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Gene ACCN1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
64 supporting clones for gene ACCN1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AW298429   .a 1 to 240 240 to 1   tiling clone,   240/240
(100 %)
0 diff
(100 %id)
DB480134 hippocampus .a 173 to 666 1 to 494   tiling clone,   494/498
(99 %)
14 diff
(97.2 %id)
DB496014 hypothalamus .a 263 to 580 1 to 319   tiling clone,   319/320
(99 %)
9 diff
(97.2 %id)
DB501072 hypothalamus .a 263 to 741 1 to 481       481/485
(99 %)
4 diff
(99.2 %id)
AL834182 amygdala .a 480 to 3920 1 to 3441 H67R tiling clone, available from DKFZ, AAA   3441/3441
(100 %)
4 diff
(99.9 %id)
NM_183377.1   .a 480 to 3919 1 to 3440 exact RefSeq, AAA   3440/3440
(100 %)
0 diff
(100 %id)
BY800473 eye .a 946 to 1113 1 to 168       168/168
(100 %)
1 diff
(99.5 %id)
AK127748 brain .a 1564 to 3919 1 to 2356   tiling clone, available from FLJ,   2356/2356
(100 %)
2 diff
(100.0 %id)
DA775599 brain .a 1565 to 2067 2 to 505   capped   504/563
(89 %)
6 diff
(99.0 %id)
DA390129 thalamus .a 1668 to 2233 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
AV750543 Pituitary .a 3139 to 3426 1 to 282       282/286
(98 %)
5 diff
(98.3 %id)
AA457638   .a 3143 to 3529 1 to 386     Submitted on the opposite strand 386/386
(100 %)
2 diff
(99.5 %id)
BU733480 eye, optic nerve .a 3145 to 3919 793 to 19   AAA   775/775
(100 %)
3 diff
(99.7 %id)
DB325967 brain .a 3372 to 3919 548 to 1       548/548
(100 %)
0 diff
(100 %id)
DB576949 hypothalamus .a 3426 to 3919 1 to 494     Submitted on the opposite strand 494/494
(100 %)
0 diff
(100 %id)
DB572251 hypothalamus .a 3431 to 3919 1 to 489     Submitted on the opposite strand 489/489
(100 %)
1 diff
(99.8 %id)
AI473139 Kidney .a 3433 to 3922 507 to 1   tiling clone,   507/518
(97 %)
18 diff
(96.6 %id)
DB567021 hypothalamus .a 3451 to 3919 1 to 471     Submitted on the opposite strand 471/471
(100 %)
10 diff
(97.9 %id)
DB548873 hippocampus .a 3470 to 3916 1 to 447     Submitted on the opposite strand 447/450
(99 %)
3 diff
(99.4 %id)
AI825456 pooled germ cell tumors .a 3502 to 3919 420 to 1       420/420
(100 %)
4 diff
(99.1 %id)
T16341   .a 3572 to 3919 348 to 1       348/348
(100 %)
1 diff
(99.8 %id)
DA768088 brain .b 1 to 584 2 to 587   tiling clone, capped   586/586
(100 %)
2 diff
(99.7 %id)
DA769808 brain .b 68 to 635 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA786762 brain .b 212 to 789 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
NM_001094.4   .b 488 to 3175 1 to 2688 exact RefSeq, AAA   2688/2688
(100 %)
0 diff
(100 %id)
U57352 brain frontal cortex .b 488 to 3175 1 to 2689 exact tiling clone, AAA   2689/2689
(100 %)
2 diff
(100.0 %id)
DA198054 brain .b 496 to 973 2 to 479   capped   478/478
(100 %)
0 diff
(100 %id)
AK313043 brain .b 519 to 2300 1 to 1782 K459R tiling clone,   1782/1782
(100 %)
2 diff
(99.9 %id)
DA205864 brain .b 520 to 1102 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA159365 amygdala .b 544 to 1059 2 to 519   capped   518/518
(100 %)
2 diff
(99.7 %id)
DA200819 brain .b 544 to 1135 2 to 593   capped   592/592
(100 %)
3 diff
(99.5 %id)
DA251946 caudate nucleus .b 544 to 1131 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA203211 brain .b 545 to 1119 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA776654 brain .b 545 to 1051 2 to 508   capped   507/507
(100 %)
1 diff
(99.9 %id)
DA777722 brain .b 545 to 1116 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DA294212 hippocampus .b 546 to 1117 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
DA772844 brain .b 546 to 1107 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
DA794655 brain .b 549 to 1018 2 to 471   capped   470/470
(100 %)
1 diff
(99.8 %id)
DA794677 brain .b 549 to 1100 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
DB505663 hypothalamus .b 560 to 1057 1 to 498       498/498
(100 %)
1 diff
(99.8 %id)
CD610591   .b 563 to 1324 8 to 776       769/791
(97 %)
12 diff
(98.5 %id)
DA773083 brain .b 574 to 1147 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA359440 subthalamic nucleus .b 579 to 1138 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
CD610592   .b 612 to 1324 796 to 85       712/796
(89 %)
0 diff
(100 %id)
DR003487 fetal brain .b 613 to 983 1 to 371       371/371
(100 %)
2 diff
(99.5 %id)
U53212   .b 635 to 2297 1 to 1663       1663/1663
(100 %)
8 diff
(99.6 %id)
DA182094 amygdala .b 715 to 1269 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BC075042 Brain, PCR rescued clones .b 721 to 2345 1 to 1625 exact available from MGC,   1625/1625
(100 %)
2 diff
(99.9 %id)
BC075043 Brain, PCR rescued clones .b 721 to 2345 1 to 1625 exact available from MGC,   1625/1625
(100 %)
2 diff
(99.9 %id)
U50352 brain .b 762 to 2300 1 to 1539 T495A     1539/1539
(100 %)
3 diff
(99.9 %id)
CD672292 eye, Iris .b 1600 to 2155 1 to 556       556/556
(100 %)
0 diff
(100 %id)
TI_57197924   .b 1814 to 2574 7 to 769       763/769
(99 %)
14 diff
(98.2 %id)
BI821247 pooled brain, lung, testis .b 1838 to 2574 1 to 738       738/738
(100 %)
3 diff
(99.6 %id)
BM695413 eye, optic nerve .b 1904 to 2641 1 to 738   fully sequenced,   738/738
(100 %)
2 diff
(99.8 %id)
BX109621 whole brain .b 2019 to 2542 1 to 524       524/524
(100 %)
1 diff
(99.9 %id)
Z45660 brain, total brain .b 2019 to 2317 1 to 299       299/299
(100 %)
2 diff
(99.4 %id)
CR745747   .b 2019 to 2556 1 to 538       538/538
(100 %)
0 diff
(100 %id)
H12215 whole brain .b 2021 to 2550 1 to 545       545/546
(99 %)
33 diff
(94.0 %id)
R15377 whole brain .b 2069 to 2408 1 to 345       345/422
(81 %)
10 diff
(97.7 %id)
R35720 whole brain .b 2069 to 2443 1 to 393       393/446
(88 %)
21 diff
(95.3 %id)
BU739497 eye, optic nerve .b 2611 to 3175 583 to 19   tiling clone, fully sequenced, AAA   565/565
(100 %)
0 diff
(100 %id)
R49357 whole brain .b 2716 to 3175 486 to 17   AAA   470/473
(99 %)
32 diff
(93.3 %id)
H12216 whole brain .b 2721 to 3175 474 to 16   AAA   459/461
(99 %)
19 diff
(95.9 %id)
R42118 whole brain .b 2900 to 3175 295 to 11   AAA   285/310
(91 %)
11 diff
(96.5 %id)
F04549 brain, total brain .b 2928 to 3175 248 to 1       248/248
(100 %)
2 diff
(99.2 %id)
DA064079 cerebellum .c 1 to 558 2 to 561   tiling clone, capped   560/560
(100 %)
3 diff
(99.5 %id)
BI823745 pooled brain, lung, testis .c 353 to 1064 35 to 748 C140S C170A N171S S186R K187Q ... tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 714/786
(90 %)
21 diff
(97.4 %id)
TI_57202520   .c 353 to 1064 101 to 814 C140S C170A N171S S186R K187Q ... AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 714/852
(83 %)
21 diff
(97.6 %id)
TI_1959502667.
matches multiple genes
  Gene ACCN1, variant not shown         This clone was ignored, also hits gene TLK2P1    
TI_1959502667.
matches multiple genes
  Gene TLK2P1, variant not shown         This clone was ignored, also hits gene TLK2P1    
CX871357.
matches multiple genes
embryonic stem Gene ACCN1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene TLK2P1    
CX871357.
matches multiple genes
embryonic stem Gene TLK2P1, variant not shown         Suspected internal deletion, this clone was ignored, also hits gene TLK2P1    
? Gene Summary Gene on genome mRNA:.a, .b, .c Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI