exact     1772/1780
(99 %)
2 diff
(99.9 %id)
AK312389 amygdala .a 11 to 1660 1 to 1650 exact     1650/1650
(100 %)
0 diff
(100 %id)
AL711020 human skeletal muscle .a 11 to 498 1 to 488       488/488
(100 %)
0 diff
(100 %id)
BI459602 testis .a 11 to 891 1 to 884       882/905
(97 %)
35 diff
(96.2 %id)
BP292308 lung .a 11 to 592 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BP326563 prostata .a 11 to 591 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA131313 alzheimer cortex .a 12 to 581 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA191527 amygdala .a 12 to 601 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA245050 brain .a 12 to 588 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA345642 substantia nigra .a 12 to 577 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BX472486   .a 12 to 634 1 to 623       623/623
(100 %)
4 diff
(99.4 %id)
BP202418 amygdala .a 13 to 594 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA173248 amygdala .a 13 to 435 2 to 424   capped   423/423
(100 %)
3 diff
(99.3 %id)
BP211957 cerebrum .a 13 to 593 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP212008 cerebrum .a 13 to 595 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DB479512 hippocampus .a 13 to 279 1 to 267       267/267
(100 %)
2 diff
(99.3 %id)
DB500864 hypothalamus .a 13 to 500 1 to 489       489/489
(100 %)
2 diff
(99.6 %id)
BP274333 Kidney .a 13 to 595 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP274673 Kidney .a 13 to 595 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP312191 brain .a 13 to 590 1 to 577       577/582
(99 %)
6 diff
(99.0 %id)
DA106683 cerebellum .a 14 to 557 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA166506 amygdala .a 14 to 536 2 to 525   capped   524/524
(100 %)
1 diff
(99.9 %id)
DA189199 amygdala .a 14 to 592 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA220696 brain .a 14 to 570 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA306186 hippocampus .a 14 to 564 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA622467 Kidney .a 14 to 558 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB187501 liver, tumor tissue .a 14 to 577 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BP216633 corpus callosum .a 15 to 596 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BX498141 Liver .a 15 to 349 1 to 335       335/335
(100 %)
1 diff
(99.8 %id)
BP198996 brain .a 16 to 598 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
AK222687 brain .a 16 to 2042 1 to 2028 E338D     2028/2028
(100 %)
5 diff
(99.8 %id)
BP212575 cerebrum .a 16 to 599 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BP274401 Kidney .a 16 to 597 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP277022 Kidney .a 16 to 583 1 to 568       568/568
(100 %)
0 diff
(100 %id)
DA827896 placenta .a 16 to 683 2 to 681   capped   680/684
(99 %)
16 diff
(97.7 %id)
DA954649 Spleen .a 16 to 579 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
BP342112 stomach mucosa .a 16 to 594 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
DA095910 cerebellum .a 17 to 479 2 to 464   capped   463/464
(99 %)
0 diff
(100 %id)
DA132607 alzheimer cortex .a 17 to 566 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA169365 amygdala .a 17 to 567 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA250753 caudate nucleus .a 17 to 586 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA320865 hippocampus .a 17 to 653 2 to 638   capped   637/637
(100 %)
0 diff
(100 %id)
DA466537   .a 17 to 580 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA538604 Kidney .a 17 to 586 2 to 580   capped   579/579
(100 %)
13 diff
(97.8 %id)
DA622852 Kidney .a 17 to 597 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA626363 Kidney .a 17 to 578 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA876749 Prostate .a 17 to 592 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
CN309048 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 21 to 731 1 to 712       712/712
(100 %)
4 diff
(99.5 %id)
BC004909 Muscle, rhabdomyosarcoma .a 22 to 1853 1 to 1832 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 1832/1832
(100 %)
2 diff
(99.9 %id)
BE297886 muscle, rhabdomyosarcoma .a 22 to 758 27 to 756       730/784
(93 %)
18 diff
(97.8 %id)
CV814587 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 22 to 833 1 to 812       812/812
(100 %)
5 diff
(99.4 %id)
AJ249994 lymphocyte .a 24 to 1782 1 to 1760 exact     1760/1760
(100 %)
1 diff
(100.0 %id)
DB474581 hippocampus .a 24 to 508 1 to 485       485/485
(100 %)
1 diff
(99.8 %id)
AI014668 breast .a 24 to 519 19 to 513     Submitted on the opposite strand 495/513
(96 %)
7 diff
(98.7 %id)
BI553875 brain, hippocampus .a 24 to 643 1 to 620       620/620
(100 %)
4 diff
(99.4 %id)
BG431686 Kidney .a 26 to 732 1 to 704       704/704
(100 %)
6 diff
(99.2 %id)
DN993096 brain, whole brain .a 26 to 728 24 to 726       703/726
(96 %)
6 diff
(99.2 %id)
BP202559 amygdala .a 27 to 608 1 to 583       583/583
(100 %)
12 diff
(98.0 %id)
AL708576 human skeletal muscle .a 27 to 485 1 to 459       459/459
(100 %)
0 diff
(100 %id)
BP275393 Kidney .a 27 to 607 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP275512 Kidney .a 27 to 600 1 to 574       574/574
(100 %)
0 diff
(100 %id)
BP276698 Kidney .a 27 to 609 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA045569 bladder .a 28 to 598 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA132002 alzheimer cortex .a 28 to 570 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA146057 amygdala .a 28 to 586 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA203088 brain .a 28 to 595 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BP223536 colon mucosa .a 28 to 658 1 to 640       640/840
(76 %)
17 diff
(98.0 %id)
DA631090 Kidney .a 28 to 613 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
DB175453 kidney, tumor tissue .a 28 to 590 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB186211 liver, tumor tissue .a 28 to 614 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
TI_44168223   .a 29 to 643 144 to 758       615/758
(81 %)
7 diff
(99.1 %id)
BP276687 Kidney .a 29 to 612 1 to 584       584/584
(100 %)
0 diff
(100 %id)
BP277049 Kidney .a 29 to 591 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
DA324308 hippocampus .a 30 to 568 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
BX501218 Liver .a 31 to 606 1 to 577       577/577
(100 %)
27 diff
(95.4 %id)
DB482198 hippocampus .a 31 to 504 1 to 475       475/475
(100 %)
6 diff
(98.8 %id)
CX755701 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 31 to 765 1 to 725     Submitted on the opposite strand 725/829
(87 %)
14 diff
(98.4 %id)
CN309047 embryonic stem cells, cell lines H1, H7, andH9 .a 33 to 628 1 to 596       596/596
(100 %)
1 diff
(99.9 %id)
BP276811 Kidney .a 33 to 609 1 to 577       577/577
(100 %)
1 diff
(99.9 %id)
DA621473 Kidney .a 34 to 596 2 to 568   capped   567/567
(100 %)
4 diff
(99.3 %id)
DB003119 breast, tumor tissue .a 34 to 571 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DB003133 breast, tumor tissue .a 34 to 579 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DB055480 testis .a 34 to 603 2 to 571   capped   570/571
(99 %)
2 diff
(99.7 %id)
BX642229   .a 36 to 503 1 to 468       468/468
(100 %)
2 diff
(99.6 %id)
AL710119 human skeletal muscle .a 37 to 531 1 to 495       495/495
(100 %)
1 diff
(99.8 %id)
DA144238 amygdala .a 38 to 590 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
BM807934 ovary (pool of 3) .a 38 to 479 69 to 510       442/1447
(30 %)
8 diff
(99.5 %id)
BU156347 melanotic melanoma, skin .a 38 to 876 1 to 851       847/873
(97 %)
15 diff
(98.3 %id)
AU121658 mammary gland .a 38 to 847 2 to 812   capped   811/811
(100 %)
2 diff
(99.8 %id)
CN309050 embryonic stem cells, cell lines H1, H7, andH9 .a 39 to 647 1 to 609       609/609
(100 %)
0 diff
(100 %id)
CN484442 eye .a 39 to 638 1 to 600       600/600
(100 %)
0 diff
(100 %id)
BG825132 muscle, rhabdomyosarcoma .a 39 to 905 1 to 866       866/899
(96 %)
13 diff
(98.6 %id)
BI115427 muscle, rhabdomyosarcoma .a 39 to 699 1 to 667       667/817
(81 %)
11 diff
(98.7 %id)
BE778440.
matches multiple genes
eye, Eye, retinoblastoma, retinoblastoma .a 41 to 712 1 to 693   available from MGC, Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base), also hits gene EEF1A1P5, EEF1A1P6 691/896
(77 %)
51 diff
(94.4 %id)
AK223244 stomach mucosa .a 42 to 1753 1 to 1712 G348R A434V     1712/1712
(100 %)
2 diff
(99.9 %id)
BP341970 stomach mucosa .a 42 to 620 1 to 579       579/579
(100 %)
0 diff
(100 %id)
DA149828 amygdala .a 43 to 625 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
BX500214 Liver .a 45 to 573 1 to 530       530/530
(100 %)
5 diff
(99.1 %id)
BG398714 Kidney .a 45 to 544 1 to 500       500/500
(100 %)
6 diff
(98.8 %id)
BG426636 Kidney .a 45 to 782 1 to 753       753/840
(89 %)
36 diff
(95.8 %id)
BG429087 Kidney .a 45 to 783 1 to 754       754/858
(87 %)
35 diff
(96.0 %id)
DA132246 alzheimer cortex .a 47 to 610 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA532540 brain .a 47 to 617 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB034179 testis .a 47 to 617 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BX489664   .a 48 to 726 1 to 679       679/679
(100 %)
5 diff
(99.3 %id)
TI_1948145675   .a 52 to 650 127 to 730       604/1236
(48 %)
27 diff
(97.9 %id)
TI_1948145676   .a 52 to 700 128 to 786       659/1332
(49 %)
23 diff
(98.3 %id)
TI_1948145986   .a 52 to 649 126 to 726       601/1257
(47 %)
26 diff
(98.0 %id)
TI_1948145987   .a 52 to 701 124 to 778       655/1299
(50 %)
22 diff
(98.4 %id)
TI_1948146300   .a 52 to 643 130 to 724       595/1271
(46 %)
19 diff
(98.6 %id)
TI_1948146617   .a 52 to 723 128 to 805       678/1288
(52 %)
20 diff
(98.5 %id)
TI_1948146618   .a 52 to 982 126 to 1072       923/1164
(79 %)
39 diff
(96.7 %id)
AF159889 Liver .a 53 to 1782 1 to 1730 exact     1730/1738
(99 %)
1 diff
(100.0 %id)
CN309049 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 53 to 631 1 to 580       580/580
(100 %)
4 diff
(99.4 %id)
CV026108 mixed .a 53 to 703 1 to 649       649/652
(99 %)
3 diff
(99.6 %id)
BM548124 brain, hippocampus .a 53 to 905 18 to 874       857/1091
(78 %)
14 diff
(98.8 %id)
CD171641 testis .a 53 to 888 27 to 869       843/884
(95 %)
18 diff
(98.0 %id)
CB157814 Liver .a 54 to 239 1 to 186       186/203
(91 %)
5 diff
(97.6 %id)
BP217502 caudate nucleus .a 63 to 651 1 to 589       589/589
(100 %)
1 diff
(99.9 %id)
AF038011   .a 74 to 474 1 to 401       401/401
(100 %)
2 diff
(99.6 %id)
BE888919 leiomyosarcoma, uterus .a 74 to 784 1 to 715       715/777
(92 %)
10 diff
(98.8 %id)
CN309046 embryonic stem cells, DMSO-treated H9 cellline .a 86 to 834 1 to 752       752/754
(99 %)
4 diff
(99.5 %id)
BX416628 neuroblastoma .a 98 to 1076 1 to 968       966/982
(98 %)
21 diff
(97.9 %id)
BP201163 amygdala .a 101 to 563 118 to 581       581/581
(100 %)
1 diff
(99.9 %id)
BC032371 Brain, adult medulla .a 101 to 1936 148 to 1983 exact available from MGC, AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 1983/1983
(100 %)
1 diff
(100.0 %id)
DA065292 cerebellum .a 101 to 445 130 to 474   capped   473/473
(100 %)
1 diff
(99.8 %id)
DA275263 corpus callosum .a 101 to 518 130 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB467596 hippocampus .a 101 to 431 143 to 472       472/472
(100 %)
2 diff
(99.6 %id)
BG709612 brain, hypothalamus .a 101 to 850 116 to 860       860/867
(99 %)
20 diff
(97.7 %id)
BI519940 brain, medulla .a 101 to 782 146 to 840       840/991
(84 %)
38 diff
(96.2 %id)
TI_43963952   .a 101 to 782 179 to 873       840/1024
(82 %)
32 diff
(96.9 %id)
NM_005589.2   .a 101 to 2136 148 to 2183 exact RefSeq,   2183/2183
(100 %)
0 diff
(100 %id)
BP311793 brain .a 101 to 544 138 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA869920 Prostate .a 101 to 526 118 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
CB152989 brain .a 129 to 754 1 to 626       626/626
(100 %)
1 diff
(99.9 %id)
TI_1948146301   .a 166 to 781 244 to 866       594/1221
(48 %)
43 diff
(96.5 %id)
BP349749 brain .a 170 to 748 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
BG433772 Kidney .a 181 to 838 1 to 660       660/660
(100 %)
4 diff
(99.4 %id)
BU570440 testis .a 183 to 905 1 to 732       732/827
(88 %)
15 diff
(98.2 %id)
BJ995109 hepatoblastoma .a 237 to 836 1 to 600       600/600
(100 %)
0 diff
(100 %id)
BM558219 astrocytoma grade IV, cell line, brain .a 242 to 1193 1 to 958       958/1040
(92 %)
15 diff
(98.6 %id)
DA135546 alzheimer cortex .a 256 to 793 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
C03520 heart .a 258 to 545 1 to 294       294/294
(100 %)
7 diff
(97.7 %id)
AV655903 corresponding non cancerous liver tissue .a 308 to 948 1 to 641     Submitted on the opposite strand 641/641
(100 %)
6 diff
(99.1 %id)
BM905952 leiomyosarcoma, uterus .a 310 to 1351 1 to 1033       1035/1033
(100 %)
27 diff
(97.4 %id)
BF685519 leiomyosarcoma cell line, uterus .a 338 to 1056 1 to 716       716/999
(71 %)
17 diff
(98.3 %id)
M93405 Liver .a 368 to 1782 1 to 1415       1415/1423
(99 %)
1 diff
(100.0 %id)
BE544182 cervical carcinoma cell line, cervix .a 375 to 990 1 to 622       622/623
(99 %)
18 diff
(97.2 %id)
BF727304 eye, lens .a 395 to 1034 1 to 640       640/640
(100 %)
5 diff
(99.3 %id)
CB111899 Liver .a 397 to 1032 11 to 646       638/646
(98 %)
7 diff
(99.0 %id)
F07330 brain, total brain .a 402 to 690 1 to 289       289/289
(100 %)
4 diff
(98.7 %id)
BP249915 hippocampus .a 406 to 988 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP336134 coronary artery .a 417 to 999 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
BP277250 Kidney .a 424 to 983 1 to 564       564/566
(99 %)
20 diff
(96.5 %id)
F06759 brain, total brain .a 431 to 782 1 to 352       352/360
(97 %)
0 diff
(100 %id)
BG432917 Kidney .a 442 to 1215 1 to 764       764/771
(99 %)
21 diff
(97.3 %id)
BQ340988 nervous_normal .a 463 to 849 397 to 13       385/397
(96 %)
0 diff
(100 %id)
EC551008 Prostate .a 470 to 557 1 to 88       88/88
(100 %)
0 diff
(100 %id)
EC465826 Prostate .a 481 to 569 89 to 1       89/89
(100 %)
0 diff
(100 %id)
BM353847 Pancreas, Purified pancreatic islet .a 488 to 1110 17 to 639       623/640
(97 %)
7 diff
(99.0 %id)
CK821493 Pancreas, Purified pancreatic islet .a 525 to 1123 1 to 599     Submitted on the opposite strand 599/599
(100 %)
0 diff
(100 %id)
BG399757 Kidney .a 527 to 1247 1 to 722       722/801
(90 %)
12 diff
(98.6 %id)
BQ376242 testis_normal .a 547 to 1199 652 to 2       651/652
(99 %)
2 diff
(99.7 %id)
BG429916 Kidney .a 550 to 1226 1 to 675       675/675
(100 %)
2 diff
(99.8 %id)
TI_1948146620   .a 576 to 1673 1224 to 125       1100/1344
(81 %)
78 diff
(94.2 %id)
TI_43961516   .a 644 to 1458 65 to 889       825/1017
(81 %)
36 diff
(96.5 %id)
BI489698 pooled brain, lung, testis .a 646 to 1458 1 to 823       823/951
(86 %)
32 diff
(96.7 %id)
BM474732 eye, retinoblastoma .a 649 to 1453 1 to 809       809/1089
(74 %)
16 diff
(98.6 %id)
BM548246 brain, hippocampus .a 649 to 1461 13 to 829       817/1093
(74 %)
16 diff
(98.6 %id)
CD620876   .a 656 to 1329 13 to 684       672/684
(98 %)
15 diff
(97.9 %id)
TI_1948146619   .a 676 to 1673 1127 to 117       1011/1237
(81 %)
28 diff
(97.8 %id)
EC536359 Prostate .a 755 to 847 1 to 93       93/94
(98 %)
1 diff
(99.0 %id)
EC571290 Prostate .a 755 to 847 1 to 91       91/92
(98 %)
2 diff
(97.9 %id)
BX395069 Neuroblastoma Cot 25-normalized .a 777 to 1719 1 to 943       943/943
(100 %)
11 diff
(98.9 %id)
TI_1948145678   .a 779 to 1673 1011 to 119       893/1365
(65 %)
27 diff
(98.1 %id)
DA117317 cerebellum .a 783 to 1325 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
AI201369   .a 786 to 979 210 to 18       193/210
(91 %)
1 diff
(99.6 %id)
BG426491 Kidney .a 789 to 1458 1 to 672       672/679
(98 %)
8 diff
(98.9 %id)
DA497261 brain .a 794 to 1359 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CD620877   .a 800 to 1500 705 to 1       705/705
(100 %)
10 diff
(98.6 %id)
TI_1948146303   .a 809 to 1673 987 to 115       873/1402
(62 %)
24 diff
(98.3 %id)
BQ376205 testis_normal .a 814 to 1199 1 to 385       385/385
(100 %)
5 diff
(98.8 %id)
BQ380412 uterus_tumor .a 816 to 1197 13 to 395       383/397
(96 %)
7 diff
(98.3 %id)
BQ376204 testis_normal .a 817 to 1199 1 to 380       380/380
(100 %)
10 diff
(97.4 %id)
BQ376412 testis_normal .a 817 to 1171 357 to 4       354/357
(99 %)
2 diff
(99.5 %id)
BQ376415 testis_normal .a 817 to 1199 379 to 1       379/379
(100 %)
9 diff
(97.7 %id)
BQ380569 uterus_tumor .a 819 to 993 1 to 173       173/174
(99 %)
7 diff
(96.0 %id)
BU657769 blood .a 837 to 1412 6 to 581       576/581
(99 %)
8 diff
(98.7 %id)
BF205101 muscle, rhabdomyosarcoma .a 858 to 1643 1 to 776       776/783
(99 %)
21 diff
(97.4 %id)
BG827170 muscle, rhabdomyosarcoma .a 858 to 1337 1 to 480       480/480
(100 %)
1 diff
(99.8 %id)
TI_1948146302   .a 904 to 1673 880 to 106       775/1361
(56 %)
20 diff
(98.6 %id)
F07638 brain, total brain .a 1019 to 1357 1 to 341       341/341
(100 %)
2 diff
(99.5 %id)
TI_149315491   .a 1034 to 1943 992 to 89   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 904/992
(91 %)
18 diff
(98.2 %id)
BG743099 skin .a 1039 to 1900 1 to 859       859/859
(100 %)
4 diff
(99.6 %id)
T77566 liver and spleen .a 1046 to 1415 1 to 378       378/381
(99 %)
15 diff
(96.1 %id)
BF678322 Prostate .a 1053 to 1685 1 to 629       629/635
(99 %)
11 diff
(98.3 %id)
EL946624 eyeball .a 1071 to 1624 19 to 572       554/572
(96 %)
8 diff
(98.7 %id)
BP240836 Liver .a 1089 to 1657 1 to 571       573/571
(100 %)
8 diff
(98.6 %id)
BU162020 melanotic melanoma, skin .a 1092 to 1887 1 to 799       799/799
(100 %)
6 diff
(99.3 %id)
TI_1948145677   .a 1092 to 1673 691 to 112       580/1250
(46 %)
6 diff
(99.6 %id)
DA854537 placenta .a 1106 to 1665 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BE501744 Kidney .a 1117 to 1681 582 to 18   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 565/565
(100 %)
0 diff
(100 %id)
TI_1948145988   .a 1132 to 1673 665 to 118       548/1427
(38 %)
13 diff
(99.1 %id)
AL579565.
matches multiple genes
T cells (Jurkat cell line), T cells from T cell leukemia .a 1155 to 1901 751 to 1     also hits gene FIBP 751/751
(100 %)
31 diff
(95.9 %id)
AW269234 Kidney .a 1176 to 1513 1 to 345     Submitted on the opposite strand 343/400
(85 %)
7 diff
(98.3 %id)
AA915881 adenocarcinoma, colon .a 1178 to 1681 500 to 1       500/512
(97 %)
14 diff
(97.3 %id)
AV723523 hypothalamus .a 1180 to 1793 11 to 614       604/614
(98 %)
14 diff
(97.8 %id)
FN113474 breast carcinoma .a 1204 to 1304 99 to 1     Submitted on the opposite strand 99/101
(98 %)
6 diff
(94.1 %id)
T99922 liver and spleen .a 1209 to 1538 1 to 335       335/438
(76 %)
10 diff
(97.8 %id)
CR738019 liver and spleen .a 1211 to 1398 11 to 198       188/206
(91 %)
10 diff
(95.2 %id)
AW241749 pooled .a 1229 to 1687 462 to 3       458/462
(99 %)
8 diff
(98.3 %id)
T81182 liver and spleen .a 1235 to 1387 1 to 153       153/157
(97 %)
3 diff
(98.1 %id)
FN132356 breast carcinoma .a 1238 to 1346 1 to 109       109/109
(100 %)
0 diff
(100 %id)
R90983 liver and spleen .a 1244 to 1639 1 to 401   fully sequenced,   401/401
(100 %)
2 diff
(99.6 %id)
R96256 liver and spleen .a 1244 to 1683 1 to 446   fully sequenced,   446/446
(100 %)
4 diff
(99.2 %id)
BQ045369 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1249 to 1943 713 to 19   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 695/695
(100 %)
1 diff
(99.9 %id)
AI569485 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 1275 to 1682 408 to 1       408/408
(100 %)
0 diff
(100 %id)
BI490700 pooled brain, lung, testis .a 1275 to 1896 638 to 1       638/777
(82 %)
35 diff
(95.5 %id)
TI_43961518   .a 1275 to 1896 638 to 1       638/777
(82 %)
35 diff
(95.5 %id)
DA511420 brain .a 1290 to 1834 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
T27811 colon, endothelial .a 1303 to 1509 1 to 208       208/212
(98 %)
2 diff
(99.1 %id)
CR736968 melanocyte .a 1305 to 2011 1 to 707   tiling clone,   707/707
(100 %)
0 diff
(100 %id)
N77107 multiple sclerosis lesions .a 1311 to 1633 1 to 328     Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 328/328
(100 %)
7 diff
(97.9 %id)
R94546 liver and spleen .a 1330 to 1741 1 to 424       424/433
(97 %)
17 diff
(96.1 %id)
FN078528 breast carcinoma .a 1338 to 1408 1 to 69       69/69
(100 %)
5 diff
(92.8 %id)
AI640855 Kidney .a 1371 to 2133 764 to 1       764/805
(94 %)
36 diff
(95.6 %id)
CV392847 nervous_normal .a 1372 to 1798 1 to 427       427/427
(100 %)
2 diff
(99.6 %id)
BQ338601 nervous_normal .a 1374 to 1798 10 to 432       423/432
(97 %)
9 diff
(98.0 %id)
CV391593 nervous_normal .a 1374 to 1755 9 to 390       382/390
(97 %)
8 diff
(98.0 %id)
CV391377 nervous_normal .a 1376 to 1614 239 to 1     Submitted on the opposite strand 239/239
(100 %)
0 diff
(100 %id)
BM150713 leukopheresis .a 1414 to 1944 550 to 19       532/550
(96 %)
0 diff
(100 %id)
BQ350013 head_neck .a 1433 to 1754 328 to 8       321/328
(97 %)
0 diff
(100 %id)
AW418653 pooled .a 1461 to 2136 675 to 1       675/675
(100 %)
8 diff
(98.9 %id)
BQ016704 lung, Lung Focal Fibrosis .a 1462 to 2131 688 to 19   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 670/670
(100 %)
2 diff
(99.8 %id)
DB478114 hippocampus .a 1482 to 1988 1 to 507       507/507
(100 %)
2 diff
(99.7 %id)
AA515265 colon .a 1501 to 1943 443 to 1       443/443
(100 %)
1 diff
(99.8 %id)
AI859300 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 1507 to 2127 619 to 1       619/619
(100 %)
8 diff
(98.8 %id)
BM353576 Pancreas, Purified pancreatic islet .a 1514 to 2125 612 to 1       612/612
(100 %)
1 diff
(99.9 %id)
BF090107 nervous_normal .a 1523 to 1798 13 to 288       276/288
(95 %)
6 diff
(98.0 %id)
DA416591 thalamus .a 1524 to 2084 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
AI590248 bone marrow, CD34+, T negative, patient with chronicmyelogenous leukemia .a 1526 to 1684 15 to 173   AAA Submitted on the opposite strand 159/175
(90 %)
14 diff
(92.0 %id)
AI590254 bone marrow, CD34+, T negative, patient with chronicmyelogenous leukemia .a 1526 to 1685 15 to 174   AAA Submitted on the opposite strand 160/174
(91 %)
10 diff
(94.3 %id)
BF063650 colon, colon tumor, RER+ .a 1550 to 1944 395 to 1       395/419
(94 %)
17 diff
(96.0 %id)
T77530 liver and spleen .a 1554 to 1873 326 to 3       324/510
(63 %)
0 diff
(100 %id)
AA975064 Kidney .a 1554 to 2132 576 to 1       576/593
(97 %)
9 diff
(98.5 %id)
AI244211 Kidney .a 1554 to 2124 566 to 1       566/590
(95 %)
16 diff
(97.3 %id)
AW105049 pooled .a 1554 to 1944 395 to 6       390/420
(92 %)
0 diff
(100 %id)
BF509180   .a 1554 to 1936 400 to 18   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 383/396
(96 %)
2 diff
(99.5 %id)
CK821494 Pancreas, Purified pancreatic islet .a 1554 to 2129 579 to 4     Submitted on the opposite strand 576/588
(97 %)
0 diff
(100 %id)
DB372252 placenta .a 1555 to 1853 298 to 1       298/306
(97 %)
9 diff
(97.1 %id)
BE150988 head_neck .a 1556 to 1773 13 to 232       220/243
(90 %)
7 diff
(97.2 %id)
AI033618 parathyroid gland, parathyroid tumor .a 1556 to 2137 584 to 1       584/584
(100 %)
12 diff
(98.0 %id)
DB360808 mammary gland .a 1558 to 2114 569 to 11       559/569
(98 %)
0 diff
(100 %id)
AI245768 Kidney .a 1574 to 1780 202 to 1       202/202
(100 %)
25 diff
(87.7 %id)
BF476119 Kidney .a 1589 to 2131 543 to 1       543/543
(100 %)
6 diff
(98.9 %id)
BJ995110 hepatoblastoma .a 1594 to 2088 495 to 1       495/495
(100 %)
1 diff
(99.8 %id)
R88727 liver and spleen .a 1609 to 1933 329 to 2   fully sequenced,   328/329
(99 %)
5 diff
(98.5 %id)
DB551061 hippocampus .a 1621 to 2139 1 to 519     Submitted on the opposite strand 519/519
(100 %)
4 diff
(99.3 %id)
AA947146 Kidney .a 1621 to 2132 502 to 1       502/502
(100 %)
61 diff
(87.9 %id)
AI245769 Kidney .a 1636 to 2124 485 to 1       485/500
(97 %)
16 diff
(96.8 %id)
AA746197 Kidney .a 1639 to 2135 495 to 1       495/495
(100 %)
18 diff
(96.4 %id)
BF963147 nervous_normal .a 1652 to 1798 1 to 145       145/145
(100 %)
4 diff
(97.3 %id)
AI284301 Kidney .a 1652 to 2131 474 to 1       474/478
(99 %)
12 diff
(97.5 %id)
R96205 liver and spleen .a 1656 to 1924 272 to 1   fully sequenced,   272/272
(100 %)
7 diff
(97.5 %id)
BF958701 nervous_normal .a 1669 to 1800 1 to 130       130/142
(91 %)
6 diff
(95.8 %id)
DB573445 hypothalamus .a 1681 to 2146 1 to 466   tiling clone, Submitted on the opposite strand 466/466
(100 %)
1 diff
(99.8 %id)
BF963143 nervous_normal .a 1685 to 1807 124 to 2       123/133
(92 %)
0 diff
(100 %id)
G36768   .a 1729 to 2114 430 to 45   AAA Submitted on the opposite strand 386/388
(99 %)
9 diff
(97.7 %id)
N62179 multiple sclerosis lesions .a 1729 to 2114 430 to 45   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 386/388
(99 %)
9 diff
(97.7 %id)
AI140793 pooled .a 1732 to 2131 414 to 15   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 400/400
(100 %)
1 diff
(99.8 %id)
AI263103 Kidney .a 1734 to 2131 398 to 1       398/436
(91 %)
6 diff
(98.7 %id)
BQ375467 testis_normal .a 1744 to 2175 440 to 10   tiling clone,   431/440
(97 %)
0 diff
(100 %id)
BF510298   .a 1757 to 2148 392 to 1       392/402
(97 %)
0 diff
(100 %id)
R00273 liver and spleen .a 1769 to 2134 376 to 1       376/379
(99 %)
24 diff
(93.7 %id)
AW300296 Kidney .a 1779 to 2130 352 to 1       352/352
(100 %)
10 diff
(97.2 %id)
AL119597 amygdala .a 1793 to 2062 1 to 270       270/270
(100 %)
2 diff
(99.3 %id)
F03026 brain, total brain .a 1809 to 2114 305 to 1       305/305
(100 %)
7 diff
(97.8 %id)
FN130428 breast carcinoma .a 1814 to 1918 1 to 105       105/105
(100 %)
0 diff
(100 %id)
T15874   .a 1838 to 2131 293 to 1       293/293
(100 %)
13 diff
(95.6 %id)
F03891 brain, total brain .a 1870 to 2114 244 to 1       244/244
(100 %)
3 diff
(98.8 %id)
R94547 liver and spleen .a 1911 to 2114 208 to 1       208/208
(100 %)
9 diff
(95.7 %id)
T80779 liver and spleen .a 1995 to 2134 139 to 1       139/139
(100 %)
5 diff
(96.5 %id)
AK294243 amygdala .b 1 to 1868 2 to 1869 R101C E199K Y447H tiling clone,   1869/1869
(100 %)
7 diff
(99.7 %id)
DC314114 amygdala .b 1 to 497 2 to 498       498/498
(100 %)
1 diff
(99.8 %id)
DB166098 thyroid gland .b 908 to 1649 2 to 743   tiling clone, capped   742/742
(100 %)
4 diff
(99.5 %id)
AF130089 Liver .b 1581 to 3216 1635 to 1   tiling clone, Submitted on the opposite strand 1635/2144
(76 %)
13 diff
(99.4 %id)
H63937 liver and spleen .b 1679 to 2148 1 to 475   fully sequenced,   475/475
(100 %)
16 diff
(96.7 %id)
BQ049473 lymph, lymphoma, cell line .b 1688 to 2373 13 to 705   tiling clone,   693/907
(76 %)
20 diff
(97.8 %id)
BG430033 Kidney .b 1730 to 2314 41 to 622       582/622
(93 %)
6 diff
(99.1 %id)
DB099967 testis .b 1748 to 2329 2 to 583   tiling clone, capped   582/582
(100 %)
3 diff
(99.5 %id)
AI796554 Kidney .b 1749 to 2096 348 to 1       348/348
(100 %)
6 diff
(98.3 %id)
BF195851 Kidney .b 1749 to 2096 348 to 1       348/348
(100 %)
6 diff
(98.3 %id)
BE928574 colon .b 1786 to 2113 336 to 8       329/336
(97 %)
0 diff
(100 %id)
CB047620 Kidney .b 1792 to 1873 4 to 85   fully sequenced, AAA   82/85
(96 %)
5 diff
(94.2 %id)
BF592131 Kidney .b 1796 to 2085 290 to 1       290/290
(100 %)
3 diff
(99.0 %id)
AI203767 lung .b 1804 to 2096 293 to 1   tiling clone,   293/293
(100 %)
1 diff
(99.7 %id)
AA865645 2 pooled tumors (clear cell type), Kidney .b 1817 to 2097 280 to 1       280/280
(100 %)
6 diff
(97.9 %id)
CA428937 Cell Line, Chondrosarcoma .b 1832 to 2092 278 to 18   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 261/261
(100 %)
0 diff
(100 %id)
CB047619 Kidney .b 1843 to 2120 275 to 1   fully sequenced,   275/275
(100 %)
16 diff
(94.2 %id)
DA177726 amygdala .b 2072 to 2623 2 to 552   tiling clone, capped   551/551
(100 %)
2 diff
(99.7 %id)
N55518 liver and spleen .b 2074 to 2499 433 to 1       433/433
(100 %)
8 diff
(98.2 %id)
H63534 liver and spleen .b 2118 to 2492 388 to 8   fully sequenced,   381/388
(98 %)
16 diff
(95.9 %id)
BF105130 Kidney .b 2313 to 2834 1 to 524       524/524
(100 %)
24 diff
(95.5 %id)
BX509484   .b 2375 to 3126 1 to 750   tiling clone,   750/750
(100 %)
3 diff
(99.6 %id)
DA149097 amygdala .b 2381 to 2947 2 to 568   capped   567/567
(100 %)
6 diff
(99.0 %id)
BM904488 leiomyosarcoma, uterus .b 2454 to 3104 1 to 651       651/1103
(59 %)
3 diff
(99.8 %id)
DA354176 substantia nigra .b 2464 to 3034 2 to 572   capped   571/571
(100 %)
9 diff
(98.5 %id)
CA454910   .b 2474 to 3332 1 to 868       868/873
(99 %)
17 diff
(98.1 %id)
AI174827 Liver .b 2529 to 3216 687 to 1       687/687
(100 %)
6 diff
(99.2 %id)
DA353061 substantia nigra .b 2531 to 3084 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
BQ776313 Bone, Human Chondrosarcoma Cell Line .b 2550 to 3200 1 to 649     Submitted on the opposite strand 649/649
(100 %)
6 diff
(99.1 %id)
DA635673 Kidney .b 2556 to 3123 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA158023 amygdala .b 2624 to 3157 2 to 535   capped   534/534
(100 %)
19 diff
(96.5 %id)
BG402648 Kidney .b 2650 to 3110 1 to 461   AAA   461/480
(96 %)
7 diff
(98.6 %id)
AA687084   .b 2685 to 2975 43 to 333       291/333
(87 %)
6 diff
(98.2 %id)
N83628   .b 2742 to 2981 1 to 236       236/236
(100 %)
6 diff
(97.5 %id)
BE880183 large cell carcinoma, undifferentiated, lung .b 2745 to 3464 1 to 716       716/869
(82 %)
50 diff
(94.3 %id)
AA196160   .b 2749 to 3159 1 to 427       427/427
(100 %)
20 diff
(95.4 %id)
BF508882   .b 2788 to 3102 332 to 18   AAA   315/321
(98 %)
5 diff
(98.5 %id)
BF509202   .b 2788 to 3102 332 to 18   AAA   315/321
(98 %)
5 diff
(98.5 %id)
BF510230   .b 2788 to 3102 332 to 18   AAA   315/321
(98 %)
5 diff
(98.5 %id)
AA935824 Kidney .b 2791 to 3102 312 to 1       312/312
(100 %)
2 diff
(99.4 %id)
BG697983 skin .b 2829 to 3199 1 to 371       371/1027
(36 %)
9 diff
(99.2 %id)
BE887161 leiomyosarcoma, uterus .b 2838 to 3487 1 to 674       674/783
(86 %)
33 diff
(95.8 %id)
EH335564   .b 2935 to 3007 1 to 73       73/73
(100 %)
3 diff
(95.9 %id)
DA129561 alzheimer cortex .b 2981 to 3502 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
T19816   .b 2988 to 3157 1 to 170       170/170
(100 %)
0 diff
(100 %id)
DA570852 whole embryo, mainly head .b 3017 to 3755 2 to 739   tiling clone, capped   738/738
(100 %)
2 diff
(99.8 %id)
DB382035 thyroid gland .b 3104 to 3654 544 to 1       544/544
(100 %)
10 diff
(98.2 %id)
TI_149276751   .b 3149 to 3654 590 to 85   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 506/692
(73 %)
4 diff
(99.5 %id)
BU677401 lung, Primary Lung Epithelial Cells .b 3149 to 3654 522 to 17   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 506/527
(96 %)
4 diff
(99.3 %id)
CA429701 Cell Line, Chondrosarcoma .b 3157 to 3654 515 to 18   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 498/534
(93 %)
3 diff
(99.5 %id)
AA196287   .b 3172 to 3654 485 to 1       485/485
(100 %)
6 diff
(98.8 %id)
BI439760 Pancreas, Purified pancreatic islet .b 3174 to 3679 1 to 506     Submitted on the opposite strand 506/506
(100 %)
1 diff
(99.9 %id)
N49298 liver and spleen .b 3179 to 3584 1 to 406     Submitted on the opposite strand 406/406
(100 %)
1 diff
(99.8 %id)
AW024959 Kidney .b 3211 to 3654 444 to 1       444/446
(99 %)
11 diff
(97.6 %id)
N49540 liver and spleen .b 3235 to 3634 405 to 1   AAA Submitted on the opposite strand 405/480
(84 %)
11 diff
(97.8 %id)
DB543407 hippocampus .b 3275 to 3749 1 to 474     Submitted on the opposite strand 474/474
(100 %)
2 diff
(99.6 %id)
BF849123 lung_normal .b 3298 to 3733 18 to 450       433/457
(94 %)
15 diff
(96.8 %id)
BQ024338 placenta .b 3299 to 3654 372 to 17   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 356/356
(100 %)
1 diff
(99.8 %id)
AL046487 testis .b 3301 to 3768 1 to 469       469/472
(99 %)
9 diff
(98.1 %id)
AA015749 eye, retina .b 3323 to 3654 335 to 1       335/437
(76 %)
5 diff
(98.9 %id)
R70107.
matches multiple genes
placenta .b 3325 to 3655 337 to 1     also hits gene RASA1 337/340
(99 %)
9 diff
(97.4 %id)
AA855090 parathyroid gland, parathyroid tumor .b 3327 to 3647 1 to 321     Submitted on the opposite strand 321/321
(100 %)
15 diff
(95.4 %id)
AA878955 Kidney .b 3341 to 3631 1 to 291     Submitted on the opposite strand 291/291
(100 %)
0 diff
(100 %id)
DB563046 hypothalamus .b 3356 to 3790 1 to 438     Submitted on the opposite strand 438/438
(100 %)
18 diff
(95.9 %id)
AA632427   .b 3377 to 3665 289 to 1       289/289
(100 %)
3 diff
(99.0 %id)
C00821   .b 3399 to 3654 1 to 256       256/256
(100 %)
2 diff
(99.3 %id)
CD516247 White Matter .b 3435 to 4221 1 to 793   tiling clone,   793/910
(87 %)
17 diff
(98.2 %id)
AI478131 Kidney .b 3447 to 3654 208 to 1       208/208
(100 %)
0 diff
(100 %id)
AI017094 pooled .b 3459 to 3653 195 to 1       195/195
(100 %)
0 diff
(100 %id)
BE326774 Kidney .b 3459 to 3790 331 to 1       331/334
(99 %)
2 diff
(99.5 %id)
BF447977 Kidney .b 3524 to 3790 269 to 1       269/269
(100 %)
5 diff
(98.2 %id)
BQ327432 heart_neonatal .b 3654 to 3987 333 to 1       333/333
(100 %)
8 diff
(97.6 %id)
BP421806 small intestine .b 3693 to 4205 1 to 514     Submitted on the opposite strand 514/514
(100 %)
7 diff
(98.7 %id)
AA508902 Prostate .b 3734 to 4054 332 to 8       325/339
(95 %)
0 diff
(100 %id)
BX508499   .b 3784 to 3962 1 to 178       178/181
(98 %)
4 diff
(97.8 %id)
CA439943 lung, Lung Focal Fibrosis .b 3904 to 4563 1 to 660     Submitted on the opposite strand 660/660
(100 %)
2 diff
(99.7 %id)
TI_44169651   .b 3924 to 4008 685 to 768       559/769
(72 %)
25 diff
(96.8 %id)
BU852619 testis .b 3966 to 4554 1 to 596       596/646
(92 %)
24 diff
(96.3 %id)
BE175649 head_neck .b 3980 to 4267 8 to 295       288/295
(97 %)
8 diff
(97.3 %id)
BG529871 embryonal carcinoma, testis .b 3989 to 4595 1 to 608       608/859
(70 %)
3 diff
(99.7 %id)
BQ020320 Chondrosarcoma, Left Pubic Bone .b 4001 to 4596 612 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 596/596
(100 %)
1 diff
(99.9 %id)
CA429021 Cell Line, Chondrosarcoma .b 4012 to 4601 603 to 14       590/603
(97 %)
0 diff
(100 %id)
DB357655 whole embryo, mainly head .b 4018 to 4596 575 to 1       575/577
(99 %)
16 diff
(97.3 %id)
BU617520 Bone, Subchondral Bone .b 4019 to 4590 590 to 19   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 572/572
(100 %)
2 diff
(99.7 %id)
AA652600   .b 4058 to 4597 1 to 536       536/603
(88 %)
17 diff
(97.2 %id)
DA179046 amygdala .b 4059 to 4638 2 to 582   capped   581/581
(100 %)
13 diff
(97.8 %id)
N62448 liver and spleen .b 4151 to 4600 451 to 1       451/451
(100 %)
3 diff
(99.4 %id)
DB537612 hippocampus .b 4162 to 4596 1 to 434     Submitted on the opposite strand 434/434
(100 %)
4 diff
(99.1 %id)
DB534608 hippocampus .b 4164 to 4596 1 to 434     Submitted on the opposite strand 434/434
(100 %)
5 diff
(98.9 %id)
DB546765 hippocampus .b 4172 to 4596 1 to 425     Submitted on the opposite strand 425/425
(100 %)
2 diff
(99.6 %id)
DB548213 hippocampus .b 4175 to 4596 1 to 423     Submitted on the opposite strand 423/423
(100 %)
3 diff
(99.3 %id)
H50436 brain .b 4202 to 4594 1 to 399       399/399
(100 %)
10 diff
(97.5 %id)
BF218023 brain, glioblastoma .b 4252 to 4792 1 to 541       541/542
(99 %)
3 diff
(99.5 %id)
CN294927 embryonic stem cells, DMSO-treated H9 cellline .b 4266 to 4910 1 to 645   tiling clone,   645/645
(100 %)
0 diff
(100 %id)
AI935650 Kidney .b 4348 to 4600 254 to 1       254/254
(100 %)
5 diff
(98.1 %id)
BF923326 nervous_tumor .b 4353 to 4772 432 to 13     Submitted on the opposite strand 420/583
(72 %)
0 diff
(100 %id)
D62683   .b 4380 to 4580 1 to 201       201/203
(99 %)
1 diff
(99.6 %id)
AI244036 Kidney .b 4406 to 4596 210 to 20   AAA Possibly primed on the genome, locally A rich (12/12 A in genome downstream of last aligned base) 191/191
(100 %)
0 diff
(100 %id)
DR978565 brain .b 4472 to 4594 1 to 121     Submitted on the opposite strand 121/128
(94 %)
4 diff
(96.9 %id)
C02359   .b 4477 to 4596 1 to 120       120/120
(100 %)
0 diff
(100 %id)
BF694368 muscle (skeletal) .b 4568 to 5227 1 to 647       647/881
(73 %)
16 diff
(98.2 %id)
AW611492 Kidney .b 4675 to 4990 321 to 5       317/321
(98 %)
0 diff
(100 %id)
BG399778 Kidney .b 4767 to 5415 1 to 650   tiling clone,   650/650
(100 %)
20 diff
(97.0 %id)
CF140670 CNCAP(3)T-225 cell line, Prostate .b 4800 to 5331 1 to 532   tiling clone,   532/532
(100 %)
3 diff
(99.5 %id)
CF140672 CNCAP(3)T-225 cell line, Prostate .b 4800 to 5288 1 to 489       489/489
(100 %)
2 diff
(99.6 %id)
TI_154171174   .b 4801 to 5361 73 to 633       561/633
(88 %)
6 diff
(99.1 %id)
TI_154171220   .b 4807 to 5362 78 to 634   tiling clone,   557/557
(100 %)
7 diff
(98.8 %id)
BP319542 pericardium .c 1 to 583 2 to 584   tiling clone,   584/584
(100 %)
0 diff
(100 %id)
CR613362 T cells (Jurkat cell line) Cot10-normalized .c 474 to 2039 1 to 1566   tiling clone,   1566/1566
(100 %)
0 diff
(100 %id)
AL557999 T cells from T cell leukemia .c 474 to 1365 1 to 884   fully sequenced,   884/884
(100 %)
1 diff
(99.9 %id)
AL579924 T cells from T cell leukemia .c 1335 to 2035 701 to 1   fully sequenced,   701/701
(100 %)
11 diff
(98.5 %id)
DA865276 Prostate .d 1 to 834 2 to 837   tiling clone, capped   836/836
(100 %)
19 diff
(97.8 %id)
DB329248 Prostate .d 1768 to 2267 500 to 1   tiling clone,   500/500
(100 %)
13 diff
(97.4 %id)
AK311478 brain .e 1 to 2218 4 to 2221 V271G tiling clone,   2221/2221
(100 %)
4 diff
(99.9 %id)
DA806243 brain .e 1 to 575 4 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA559053   .f 1 to 538 2 to 539   tiling clone, capped   538/538
(100 %)
0 diff
(100 %id)
DB056856 testis .f 10 to 531 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
DA301892 hippocampus .f 410 to 992 2 to 584   tiling clone, capped   583/583
(100 %)
0 diff
(100 %id)
AL704067 human skeletal muscle .g 1 to 520 1 to 521 A132X G136R S150* tiling clone,   521/521
(100 %)
3 diff
(99.5 %id)
DB013381 esophageal, tumor tissue .h-u 1 to 564 2 to 565   tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
DA934241 Spleen .h-u 14 to 592 2 to 580 H133L tiling clone, capped   579/579
(100 %)
1 diff
(99.9 %id)
AK123178 cerebellum .h-u 522 to 2027 1 to 1506   tiling clone, available from FLJ,   1506/1506
(100 %)
3 diff
(99.9 %id)
DA088253 cerebellum .h-u 523 to 1064 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
BQ712619 Spleen .h-u 865 to 1785 12 to 934   tiling clone,   923/934
(98 %)
6 diff
(99.4 %id)
DB298200 cerebellum .h-u 1509 to 2027 519 to 1       519/524
(99 %)
3 diff
(99.5 %id)
BP349488 brain .i 1 to 581 1 to 582 exact tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
BP231989 muscle .j 1 to 582 2 to 584 A7V V21E S53R Q73H S85F tiling clone,   584/584
(100 %)
11 diff
(98.2 %id)
DA921357 small intestine .k 1 to 549 2 to 550 exact tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
AL712447 human skeletal muscle .k 13 to 574 1 to 562 A2V     562/562
(100 %)
3 diff
(99.5 %id)
DB282223 uterus .k 17 to 564 2 to 549 exact capped   548/548
(100 %)
0 diff
(100 %id)
BX506186   .k 18 to 551 1 to 534 W93*     534/534
(100 %)
3 diff
(99.5 %id)
DB102809 thymus .k 176 to 725 2 to 551   tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
CB958692 Pooled-Glandular .l 1 to 488 65 to 554 N2S F3L V4C F5S L6F ... tiling clone,   490/738
(66 %)
15 diff
(98.0 %id)
AI692625 carcinoid, lung .l 98 to 332 235 to 1       235/596
(39 %)
0 diff
(100 %id)
BF110629 carcinoid, lung .l 98 to 336 239 to 1       239/474
(50 %)
0 diff
(100 %id)
FN054889 breast carcinoma .m-u 1 to 60 1 to 60 exact tiling clone,   60/61
(98 %)
1 diff
(98.4 %id)
CA418595 Chondrosarcoma Grade II, Left Pelvis Gene ALDH6A1, variant not shown         This clone was ignored    
BQ574588 Chondrosarcoma Grade II, Left Pelvis Gene ALDH6A1, variant not shown         This clone was ignored    
AV689246 hepatocellular carcinoma Gene ALDH6A1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AV683833 hepatocellular carcinoma Gene ALDH6A1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AV708459 adrenal gland Gene ALDH6A1, variant not shown         Suspected internal deletion, this clone was ignored    
AV645502 corresponding non cancerous liver tissue Gene ALDH6A1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV654254 corresponding non cancerous liver tissue Gene ALDH6A1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BX399993   Gene ALDH6A1, variant not shown         This clone was ignored    
AA357060   Gene ALDH6A1, variant not shown         This clone was ignored    
BP276979 Kidney Gene ALDH6A1, variant not shown         Suspected internal deletion, this clone was ignored    
AI204326 lung Gene ALDH6A1, variant not shown         Suspected internal deletion, this clone was ignored    
AW083338 colon, moderately differentiated adenocarcinoma Gene ALDH6A1, variant not shown         This clone was ignored    
AW083443 colon, moderately differentiated adenocarcinoma Gene ALDH6A1, variant not shown         This clone was ignored    
BE206845 lung, small cell carcinoma Gene ALDH6A1, variant not shown         This clone was ignored    
AW731995 lung, small cell carcinoma Gene ALDH6A1, variant not shown       AAA This clone was ignored    
AW612403 Kidney Gene ALDH6A1, variant not shown         This clone was ignored    
BE501867 Kidney Gene ALDH6A1, variant not shown         This clone was ignored    
TI_157596278   Gene ALDH6A1, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k, .l, .m-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC