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Gene ACAT1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
170 supporting clones for gene ACAT1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB010738 colon, tumor tissue .a 1 to 372 2 to 373   tiling clone, capped   372/372
(100 %)
2 diff
(99.5 %id)
D90228 Liver .a 14 to 1532 1 to 1518 exact tiling clone,   1518/1518
(100 %)
2 diff
(99.9 %id)
NM_000019.3   .a 15 to 2146 1 to 2132 exact RefSeq, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 2132/2132
(100 %)
0 diff
(100 %id)
DA914792   .a 27 to 595 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
AK312574 brain .a 48 to 1374 1 to 1327 exact     1327/1327
(100 %)
1 diff
(100.0 %id)
BP375630 uterus .a 48 to 627 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA352036 substantia nigra .a 49 to 596 2 to 550   capped   547/550
(99 %)
3 diff
(99.5 %id)
DA357405 subthalamic nucleus .a 49 to 609 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
DA493635 brain .a 49 to 616 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
AU143159   .a 49 to 872 2 to 819   capped   818/819
(99 %)
8 diff
(99.1 %id)
AU100279   .a 49 to 347 1 to 300       300/300
(100 %)
3 diff
(99.0 %id)
AU108038   .a 49 to 98 1 to 50       50/50
(100 %)
2 diff
(96.0 %id)
BP380941   .a 50 to 638 1 to 591       591/850
(69 %)
19 diff
(97.8 %id)
BP194596 brain .a 51 to 632 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BP257974 heart .a 51 to 522 1 to 472       472/568
(83 %)
12 diff
(97.9 %id)
BP258806 heart .a 51 to 612 1 to 562       562/562
(100 %)
7 diff
(98.8 %id)
BP308813 brain .a 51 to 627 1 to 582       582/582
(100 %)
9 diff
(98.5 %id)
BP360666 thalamus .a 51 to 633 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP373136 umbilical cord .a 51 to 627 1 to 578       578/581
(99 %)
2 diff
(99.7 %id)
BP377795 uterus .a 51 to 631 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
AU108037   .a 51 to 100 1 to 50       50/50
(100 %)
0 diff
(100 %id)
DA008540 adipose .a 52 to 614 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA091679 cerebellum .a 52 to 560 2 to 511   capped   510/511
(99 %)
3 diff
(99.5 %id)
DA129378 alzheimer cortex .a 52 to 616 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA430298 colon .a 52 to 419 2 to 369   capped   368/368
(100 %)
0 diff
(100 %id)
DA560534 heart .a 52 to 626 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA566797 heart .a 52 to 410 2 to 360   capped   359/359
(100 %)
0 diff
(100 %id)
AU117943 whole embryo, mainly head .a 52 to 917 2 to 869   capped   868/887
(97 %)
6 diff
(99.4 %id)
DA583502 lung .a 52 to 596 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA615995   .a 52 to 620 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DA632177 Kidney .a 52 to 628 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA668873 esophagus .a 52 to 543 2 to 493   capped   492/492
(100 %)
2 diff
(99.6 %id)
DA688222   .a 52 to 592 2 to 542   capped   541/541
(100 %)
2 diff
(99.7 %id)
DA893552 skeletal muscle .a 52 to 526 2 to 477   capped   476/491
(96 %)
4 diff
(99.2 %id)
DA893998 skeletal muscle .a 52 to 524 2 to 475   capped   474/474
(100 %)
2 diff
(99.6 %id)
DA900126 skeletal muscle .a 52 to 614 2 to 565   capped   564/564
(100 %)
5 diff
(99.2 %id)
AU142655   .a 52 to 917 2 to 874   capped   873/880
(99 %)
12 diff
(98.7 %id)
BP380880   .a 52 to 474 1 to 423       423/472
(89 %)
2 diff
(99.6 %id)
DR004764 placenta .a 57 to 670 1 to 614       614/622
(98 %)
21 diff
(96.7 %id)
BM472327 embryonal carcinoma, cell line, testis .a 62 to 821 12 to 778       767/1071
(71 %)
21 diff
(98.1 %id)
BX443877 fetal liver, Liver .a 63 to 425 1 to 362       362/735
(49 %)
13 diff
(98.3 %id)
EC464462 Prostate .a 64 to 154 1 to 89       89/89
(100 %)
7 diff
(92.2 %id)
EC487749 Prostate .a 66 to 154 1 to 89       89/89
(100 %)
4 diff
(95.6 %id)
BM457169 embryonal carcinoma, cell line, testis .a 68 to 822 1 to 761       761/966
(78 %)
19 diff
(98.1 %id)
DB489516 hypothalamus .a 69 to 538 1 to 472       472/474
(99 %)
11 diff
(97.7 %id)
BM474090 leiomyosarcoma, uterus .a 69 to 926 13 to 877       865/1046
(82 %)
25 diff
(97.7 %id)
BF528753 anaplastic oligodendroglioma with 1p/19qloss, brain .a 70 to 770 1 to 700       700/700
(100 %)
2 diff
(99.8 %id)
AU310532 neuroblastoma .a 74 to 669 5 to 600       596/600
(99 %)
5 diff
(99.2 %id)
DN990305 brain, whole brain .a 77 to 682 9 to 614       606/614
(98 %)
6 diff
(99.1 %id)
CN369577 embryonic stem cells, DMSO-treated H9 cellline .a 78 to 746 1 to 669       669/669
(100 %)
0 diff
(100 %id)
BP227188   .a 81 to 665 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
BF175249 blood .a 85 to 216 1 to 131       131/170
(77 %)
7 diff
(95.9 %id)
BG165125 hypernephroma, cell line, Kidney .a 97 to 909 1 to 808       808/879
(91 %)
30 diff
(96.6 %id)
BP382319 adipose tissue .a 105 to 674 1 to 569       569/574
(99 %)
12 diff
(98.0 %id)
BQ344414 nervous_tumor .a 139 to 425 10 to 296       287/303
(94 %)
15 diff
(95.1 %id)
BG196361   .a 159 to 916 1 to 761       761/804
(94 %)
25 diff
(96.9 %id)
BG874806 breast .a 219 to 826 616 to 1       628/657
(95 %)
63 diff
(90.5 %id)
BG874811 breast .a 219 to 816 617 to 18       600/623
(96 %)
18 diff
(97.2 %id)
FN052860 breast carcinoma .a 224 to 329 1 to 108       108/109
(99 %)
3 diff
(97.3 %id)
BG874804 breast .a 235 to 716 573 to 89       485/573
(84 %)
4 diff
(99.4 %id)
BQ348355 head_neck .a 321 to 681 1 to 374       353/374
(94 %)
20 diff
(94.7 %id)
BQ317918 colon .a 376 to 728 1 to 353       353/365
(96 %)
5 diff
(98.7 %id)
BQ378718 uterus_tumor .a 431 to 887 460 to 4       457/460
(99 %)
2 diff
(99.6 %id)
TI_57229227   .a 442 to 1241 104 to 910       807/807
(100 %)
16 diff
(98.1 %id)
BI870235 adenocarcinoma, cell line, Liver .a 443 to 1241 1 to 806       806/806
(100 %)
16 diff
(98.1 %id)
BG740338 skin .a 459 to 1326 1 to 873       873/873
(100 %)
18 diff
(98.0 %id)
BF968297 adrenal cortex carcinoma, cell line, adrenal gland .a 486 to 1206 1 to 720       719/730
(98 %)
32 diff
(95.7 %id)
BQ344399 nervous_tumor .a 493 to 889 415 to 19       397/415
(95 %)
1 diff
(99.8 %id)
EB388792 eye, optic nerve .a 520 to 1221 1 to 702       702/702
(100 %)
6 diff
(99.2 %id)
FN063095 breast carcinoma .a 539 to 639 1 to 101       101/101
(100 %)
0 diff
(100 %id)
BQ302657 breast .a 565 to 1247 684 to 5       680/684
(99 %)
4 diff
(99.5 %id)
BQ317101 colon .a 576 to 822 271 to 25       247/284
(86 %)
0 diff
(100 %id)
BQ317515 colon .a 581 to 844 1 to 263       263/266
(98 %)
5 diff
(98.2 %id)
AW997146 breast_normal .a 683 to 945 268 to 7     Submitted on the opposite strand 262/268
(97 %)
2 diff
(99.3 %id)
FN085543 breast carcinoma .a 706 to 757 1 to 52       52/53
(98 %)
1 diff
(98.2 %id)
BG577242 breast, mammary adenocarcinoma, cell line .a 724 to 1254 1 to 540       540/812
(66 %)
16 diff
(98.1 %id)
BQ339117 nervous_normal .a 757 to 1022 285 to 22       264/285
(92 %)
0 diff
(100 %id)
AW806485 stomach .a 940 to 1037 99 to 4       96/99
(96 %)
0 diff
(100 %id)
FN061490 breast carcinoma .a 954 to 1030 83 to 7     Submitted on the opposite strand 77/83
(92 %)
0 diff
(100 %id)
FN144049 breast carcinoma .a 972 to 1057 1 to 86       86/86
(100 %)
0 diff
(100 %id)
CV424322 colon_est .a 977 to 1457 484 to 5     Submitted on the opposite strand 480/494
(97 %)
7 diff
(98.6 %id)
BQ304506 breast .a 991 to 1472 488 to 9       480/488
(98 %)
3 diff
(99.4 %id)
EC554580 Prostate .a 1002 to 1089 1 to 87       87/87
(100 %)
1 diff
(98.9 %id)
FN153708 breast carcinoma .a 1042 to 1131 90 to 1     Submitted on the opposite strand 90/90
(100 %)
4 diff
(95.6 %id)
AU144630 whole embryo, mainly head .a 1047 to 1583 537 to 1       537/540
(99 %)
5 diff
(99.1 %id)
AU160294   .a 1089 to 1576 487 to 1       487/501
(97 %)
8 diff
(98.5 %id)
AU159921   .a 1092 to 1578 489 to 6       484/570
(84 %)
6 diff
(99.0 %id)
AW804103 uterus .a 1094 to 1254 12 to 171       160/177
(90 %)
4 diff
(97.8 %id)
FN119577 breast carcinoma .a 1117 to 1219 103 to 1     Submitted on the opposite strand 103/114
(90 %)
0 diff
(100 %id)
FN151572 breast carcinoma .a 1135 to 1243 1 to 111       111/111
(100 %)
1 diff
(99.1 %id)
BQ319846 colon .a 1247 to 1401 1 to 156       156/156
(100 %)
11 diff
(93.0 %id)
F00504 leg muscle, skeletal muscle .a 1248 to 1563 1 to 316       316/324
(97 %)
10 diff
(97.0 %id)
AI567965 ovary, tumor, 5 pooled (see description) .a 1249 to 1583 362 to 28   AAA   335/335
(100 %)
0 diff
(100 %id)
BU165358 eye, retinoblastoma .a 1250 to 1587 5 to 344       340/381
(89 %)
16 diff
(95.9 %id)
EC571795 Prostate .a 1274 to 1361 9 to 96       88/96
(91 %)
15 diff
(84.4 %id)
BI012701 lung_tumor .a 1290 to 1429 1 to 138       138/138
(100 %)
6 diff
(95.7 %id)
BI014888 lung_tumor .a 1293 to 1429 11 to 145       135/145
(93 %)
7 diff
(95.2 %id)
BG030485 breast, mammary adenocarcinoma, cell line .a 1296 to 1547 27 to 278   AAA   252/291
(86 %)
4 diff
(98.7 %id)
EC551976 Prostate .a 1300 to 1398 1 to 100       100/100
(100 %)
2 diff
(98.0 %id)
AI202672 Prostate .a 1303 to 1799 497 to 1   tiling clone,   497/497
(100 %)
0 diff
(100 %id)
BG210420   .a 1304 to 1583 48 to 327   AAA   280/327
(85 %)
6 diff
(98.2 %id)
FN079405 breast carcinoma .a 1340 to 1423 1 to 84       84/84
(100 %)
0 diff
(100 %id)
BI520566 brain, medulla .a 1341 to 1583 1 to 243   AAA   243/243
(100 %)
0 diff
(100 %id)
DB559066 hypothalamus .a 1350 to 1796 1 to 447     Submitted on the opposite strand 447/447
(100 %)
1 diff
(99.8 %id)
FN058613 breast carcinoma .a 1353 to 1443 91 to 1     Submitted on the opposite strand 91/93
(97 %)
0 diff
(100 %id)
FN149717 breast carcinoma .a 1390 to 1484 1 to 93       93/96
(96 %)
7 diff
(92.8 %id)
BM789408 Ascites, stomach .a 1586 to 2146 1 to 561   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 561/561
(100 %)
0 diff
(100 %id)
AF086561 heart .a 1596 to 2219 1 to 620   tiling clone, fully sequenced,   620/620
(100 %)
3 diff
(99.6 %id)
AW750026 breast .a 1827 to 2259 10 to 440   tiling clone,   431/440
(97 %)
11 diff
(97.5 %id)
AA010069 heart .a 1924 to 1960 37 to 1   fully sequenced,   37/37
(100 %)
0 diff
(100 %id)
CV322052 bladder_tumor .b 1 to 429 433 to 6   tiling clone, Submitted on the opposite strand 428/433
(98 %)
2 diff
(99.6 %id)
BX509752   .b 249 to 922 671 to 1   tiling clone, Submitted on the opposite strand 671/671
(100 %)
4 diff
(99.5 %id)
AI683154 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 342 to 919 576 to 1   tiling clone,   576/576
(100 %)
6 diff
(99.0 %id)
BF667268 brain, primitive neuroectoderm .c 1 to 654 1 to 645 A5P L18C L19S R20G R21G ... tiling clone, available from MGC,   645/888
(72 %)
25 diff
(97.2 %id)
BC010942 Brain, primitive neuroectodermal .c 2 to 1347 5 to 1351 A5P tiling clone, available from MGC, AAA   1347/1347
(100 %)
4 diff
(99.8 %id)
CV030068 mixed .c 42 to 529 1 to 488       488/632
(77 %)
2 diff
(99.7 %id)
TI_1948098533   .c 111 to 529 552 to 134       419/1402
(29 %)
1 diff
(100.0 %id)
TI_1948098808   .c 112 to 529 548 to 130       419/1459
(28 %)
2 diff
(99.9 %id)
AA312281 Kidney .c 675 to 992 321 to 1     Submitted on the opposite strand 321/321
(100 %)
3 diff
(99.1 %id)
FN078378 breast carcinoma .c 944 to 1001 1 to 58       58/62
(93 %)
2 diff
(96.8 %id)
BC063853 Peripheral Nervous System, dorsal rootganglion .d 1 to 2247 1 to 2246 Q124H C125V S126P I127Y C128V ... tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 2246/2246
(100 %)
3 diff
(99.9 %id)
BU146622 dorsal root ganglia .d 2 to 800 1 to 806 Q124H C125V S126P I127Y C128V ... available from MGC,   806/1002
(80 %)
20 diff
(98.1 %id)
CA776724 Pancreas, Purified pancreatic islet .e 1 to 318 1 to 318   tiling clone, fully sequenced,   318/318
(100 %)
0 diff
(100 %id)
CA776496 Pancreas, Purified pancreatic islet .e 257 to 636 380 to 1   tiling clone, fully sequenced,   380/380
(100 %)
0 diff
(100 %id)
DA128909 cerebellum .f 1 to 505 2 to 506 exact tiling clone, capped   505/505
(100 %)
2 diff
(99.7 %id)
DB075461 testis .g 1 to 569 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DB027008 testis .g 3 to 565 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BQ348673 head_neck .g 340 to 753 1 to 414 N3K P117A tiling clone,   414/416
(99 %)
6 diff
(98.6 %id)
BG723058 testis .h 113 to 725 128 to 738 E99I tiling clone,   738/802
(92 %)
16 diff
(98.1 %id)
AL041431 testis .i 1 to 558 558 to 1 exact tiling clone,   558/558
(100 %)
0 diff
(100 %id)
AW081574 colon, moderately differentiated adenocarcinoma .i 81 to 569 501 to 13 E3K A7P A14P N15T Q24K ... AAA   489/497
(98 %)
16 diff
(96.8 %id)
F27643 pectoral muscle (after mastectomy) .i 88 to 445 1 to 358 G43*     358/358
(100 %)
3 diff
(99.2 %id)
BQ276954 mixed (pool of 40 RNAs) .i 99 to 566 1 to 468 exact     468/980
(47 %)
15 diff
(98.5 %id)
AV708226 adrenal gland .i 102 to 529 1 to 428 exact     428/428
(100 %)
0 diff
(100 %id)
TI_57151660   .i 109 to 553 63 to 507 M18R AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 445/507
(87 %)
6 diff
(98.9 %id)
BI763850 pooled colon, kidney, stomach .i 112 to 553 1 to 442 M18R AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 442/442
(100 %)
1 diff
(99.8 %id)
CF595927 Stomach, adenocarcinoma .i 112 to 573 1 to 462 exact     462/493
(93 %)
5 diff
(99.0 %id)
F28457 pectoral muscle (after mastectomy) .i 126 to 517 1 to 392       392/392
(100 %)
2 diff
(99.5 %id)
BQ375090 testis_normal .i 127 to 526 401 to 3       399/401
(99 %)
0 diff
(100 %id)
F28477 pectoral muscle (after mastectomy) .i 134 to 428 1 to 295       295/295
(100 %)
0 diff
(100 %id)
T28635 gallbladder .i 135 to 380 1 to 248       248/248
(100 %)
2 diff
(99.2 %id)
AW945161   .i 136 to 542 1 to 405       405/532
(76 %)
15 diff
(97.2 %id)
AW950643   .i 136 to 511 1 to 372   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 372/372
(100 %)
7 diff
(98.2 %id)
BQ353622 head_neck .i 139 to 559 426 to 4       423/426
(99 %)
0 diff
(100 %id)
BF431005 Kidney .i 140 to 546 408 to 1       408/409
(99 %)
15 diff
(96.4 %id)
AA528456 Ewing's sarcoma .i 148 to 562 427 to 19   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 409/416
(98 %)
3 diff
(99.3 %id)
FN081177 breast carcinoma .i 154 to 254 102 to 1     Submitted on the opposite strand 102/102
(100 %)
1 diff
(99.1 %id)
BF357606 head_neck .i 155 to 500 52 to 403       352/403
(87 %)
10 diff
(97.6 %id)
BP318763 pericardium .i 173 to 562 1 to 391   AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 391/391
(100 %)
1 diff
(99.8 %id)
BG611640 adenocarcinoma, Prostate .i 174 to 573 1 to 407       407/791
(51 %)
12 diff
(98.5 %id)
BQ353629 head_neck .i 175 to 569 409 to 16       394/409
(96 %)
0 diff
(100 %id)
BG929263 cartilage .i 180 to 746 82 to 649   tiling clone,   568/585
(97 %)
8 diff
(98.7 %id)
AI871665 ovary, tumor, 5 pooled (see description) .i 180 to 562 384 to 1       384/384
(100 %)
2 diff
(99.5 %id)
C01800   .i 184 to 544 1 to 364       364/365
(99 %)
4 diff
(99.0 %id)
F26363 pectoral muscle (after mastectomy) .i 186 to 573 13 to 400       388/405
(95 %)
7 diff
(98.3 %id)
F36678 pectoral muscle (after mastectomy) .i 194 to 521 1 to 328       328/328
(100 %)
0 diff
(100 %id)
AA550785 normal prostatic epithelial cells, Prostate .i 201 to 562 371 to 10       362/372
(97 %)
0 diff
(100 %id)
BU861263 mixed (pool of 40 RNAs) .i 204 to 564 1 to 361       361/394
(91 %)
4 diff
(99.0 %id)
AI654154 Kidney .i 223 to 546 335 to 12       324/335
(96 %)
0 diff
(100 %id)
T85734 liver and spleen .j-u 1 to 212 1 to 212 F37X K63X tiling clone,   212/212
(100 %)
0 diff
(100 %id)
DW410894 Liver .j-u 61 to 375 17 to 331       315/331
(95 %)
6 diff
(98.2 %id)
CB158309 Liver .j-u 91 to 551 1 to 461       461/461
(100 %)
0 diff
(100 %id)
BM722006 eye, fetal eye .j-u 103 to 659 1 to 558   tiling clone, fully sequenced,   558/558
(100 %)
0 diff
(100 %id)
AA705418 liver and spleen .j-u 629 to 922 294 to 1   tiling clone,   294/294
(100 %)
1 diff
(99.7 %id)
BM678519 eye, fetal eye .j-u 629 to 1245 615 to 1   tiling clone, fully sequenced,   615/615
(100 %)
6 diff
(99.1 %id)
DB059313 testis .k 1 to 525 2 to 526   tiling clone, capped   525/525
(100 %)
0 diff
(100 %id)
AI139512 uterus .k 458 to 965 508 to 1 exact tiling clone,   508/508
(100 %)
0 diff
(100 %id)
AW297552   .k 572 to 957 403 to 18   AAA   386/386
(100 %)
0 diff
(100 %id)
DR760374 embryonic stem .l-u 1 to 816 818 to 4 exact tiling clone, Submitted on the opposite strand 815/818
(99 %)
0 diff
(100 %id)
BF814713 colon_ins .l-u 144 to 501 21 to 378 exact     358/378
(94 %)
6 diff
(98.5 %id)
BE927504 colon .l-u 314 to 601 1 to 284   tiling clone,   284/284
(100 %)
10 diff
(96.5 %id)
AA527369 colon .m-u 1 to 465 1 to 465 Q33P L34S P35H M37* tiling clone, Submitted on the opposite strand 465/465
(100 %)
5 diff
(99.0 %id)
AW972254   .m-u 4 to 498 1 to 495 exact tiling clone,   495/577
(85 %)
3 diff
(99.5 %id)
DB039726 testis .n 1 to 431 2 to 432 exact tiling clone, capped   431/431
(100 %)
0 diff
(100 %id)
DB057536 testis .n 19 to 492 2 to 475 exact tiling clone, capped   474/474
(100 %)
0 diff
(100 %id)
BX361786   Gene ACAT1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k, .l-u, .m-u, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI