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Gene ABTB2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
147 supporting clones for gene ABTB2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB281380 uterus .a 1 to 547 2 to 548   tiling clone, capped   547/547
(100 %)
3 diff
(99.5 %id)
AK291744 placenta .a 25 to 3800 1 to 3776 E101* tiling clone,   3776/3777
(99 %)
8 diff
(99.8 %id)
NM_145804.2   .a 26 to 4927 1 to 4902 exact RefSeq, AAA   4902/4902
(100 %)
0 diff
(100 %id)
DA861128 placenta .a 26 to 604 2 to 580   capped   579/579
(100 %)
3 diff
(99.5 %id)
DA092496 cerebellum .a 27 to 545 2 to 520   capped   519/519
(100 %)
4 diff
(99.3 %id)
DA101200 cerebellum .a 27 to 621 2 to 596   capped   595/595
(100 %)
4 diff
(99.4 %id)
DA441075 tongue, tumor tissue .a 27 to 528 2 to 504   capped   503/503
(100 %)
4 diff
(99.3 %id)
DB219285 trachea .a 27 to 567 2 to 542   capped   541/541
(100 %)
4 diff
(99.3 %id)
DB283497 uterus .a 27 to 576 2 to 551   capped   550/550
(100 %)
3 diff
(99.5 %id)
DA314245 hippocampus .a 30 to 583 2 to 555   capped   554/554
(100 %)
3 diff
(99.5 %id)
CN256163 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 36 to 553 1 to 518   tiling clone,   518/518
(100 %)
2 diff
(99.7 %id)
AW135698   .a 37 to 319 283 to 1   tiling clone,   283/297
(95 %)
1 diff
(99.7 %id)
AI751453 Bone, Hip .a 38 to 523 1 to 486       486/486
(100 %)
6 diff
(98.8 %id)
AW067899 Bone, Hip .a 41 to 410 17 to 389       373/394
(94 %)
7 diff
(98.3 %id)
DA405397 thalamus .a 44 to 533 2 to 491   capped   490/490
(100 %)
4 diff
(99.2 %id)
AI167201 pooled .a 378 to 790 1 to 413   tiling clone, Submitted on the opposite strand 413/413
(100 %)
0 diff
(100 %id)
AI473243 Kidney .a 378 to 503 1 to 126     Submitted on the opposite strand 126/126
(100 %)
0 diff
(100 %id)
BP332523 renal proximal tubule .a 704 to 1283 1 to 580       580/581
(99 %)
4 diff
(99.4 %id)
AK095632 brain .a 779 to 4927 1 to 4149   tiling clone, available from FLJ,   4149/4149
(100 %)
2 diff
(100.0 %id)
DA506702 brain .a 780 to 1345 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
TI_891527313   .a 908 to 1551 654 to 12     Submitted on the opposite strand 643/1227
(52 %)
3 diff
(99.8 %id)
TI_891527314   .a 908 to 1288 382 to 2     Submitted on the opposite strand 381/1224
(31 %)
0 diff
(100 %id)
TI_891529343   .a 908 to 1921 234 to 1234     Submitted on the opposite strand 1001/1266
(79 %)
35 diff
(97.3 %id)
TI_891529963   .a 908 to 2023 43 to 1148     Submitted on the opposite strand 1106/1238
(89 %)
25 diff
(98.0 %id)
TI_891527312   .a 911 to 1979 1072 to 9     Submitted on the opposite strand 1064/1216
(87 %)
9 diff
(99.3 %id)
BX113341 pooled .a 913 to 1129 217 to 1     Submitted on the opposite strand 217/217
(100 %)
1 diff
(99.6 %id)
BC093968 Brain, cerebral cortex, PCR rescued clones .a 914 to 3615 1 to 2702       2702/2702
(100 %)
0 diff
(100 %id)
CD637420   .a 961 to 1482 527 to 7       521/528
(98 %)
0 diff
(100 %id)
CD637421   .a 979 to 1488 1 to 510       510/511
(99 %)
0 diff
(100 %id)
CD637416   .a 999 to 1488 1 to 490       490/491
(99 %)
0 diff
(100 %id)
CD637417   .a 999 to 1482 489 to 7       483/489
(98 %)
0 diff
(100 %id)
TI_891529769   .a 1158 to 2290 12 to 1136       1125/1239
(90 %)
20 diff
(98.4 %id)
DA240109 brain .a 1310 to 1867 11 to 568   capped   558/567
(98 %)
0 diff
(100 %id)
CD637408   .a 1326 to 1482 1 to 157       157/164
(95 %)
6 diff
(96.4 %id)
CD637410   .a 1326 to 1482 1 to 157       157/164
(95 %)
5 diff
(97.0 %id)
CD637412   .a 1326 to 1482 1 to 158       158/165
(95 %)
9 diff
(94.6 %id)
TI_891527310   .a 1328 to 2428 1097 to 10     Submitted on the opposite strand 1088/1210
(89 %)
13 diff
(99.0 %id)
TI_891527311   .a 1328 to 2298 974 to 5     Submitted on the opposite strand 970/1241
(78 %)
5 diff
(99.6 %id)
BQ927066 carcinoma, cell line, Prostate .a 1332 to 2016 122 to 808       686/967
(70 %)
17 diff
(98.3 %id)
CD637409   .a 1333 to 1482 154 to 6       149/161
(92 %)
0 diff
(100 %id)
CD637411   .a 1333 to 1482 148 to 3       146/155
(94 %)
0 diff
(100 %id)
CD637413   .a 1333 to 1482 152 to 6       147/159
(92 %)
0 diff
(100 %id)
TI_891529770   .a 1447 to 2677 15 to 1232       1218/1262
(96 %)
17 diff
(98.7 %id)
BP286467 lung .a 1535 to 2116 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DB174865 kidney, tumor tissue .a 1682 to 2255 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
BU194092 melanotic melanoma, skin .a 1744 to 2580 1 to 844       844/868
(97 %)
18 diff
(98.0 %id)
AK091560 brain .a 1808 to 4927 1 to 3120   available from FLJ,   3120/3120
(100 %)
2 diff
(100.0 %id)
AX747060   .a 1808 to 4927 1 to 3120       3120/3120
(100 %)
2 diff
(100.0 %id)
DA511182 brain .a 1809 to 2363 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
TI_891529763   .a 1842 to 3039 1 to 1175       1154/1236
(93 %)
36 diff
(97.1 %id)
TI_891527309   .a 1850 to 2847 999 to 21     Submitted on the opposite strand 979/1125
(87 %)
14 diff
(98.8 %id)
BG747188 adenocarcinoma cell line, colon .a 1856 to 2531 1 to 676       676/677
(99 %)
2 diff
(99.8 %id)
DB097548 testis .a 1931 to 2456 2 to 528   capped   527/527
(100 %)
2 diff
(99.7 %id)
DA501436 brain .a 2008 to 2576 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
TI_891527308   .a 2014 to 3037 1030 to 9     Submitted on the opposite strand 1022/1201
(85 %)
2 diff
(99.9 %id)
TI_891529764   .a 2029 to 3148 13 to 1128       1116/1254
(88 %)
21 diff
(98.4 %id)
TI_891527307   .a 2251 to 3330 1103 to 23     Submitted on the opposite strand 1081/1228
(88 %)
9 diff
(99.3 %id)
BX640841 rectum tumor .a 2325 to 4927 1 to 2603   available from DKFZ, AAA   2603/2603
(100 %)
1 diff
(100.0 %id)
TI_891529765   .a 2343 to 3417 12 to 1077       1066/1228
(86 %)
17 diff
(98.7 %id)
TI_891529969   .a 2453 to 3635 1225 to 56     Submitted on the opposite strand 1170/1276
(91 %)
23 diff
(98.2 %id)
CD637415   .a 2457 to 3149 16 to 705       690/705
(97 %)
8 diff
(98.9 %id)
CD556175 embryonic trophoblasts, made from WA01 stemcells .a 2522 to 3063 12 to 553   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 542/572
(94 %)
7 diff
(98.8 %id)
DR004847 placenta .a 2526 to 3181 8 to 662       655/662
(98 %)
7 diff
(99.0 %id)
CD637414   .a 2614 to 3307 705 to 9       697/705
(98 %)
2 diff
(99.8 %id)
TI_891529766   .a 2630 to 3633 10 to 1014       1005/1220
(82 %)
13 diff
(99.0 %id)
BF333505 colon_normal .a 2688 to 2944 1 to 257       257/257
(100 %)
5 diff
(98.1 %id)
BM825763 Ascites, stomach .a 2799 to 3124 1 to 326       326/326
(100 %)
0 diff
(100 %id)
CB216694 normal endometrium, mid-secretory phase,cycle day 23, uterus .a 2840 to 3473 1 to 634       634/634
(100 %)
0 diff
(100 %id)
BQ924307 sciatic nerve .a 2875 to 3740 1 to 879       879/884
(99 %)
38 diff
(95.8 %id)
BP330317 rectum .a 2887 to 3469 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BE837838 prostate_normal .a 2907 to 3096 1 to 190       190/199
(95 %)
3 diff
(98.5 %id)
BG337876 leiomyosarcoma cell line, uterus .a 2939 to 3699 1 to 756       756/959
(78 %)
29 diff
(97.0 %id)
AK056863 Prostate .a 2970 to 4927 1 to 1958   available from FLJ,   1958/1958
(100 %)
4 diff
(99.8 %id)
DA867369 Prostate .a 2971 to 3496 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
BQ688711 ductal carcinoma, cell line, Pancreas .a 2976 to 3896 1 to 925   tiling clone,   925/925
(100 %)
12 diff
(98.8 %id)
BE844020 testis_normal .a 3045 to 3182 142 to 7       136/142
(95 %)
0 diff
(100 %id)
BE844031 testis_normal .a 3045 to 3175 163 to 33       131/163
(80 %)
0 diff
(100 %id)
BE938560 testis_normal .a 3045 to 3211 170 to 3       168/170
(98 %)
3 diff
(98.3 %id)
BU501329 eye, normal pigmented retinal epithelium .a 3052 to 3750 1 to 706       706/847
(83 %)
10 diff
(98.9 %id)
TI_891529767   .a 3077 to 3635 1 to 558       558/1219
(45 %)
11 diff
(99.1 %id)
BF337773 brain, glioblastoma with EGFR amplification .a 3091 to 3659 1 to 569       569/569
(100 %)
0 diff
(100 %id)
BQ921275 leiomyosarcoma, uterus .a 3179 to 4095 1 to 930       930/942
(98 %)
23 diff
(97.6 %id)
BF945689 nervous_normal .a 3191 to 3436 252 to 7     Submitted on the opposite strand 246/455
(54 %)
0 diff
(100 %id)
TI_891529768   .a 3235 to 3635 12 to 411       400/1254
(31 %)
13 diff
(99.0 %id)
AL050374 uterus .a 3254 to 4927 1 to 1674   tiling clone, available from DKFZ, AAA   1674/1674
(100 %)
2 diff
(99.9 %id)
CN429258 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 3304 to 3856 10 to 563       554/563
(98 %)
8 diff
(98.6 %id)
CD676008 eye, lens .a 3353 to 3661 1 to 309       309/309
(100 %)
0 diff
(100 %id)
BP316783 pericardium .a 3406 to 3988 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BE264905 lung, small cell carcinoma .a 3484 to 4042 1 to 575       575/576
(99 %)
23 diff
(96.1 %id)
BG818312 anaplastic oligodendroglioma with 1p/19qloss, brain .a 3569 to 4121 1 to 556       556/746
(74 %)
13 diff
(98.3 %id)
BM907248 large cell carcinoma, lung .a 3655 to 4522 1 to 876       876/952
(92 %)
12 diff
(98.8 %id)
BE271925 adenocarcinoma cell line, ovary .a 3683 to 4320 1 to 636       636/680
(93 %)
14 diff
(98.0 %id)
BI025137 marrow .a 3694 to 3816 138 to 16       123/138
(89 %)
0 diff
(100 %id)
BM006478 ductal carcinoma, cell line, Pancreas .a 3873 to 4501 1 to 642   fully sequenced,   642/642
(100 %)
28 diff
(95.7 %id)
TI_59395508   .a 3874 to 4501 70 to 710   fully sequenced,   641/641
(100 %)
27 diff
(95.8 %id)
BQ649901 hepatocellular carcinoma, cell line, Liver .a 3883 to 4756 1 to 878       878/963
(91 %)
27 diff
(97.2 %id)
CU452160 epidermis .a 3904 to 4562 19 to 677       659/677
(97 %)
6 diff
(99.2 %id)
BM716202 eye, RPE and Choroid .a 3912 to 4433 1 to 523   fully sequenced,   523/523
(100 %)
4 diff
(99.3 %id)
H58550 liver and spleen .a 3964 to 4378 1 to 421       421/421
(100 %)
9 diff
(97.9 %id)
T80739 liver and spleen .a 4011 to 4311 1 to 312       312/317
(98 %)
11 diff
(96.6 %id)
H48654 liver and spleen .a 4011 to 4347 1 to 342       342/394
(86 %)
6 diff
(98.5 %id)
DA457244 tongue, tumor tissue .a 4069 to 4647 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
AA495748 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4073 to 4473 11 to 411       401/411
(97 %)
6 diff
(98.6 %id)
AA325354 brain, cerebellum .a 4173 to 4540 1 to 370       370/371
(99 %)
4 diff
(99.0 %id)
BF805807 colon_ins .a 4286 to 4588 1 to 302       302/302
(100 %)
6 diff
(98.1 %id)
CB528358 Aveolar Macrophage, lung .a 4302 to 4927 644 to 19   AAA   626/626
(100 %)
0 diff
(100 %id)
BG337545 leiomyosarcoma cell line, uterus .a 4312 to 4927 1 to 615   AAA   615/615
(100 %)
2 diff
(99.7 %id)
BM796150 Ascites, stomach .a 4315 to 4719 1 to 405       405/405
(100 %)
4 diff
(99.1 %id)
W37199 lung .a 4320 to 4652 14 to 347       334/347
(96 %)
6 diff
(98.3 %id)
DB329698 Prostate .a 4327 to 4927 601 to 1       601/601
(100 %)
2 diff
(99.7 %id)
CD251354 brain, Pituitary .a 4374 to 4927 1 to 554   AAA   554/554
(100 %)
1 diff
(99.9 %id)
TI_151738473   .a 4374 to 4927 658 to 102   AAA   557/877
(63 %)
0 diff
(100 %id)
DB316118 brain .a 4381 to 4927 547 to 1       547/547
(100 %)
0 diff
(100 %id)
DB316317 brain .a 4382 to 4927 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
DB313709 tongue, tumor tissue .a 4387 to 4927 541 to 1       541/541
(100 %)
0 diff
(100 %id)
BU732181 eye, RPE and Choroid .a 4403 to 4927 543 to 19   fully sequenced, AAA   525/525
(100 %)
0 diff
(100 %id)
BM705501 eye, RPE and Choroid .a 4407 to 4736 1 to 330       330/330
(100 %)
1 diff
(99.7 %id)
BE326780 Kidney .a 4411 to 4928 520 to 3   tiling clone,   518/520
(99 %)
0 diff
(100 %id)
AI925916 Kidney .a 4445 to 4927 483 to 1       483/483
(100 %)
11 diff
(97.8 %id)
BF449003 Prostate .a 4448 to 4928 488 to 8       481/488
(98 %)
0 diff
(100 %id)
AW779706 Kidney .a 4451 to 4926 479 to 4       476/479
(99 %)
0 diff
(100 %id)
TI_157599470   .a 4452 to 4927 573 to 97   AAA   477/1281
(37 %)
7 diff
(99.5 %id)
BM716189 eye, RPE and Choroid .a 4459 to 4927 1 to 470   AAA   470/470
(100 %)
1 diff
(99.8 %id)
BM007050 ductal carcinoma, cell line, Pancreas .a 4471 to 4853 392 to 1   fully sequenced,   392/392
(100 %)
9 diff
(97.8 %id)
TI_59395509   .a 4471 to 4853 392 to 1   fully sequenced,   392/392
(100 %)
9 diff
(97.8 %id)
H58214 liver and spleen .a 4482 to 4919 444 to 1       444/446
(99 %)
17 diff
(96.2 %id)
AI870326 anaplastic oligodendroglioma, brain .a 4485 to 4927 445 to 1       445/445
(100 %)
2 diff
(99.6 %id)
BE328500 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 4487 to 4928 442 to 1       442/442
(100 %)
0 diff
(100 %id)
BE327740 carcinoid, lung .a 4487 to 4927 454 to 14   AAA   441/441
(100 %)
4 diff
(99.1 %id)
AI089316 uterus .a 4488 to 4928 443 to 3       441/443
(99 %)
0 diff
(100 %id)
AI129557 uterus .a 4488 to 4927 455 to 16   AAA   440/440
(100 %)
9 diff
(98.0 %id)
CF529144 placenta .a 4492 to 4927 453 to 18   AAA   436/436
(100 %)
1 diff
(99.8 %id)
AW235685 Kidney .a 4493 to 4927 445 to 11   AAA   435/435
(100 %)
4 diff
(99.1 %id)
AI288526 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4499 to 4927 429 to 1       429/429
(100 %)
1 diff
(99.8 %id)
AI374804   .a 4499 to 4927 441 to 13   AAA   429/429
(100 %)
2 diff
(99.6 %id)
AI478434 Kidney .a 4509 to 4927 436 to 18   AAA   419/419
(100 %)
4 diff
(99.1 %id)
BM798959 stomach .a 4514 to 4928 1 to 415   AAA   415/415
(100 %)
2 diff
(99.6 %id)
T80628 liver and spleen .a 4523 to 4923 420 to 7       414/489
(84 %)
0 diff
(100 %id)
AI369718 anaplastic oligodendroglioma, brain .a 4537 to 4927 391 to 1       391/391
(100 %)
0 diff
(100 %id)
AI498859 anaplastic oligodendroglioma, brain .a 4542 to 4927 386 to 1       386/386
(100 %)
0 diff
(100 %id)
AA495810.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4559 to 4927 386 to 18   AAA also hits gene LMO3 369/369
(100 %)
3 diff
(99.2 %id)
AA916312 pooled .a 4559 to 4928 371 to 2       370/371
(99 %)
0 diff
(100 %id)
AA992651   .a 4561 to 4928 370 to 4       367/370
(99 %)
0 diff
(100 %id)
AJ573410 pectoral muscle (after mastectomy) .a 4581 to 4920 1 to 340       340/340
(100 %)
2 diff
(99.5 %id)
AW237712 Kidney .a 4598 to 4928 336 to 6       331/336
(98 %)
0 diff
(100 %id)
AI380684 B-cell, chronic lymphotic leukemia .a 4639 to 4927 304 to 16   AAA   289/289
(100 %)
6 diff
(98.0 %id)
AI467890 pooled .a 4646 to 4928 287 to 5       283/287
(98 %)
0 diff
(100 %id)
AI767911 2 pooled tumors (clear cell type), Kidney .a 4650 to 4928 285 to 6       280/285
(98 %)
0 diff
(100 %id)
AI867601 Prostate .a 4695 to 4928 237 to 3       235/237
(99 %)
0 diff
(100 %id)
FN058237 breast carcinoma .a 4768 to 4867 1 to 100       100/100
(100 %)
0 diff
(100 %id)
AA910885 Kidney .a 4776 to 4927 155 to 4       152/155
(98 %)
0 diff
(100 %id)
BU626063 cell lines, Enchondroma .b 1 to 621 639 to 19 exact tiling clone, AAA   621/621
(100 %)
3 diff
(99.6 %id)
DB047165 testis .c-u 1 to 567 2 to 568 exact tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DB085729 testis .d 1 to 561 8 to 568 exact tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
DA102087 cerebellum Gene ABTB2, variant not shown       capped Suspected internal deletion, this clone was ignored    
BM682972 eye, fetal eye Gene ABTB2, variant not shown       AAA This clone was ignored    
BM718988 eye, fetal eye Gene ABTB2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI