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Gene ABCD4TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
429 supporting clones for gene ABCD4 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC332064 hippocampus .a -9 to 455 1 to 465       465/466
(99 %)
2 diff
(99.6 %id)
NM_005050.3   .a -9 to 3147 1 to 3157 exact RefSeq,   3157/3157
(100 %)
0 diff
(100 %id)
DC391734 Spleen .a 1 to 552 6 to 557       557/557
(100 %)
1 diff
(99.9 %id)
TI_57239858   .a 1 to 672 34 to 705       675/705
(95 %)
0 diff
(100 %id)
BI916327 brain .a 1 to 672 3 to 674   tiling clone,   674/674
(100 %)
0 diff
(100 %id)
DC332159 hippocampus .a 41 to 618 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
DC413446 lung, tumor tissue .a 41 to 607 1 to 567       567/567
(100 %)
1 diff
(99.9 %id)
DB446985 testis .a 61 to 495 1 to 435       435/435
(100 %)
3 diff
(99.4 %id)
DC387719 small intestine .a 74 to 614 1 to 542       542/542
(100 %)
2 diff
(99.7 %id)
DC294966 synovial membrane tissue from rheumatioidarthritis .a 76 to 624 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
DC411717 kidney, tumor tissue .a 76 to 642 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DC386211   .a 79 to 639 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
DC302092   .a 82 to 633 1 to 552       552/552
(100 %)
1 diff
(99.9 %id)
DC342836 thalamus .a 84 to 677 1 to 595       595/595
(100 %)
1 diff
(99.9 %id)
DC374865 brain .a 85 to 655 1 to 572       572/573
(99 %)
4 diff
(99.4 %id)
DC384423   .a 85 to 619 1 to 535       535/535
(100 %)
1 diff
(99.9 %id)
DC407205 thymus .a 85 to 637 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
DA454034 tongue, tumor tissue .a 90 to 559 2 to 471   capped   470/470
(100 %)
2 diff
(99.6 %id)
DA700675   .a 90 to 614 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
AF009746   .a 91 to 2978 1 to 2887 exact tiling clone, AAA Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base) 2887/2887
(100 %)
12 diff
(99.6 %id)
DA867820 Prostate .a 96 to 631 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA031152   .a 97 to 658 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA077049 cerebellum .a 98 to 669 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA435364 tongue, tumor tissue .a 99 to 669 2 to 572   capped   571/571
(100 %)
4 diff
(99.3 %id)
DA047979   .a 100 to 693 2 to 596   capped   595/595
(100 %)
2 diff
(99.7 %id)
DA489660 brain .a 100 to 670 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DB458416 testis .a 104 to 581 1 to 478       478/478
(100 %)
0 diff
(100 %id)
DA155943 amygdala .a 105 to 603 2 to 500   capped   499/499
(100 %)
0 diff
(100 %id)
BG715938 brain, hypothalamus .a 105 to 919 7 to 821       815/822
(99 %)
10 diff
(98.8 %id)
BI913671 brain .a 105 to 992 1 to 899       896/978
(91 %)
22 diff
(97.8 %id)
TI_57241436   .a 105 to 992 28 to 926       896/1005
(89 %)
21 diff
(98.0 %id)
BM763181 myeloma .a 116 to 706 1 to 591       591/591
(100 %)
5 diff
(99.2 %id)
BM847017 myeloma .a 116 to 645 1 to 529       529/529
(100 %)
6 diff
(98.9 %id)
AL711782 human skeletal muscle .a 120 to 662 1 to 543       543/543
(100 %)
2 diff
(99.7 %id)
BX951214   .a 120 to 381 1 to 262       262/262
(100 %)
2 diff
(99.3 %id)
AK291332 tongue .a 121 to 2307 1 to 2187 G594V tiling clone,   2187/2187
(100 %)
3 diff
(99.9 %id)
DA028017   .a 121 to 675 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA008303 adipose .a 122 to 680 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA145359 amygdala .a 122 to 678 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA419454 cord Blood .a 122 to 675 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA488841 brain .a 122 to 690 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA539280 Kidney .a 122 to 710 2 to 590   capped   589/589
(100 %)
3 diff
(99.5 %id)
DA633934 Kidney .a 122 to 701 2 to 581   capped   580/581
(99 %)
3 diff
(99.5 %id)
DA711261   .a 122 to 677 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA765085 tongue .a 122 to 682 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA786878 brain .a 122 to 707 2 to 587   capped   586/587
(99 %)
2 diff
(99.7 %id)
DA877432 Prostate .a 122 to 704 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA889388   .a 122 to 614 2 to 494   capped   493/493
(100 %)
1 diff
(99.8 %id)
DA984536 synovial membrane tissue from rheumatioidarthritis .a 122 to 614 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
DB096512 testis .a 122 to 636 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
BM908111 brain, medulla .a 129 to 1077 19 to 974       956/1071
(89 %)
27 diff
(97.5 %id)
BX334096 Neuroblastoma Cot 50-normalized .a 134 to 1251 1 to 1124       1124/1127
(99 %)
46 diff
(96.0 %id)
BF307597 muscle, rhabdomyosarcoma .a 136 to 754 1 to 616       616/616
(100 %)
5 diff
(99.2 %id)
BC012815 Muscle, rhabdomyosarcoma .a 137 to 2446 1 to 2310 A304T E368K tiling clone, available from MGC, AAA   2310/2310
(100 %)
4 diff
(99.9 %id)
BE300424 muscle, rhabdomyosarcoma .a 137 to 733 44 to 648       605/649
(93 %)
15 diff
(97.7 %id)
BI765633 pooled colon, kidney, stomach .a 141 to 925 22 to 802       781/802
(97 %)
4 diff
(99.6 %id)
TI_57146967   .a 141 to 925 22 to 802       781/802
(97 %)
4 diff
(99.6 %id)
BT007412   .a 143 to 1961 1 to 1819       1819/1821
(99 %)
5 diff
(99.8 %id)
CR457104   .a 143 to 1959 1 to 1817       1817/1821
(99 %)
5 diff
(99.8 %id)
TI_57232415   .a 145 to 983 39 to 879       839/879
(95 %)
11 diff
(98.8 %id)
DN996509 breast cancer, Mammary gland (cancer tissue) .a 147 to 772 4 to 629       626/629
(99 %)
1 diff
(99.9 %id)
BI907434 leukocyte .a 149 to 983 1 to 837       835/837
(99 %)
11 diff
(98.7 %id)
BX334095 Neuroblastoma Cot 50-normalized .a 1263 to 2417 1153 to 1       1153/1153
(100 %)
52 diff
(95.5 %id)
BE299589 muscle, rhabdomyosarcoma .a 1716 to 2326 709 to 82       628/1196
(52 %)
17 diff
(98.6 %id)
DB464785 hippocampus .b 1 to 443 6 to 448   tiling clone,   448/448
(100 %)
2 diff
(99.6 %id)
DB470001 hippocampus .b 1 to 446 6 to 442       444/446
(99 %)
25 diff
(94.4 %id)
DC384236 Prostate .b 8 to 577 1 to 570       570/570
(100 %)
0 diff
(100 %id)
AK297934   .b 18 to 1787 1 to 1770   tiling clone,   1770/1770
(100 %)
10 diff
(99.5 %id)
DC357523   .b 18 to 565 1 to 548       548/548
(100 %)
4 diff
(99.3 %id)
DC299339   .b 19 to 581 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
DC365140   .b 28 to 455 1 to 428       428/565
(75 %)
4 diff
(99.3 %id)
DC365145   .b 28 to 455 1 to 428       428/460
(93 %)
5 diff
(99.0 %id)
DC300980 bladder .b 31 to 370 1 to 340       340/340
(100 %)
0 diff
(100 %id)
DC301133 bladder .b 46 to 604 1 to 559       559/559
(100 %)
0 diff
(100 %id)
DC340043 thalamus .b 51 to 595 1 to 545       545/545
(100 %)
3 diff
(99.5 %id)
DC316288 amygdala .b 53 to 491 1 to 439       439/439
(100 %)
0 diff
(100 %id)
DC339008 subthalamic nucleus .b 53 to 625 1 to 573   tiling clone,   573/573
(100 %)
0 diff
(100 %id)
DC366892   .b 53 to 536 1 to 484       484/484
(100 %)
1 diff
(99.8 %id)
BX336600 Placenta Cot 25-normalized .c 1 to 1031 12 to 1031   tiling clone,   1020/1031
(98 %)
13 diff
(98.8 %id)
BG034198 breast, mammary adenocarcinoma, cell line .c 870 to 1559 1 to 681   tiling clone,   681/956
(71 %)
19 diff
(98.1 %id)
BX336599 Placenta Cot 25-normalized .c 1417 to 2390 970 to 1   tiling clone,   970/970
(100 %)
65 diff
(93.3 %id)
BM793755 Ascites, stomach .c 1494 to 1746 1 to 253   tiling clone,   253/256
(98 %)
21 diff
(91.8 %id)
BF091501 testis_normal .c 1803 to 2032 1 to 229       229/234
(97 %)
4 diff
(98.3 %id)
NR_003256.2   .d -9 to 3019 1 to 3029 exact RefSeq, tiling clone,   3029/3029
(100 %)
0 diff
(100 %id)
DA950403 Spleen .d 1 to 576 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA713794   .d 58 to 612 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA585708 lung .d 61 to 656 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA771456 brain .d 61 to 641 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB206785 trachea .d 61 to 644 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
AU099025   .d 79 to 377 1 to 300       300/300
(100 %)
3 diff
(99.0 %id)
AU104062   .d 89 to 138 1 to 50       50/50
(100 %)
0 diff
(100 %id)
DA421891 cervix .d 97 to 658 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA872781 Prostate .d 97 to 659 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB288993 uterus .d 97 to 634 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
BI489886 pooled brain, lung, testis .d 103 to 656 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
TI_43960552   .d 103 to 656 69 to 621       553/621
(89 %)
1 diff
(99.9 %id)
DB484303 hypothalamus .d 104 to 458 1 to 355       355/355
(100 %)
1 diff
(99.8 %id)
DA148124 amygdala .d 105 to 667 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BX416997 placenta .d 105 to 1042 1 to 936       936/936
(100 %)
2 diff
(99.8 %id)
BG706630 brain, hypothalamus .d 105 to 796 7 to 697       691/697
(99 %)
1 diff
(99.9 %id)
BG715756 brain, hypothalamus .d 105 to 799 7 to 701       695/701
(99 %)
0 diff
(100 %id)
AK308382 trachea .d 110 to 1951 1 to 1842 exact     1842/1842
(100 %)
0 diff
(100 %id)
DB205890 trachea .d 111 to 714 2 to 605   capped   604/604
(100 %)
0 diff
(100 %id)
DA051115   .d 122 to 595 2 to 475   capped   474/474
(100 %)
0 diff
(100 %id)
DA258663 caudate nucleus .d 122 to 673 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA371014 thalamus .d 122 to 639 2 to 519   capped   518/518
(100 %)
1 diff
(99.9 %id)
DA742747   .d 122 to 658 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DA875396 Prostate .d 122 to 658 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA975978 synovial membrane tissue from rheumatioidarthritis .d 122 to 675 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB112124 thymus .d 122 to 703 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
CB265725 adipose .d 123 to 303 1 to 181       181/184
(98 %)
3 diff
(98.4 %id)
DA256567 caudate nucleus .d 124 to 694 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
AL556424 placenta .d 125 to 1070 9 to 954       946/954
(99 %)
10 diff
(99.0 %id)
CN310646 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 131 to 828 1 to 696       696/697
(99 %)
3 diff
(99.6 %id)
BX376169 Neuroblastoma Cot 25-normalized .d 138 to 338 21 to 221       201/221
(90 %)
2 diff
(99.1 %id)
BI914581 brain .d 139 to 950 1 to 823       823/900
(91 %)
22 diff
(97.6 %id)
TI_57240852   .d 139 to 950 32 to 854       823/931
(88 %)
20 diff
(97.9 %id)
AA300616 testis .d 158 to 373 1 to 216       216/216
(100 %)
1 diff
(99.6 %id)
BF758315 colon .d 252 to 493 239 to 1     Submitted on the opposite strand 239/257
(92 %)
8 diff
(96.9 %id)
DA873787 Prostate .d 305 to 867 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
CN310643 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 318 to 940 1 to 623       623/623
(100 %)
0 diff
(100 %id)
DA887266   .d 333 to 886 2 to 555   capped   554/554
(100 %)
4 diff
(99.3 %id)
BQ893869 epidermoid carcinoma, cell line, salivary gland .d 405 to 1260 1 to 856       856/861
(99 %)
9 diff
(99.0 %id)
BM023408 Islets of Langerhans, Pancreas .d 425 to 930 8 to 514       507/533
(95 %)
8 diff
(98.5 %id)
CA842464 Pancreas, Purified pancreatic islet .d 452 to 1076 1 to 625       625/625
(100 %)
5 diff
(99.2 %id)
DA034886 breast .d 540 to 1112 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
BE259331 eye, retinoblastoma .d 552 to 1265 1 to 708       708/708
(100 %)
20 diff
(97.2 %id)
BE257593 eye, retinoblastoma .d 552 to 1238 1 to 681       681/683
(99 %)
15 diff
(97.9 %id)
BF529984 anaplastic oligodendroglioma with 1p/19qloss, brain .d 554 to 1262 1 to 710       710/867
(81 %)
13 diff
(98.6 %id)
BF932980 nervous_tumor .d 556 to 970 28 to 449       428/450
(95 %)
16 diff
(96.5 %id)
T08166   .d 559 to 873 1 to 312       312/312
(100 %)
4 diff
(98.8 %id)
DA587822 lung .d 625 to 1203 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
BX372074   .d 708 to 1642 935 to 1       933/935
(99 %)
14 diff
(98.6 %id)
BQ899300 dorsal root ganglia .d 712 to 1520 1 to 816       816/958
(85 %)
14 diff
(98.6 %id)
BM911527 amelanotic melanoma, cell line, skin .d 762 to 1311 1 to 554       554/1280
(43 %)
7 diff
(99.5 %id)
BE256653 eye, retinoblastoma .d 780 to 1431 1 to 651       651/783
(83 %)
9 diff
(98.9 %id)
CN310644 embryonic stem cells, cell lines H1, H7, andH9 .d 788 to 1425 15 to 652       638/652
(97 %)
3 diff
(99.6 %id)
CX757941 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d 854 to 1648 1 to 785     Submitted on the opposite strand 785/815
(96 %)
16 diff
(98.1 %id)
CV380378 nervous_normal .d 872 to 1524 1 to 650       650/656
(99 %)
20 diff
(97.0 %id)
T18936   .d 896 to 1255 1 to 360       360/360
(100 %)
8 diff
(97.8 %id)
AJ708487 heart .d 979 to 1520 12 to 553       542/553
(98 %)
1 diff
(99.9 %id)
BX398877 Placenta Cot 25-normalized .d 1003 to 1530 1 to 526       524/898
(58 %)
16 diff
(98.3 %id)
BF984244 duodenal adenocarcinoma, cell line, small intestine .d 1018 to 1763 1 to 749       749/811
(92 %)
16 diff
(98.1 %id)
W92104.
matches multiple genes
liver and spleen .d 1058 to 1629 1 to 591     also hits gene blarbar 600/595
(100 %)
76 diff
(87.3 %id)
AA471296   .d 1125 to 1342 1 to 221       221/227
(97 %)
18 diff
(92.1 %id)
TI_57233407   .d 1164 to 1886 25 to 749       725/749
(96 %)
3 diff
(99.6 %id)
BI906927 leukocyte .d 1167 to 1886 1 to 722       722/722
(100 %)
3 diff
(99.6 %id)
BX398884 Placenta Cot 25-normalized .d 1198 to 2291 1084 to 6       1079/1089
(99 %)
29 diff
(97.4 %id)
BE041543 pooled .d 1219 to 1556 138 to 478     Submitted on the opposite strand 341/478
(71 %)
6 diff
(98.8 %id)
AW663375 pooled .d 1220 to 1556 1 to 337     Submitted on the opposite strand 337/337
(100 %)
11 diff
(96.8 %id)
BF082918 colon_ins .d 1324 to 1435 123 to 15       109/123
(88 %)
0 diff
(100 %id)
BF082923 colon_ins .d 1324 to 1433 127 to 19       109/127
(85 %)
0 diff
(100 %id)
AL574660 placenta, Placenta Cot 25-normalized .d 1341 to 2296 948 to 1       948/948
(100 %)
10 diff
(99.0 %id)
BX361764   .d 1341 to 2286 938 to 1       938/1044
(89 %)
10 diff
(99.1 %id)
CN310645 embryonic stem cells, DMSO-treated H9 cellline .d 1465 to 2113 1 to 652       655/652
(100 %)
6 diff
(99.1 %id)
BM702194 eye, optic nerve .d 1477 to 1797 1 to 319   fully sequenced,   319/319
(100 %)
0 diff
(100 %id)
BQ640142 eye, retina .d 1481 to 2003 1 to 522       522/522
(100 %)
1 diff
(99.9 %id)
BE877945 large cell carcinoma, undifferentiated, lung .d 1489 to 2262 1 to 771       771/904
(85 %)
30 diff
(96.7 %id)
BI490539 pooled brain, lung, testis .d 1490 to 2262 777 to 4       774/778
(99 %)
5 diff
(99.4 %id)
TI_43960553   .d 1490 to 2262 777 to 4       774/778
(99 %)
5 diff
(99.4 %id)
AV721340 hypothalamus .d 1498 to 2165 1 to 664       664/742
(89 %)
11 diff
(98.6 %id)
TI_149309348   .d 1520 to 2325 907 to 108       800/1034
(77 %)
12 diff
(98.9 %id)
TI_149315298   .d 1522 to 2327 881 to 84   AAA   798/984
(81 %)
13 diff
(98.7 %id)
BX376168 Neuroblastoma Cot 25-normalized .d 1524 to 2295 770 to 1       770/770
(100 %)
2 diff
(99.8 %id)
BX351981 Placenta Cot 25-normalized .d 1573 to 2323 749 to 1       749/862
(86 %)
12 diff
(98.7 %id)
AW752126 colon .d 1592 to 1996 408 to 3       406/408
(99 %)
4 diff
(99.1 %id)
TI_45235496   .d 1594 to 2298 47 to 753   fully sequenced,   707/753
(93 %)
5 diff
(99.4 %id)
BI517300 pooled colon, kidney, stomach .d 1600 to 2298 1 to 702   fully sequenced,   702/702
(100 %)
5 diff
(99.3 %id)
W76618 heart .d 1605 to 1852 1 to 247   fully sequenced,   247/247
(100 %)
2 diff
(99.2 %id)
AA699985 liver and spleen .d 1607 to 2314 708 to 1       708/709
(99 %)
26 diff
(96.4 %id)
BI517924 pooled colon, kidney, stomach .d 1620 to 2261 657 to 14   fully sequenced,   644/657
(98 %)
9 diff
(98.7 %id)
TI_45235497   .d 1620 to 2261 657 to 14   fully sequenced,   644/657
(98 %)
9 diff
(98.7 %id)
TI_57147474   .d 1632 to 2300 77 to 746       670/938
(71 %)
6 diff
(99.4 %id)
BQ045202 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 1634 to 2327 712 to 19   AAA   694/694
(100 %)
1 diff
(99.9 %id)
BM680300 eye, fetal eye .d 1634 to 2324 709 to 19   AAA   691/691
(100 %)
1 diff
(99.9 %id)
BU621461 cell lines, Chondrosarcoma .d 1634 to 2327 712 to 19   AAA   694/694
(100 %)
0 diff
(100 %id)
AI589044 brain, glioblastoma (pooled) .d 1639 to 2326 688 to 1       688/692
(99 %)
15 diff
(97.9 %id)
BI759982 pooled colon, kidney, stomach .d 1640 to 2300 1 to 662       662/854
(77 %)
6 diff
(99.3 %id)
AI221116 pooled .d 1648 to 2314 668 to 1       668/675
(98 %)
6 diff
(99.2 %id)
BQ183989 Knee, Osteoarthritic Cartilage .d 1648 to 2311 683 to 19   AAA   665/671
(99 %)
1 diff
(99.9 %id)
TI_149309027   .d 1649 to 2312 748 to 85   AAA   664/967
(68 %)
1 diff
(99.9 %id)
BU687463 lung .d 1649 to 2312 682 to 19   AAA   664/680
(97 %)
1 diff
(99.9 %id)
AW339051 adenocarcinoma, Pancreas .d 1662 to 2314 665 to 13   AAA   653/653
(100 %)
1 diff
(99.9 %id)
BU687751 lung .d 1667 to 2325 676 to 18       659/676
(97 %)
0 diff
(100 %id)
CX868515 embryonic stem .d 1670 to 2333 1 to 664   fully sequenced,   664/664
(100 %)
3 diff
(99.6 %id)
BU732586 eye, optic nerve .d 1676 to 2324 666 to 19   AAA   648/648
(100 %)
2 diff
(99.7 %id)
AW189139 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 1704 to 2327 625 to 1       625/625
(100 %)
8 diff
(98.8 %id)
CD694414 normal nasopharynx .d 1717 to 2202 17 to 502       486/502
(96 %)
1 diff
(99.9 %id)
BQ082661 stomach .d 1729 to 2100 1 to 371       371/371
(100 %)
2 diff
(99.5 %id)
CX868433 embryonic stem .d 1736 to 2327 619 to 28   fully sequenced, AAA   592/592
(100 %)
1 diff
(99.9 %id)
BM664889 eye, optic nerve .d 1736 to 2185 467 to 19   fully sequenced, AAA   449/449
(100 %)
1 diff
(99.8 %id)
AA485483 lung .d 1754 to 2084 1 to 329   fully sequenced,   329/329
(100 %)
3 diff
(99.1 %id)
AA904273 lung, small cell carcinoma .d 1755 to 2314 582 to 22   AAA   561/561
(100 %)
10 diff
(98.3 %id)
AI590384 adenocarcinoma, Pancreas .d 1758 to 2314 581 to 25   AAA   557/609
(91 %)
6 diff
(99.1 %id)
DB376008 placenta .d 1765 to 2323 559 to 1       559/582
(96 %)
12 diff
(98.0 %id)
AI564438 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .d 1767 to 2321 555 to 1       555/555
(100 %)
0 diff
(100 %id)
AW515395 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 1767 to 2295 532 to 1       532/559
(95 %)
3 diff
(99.5 %id)
AJ711122 heart .d 1770 to 2305 1 to 534       534/534
(100 %)
2 diff
(99.7 %id)
AI884321 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 1776 to 2325 550 to 1       550/559
(98 %)
0 diff
(100 %id)
W37859 parathyroid gland, parathyroid tumor .d 1782 to 2207 1 to 435       435/435
(100 %)
24 diff
(94.5 %id)
BX329654 Neuroblastoma Cot 25-normalized .d 1794 to 2312 517 to 2       516/549
(93 %)
0 diff
(100 %id)
BP398119 pancreatic islet .d 1797 to 2295 1 to 499     Submitted on the opposite strand 499/499
(100 %)
0 diff
(100 %id)
W95059.
matches multiple genes
liver and spleen .d 1817 to 2314 504 to 1     also hits gene blarbar 504/512
(98 %)
22 diff
(95.8 %id)
W72656 heart .d 1822 to 2319 505 to 5   fully sequenced,   501/505
(99 %)
14 diff
(97.3 %id)
BM983992 lung, Primary Lung Epithelial Cells .d 1822 to 2325 521 to 18       504/521
(96 %)
0 diff
(100 %id)
BP398230 pancreatic islet .d 1825 to 2324 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
DB568922 hypothalamus .d 1830 to 2324 1 to 495     Submitted on the opposite strand 495/495
(100 %)
0 diff
(100 %id)
AI272299 brain, oligodendroglioma .d 1834 to 2242 409 to 1       409/409
(100 %)
0 diff
(100 %id)
DB572210 hypothalamus .d 1853 to 2324 1 to 472     Submitted on the opposite strand 472/472
(100 %)
0 diff
(100 %id)
N65934 multi-tissue, pooled .d 1859 to 2077 223 to 5       219/227
(96 %)
0 diff
(100 %id)
DB523914 testis .d 1859 to 2314 1 to 456     Submitted on the opposite strand 456/456
(100 %)
0 diff
(100 %id)
AA778504   .d 1861 to 2280 424 to 1       424/430
(98 %)
28 diff
(93.5 %id)
AA856604 Kidney .d 1861 to 2313 454 to 2       453/454
(99 %)
0 diff
(100 %id)
AI377459   .d 1862 to 2314 461 to 9       453/461
(98 %)
0 diff
(100 %id)
AI357397 brain, glioblastoma (pooled) .d 1866 to 2295 441 to 12   AAA   430/430
(100 %)
0 diff
(100 %id)
DB531115 hippocampus .d 1868 to 2314 1 to 446     Submitted on the opposite strand 446/446
(100 %)
5 diff
(98.9 %id)
AI051926 parathyroid gland, parathyroid tumor .d 1874 to 2318 451 to 8       444/451
(98 %)
0 diff
(100 %id)
DB553244 hypothalamus .d 1876 to 2310 1 to 434     Submitted on the opposite strand 434/435
(99 %)
4 diff
(99.1 %id)
FN162078 breast carcinoma .d 1879 to 1942 1 to 65       65/66
(98 %)
2 diff
(97.0 %id)
CR745783 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 1884 to 2324 455 to 15   AAA   441/442
(99 %)
0 diff
(100 %id)
DB559419 hypothalamus .d 1884 to 2310 1 to 426     Submitted on the opposite strand 426/427
(99 %)
5 diff
(98.9 %id)
DB537844 hippocampus .d 1885 to 2314 1 to 430     Submitted on the opposite strand 430/430
(100 %)
14 diff
(96.8 %id)
AI356500 B-cell, chronic lymphotic leukemia .d 1889 to 2313 427 to 1       427/435
(98 %)
11 diff
(97.5 %id)
AI141839 heart .d 1891 to 2325 435 to 1       435/435
(100 %)
0 diff
(100 %id)
AW292856   .d 1893 to 2324 449 to 18   AAA   432/436
(99 %)
3 diff
(99.4 %id)
AI361602 brain, glioblastoma (pooled) .d 1895 to 2314 420 to 1       420/420
(100 %)
1 diff
(99.8 %id)
DB512137 testis .d 1899 to 2312 1 to 413     Submitted on the opposite strand 413/415
(99 %)
4 diff
(99.1 %id)
CB242441 Human Lung Epithelial cells, lung .d 1903 to 2314 430 to 19   AAA   412/412
(100 %)
14 diff
(96.7 %id)
AI278381 placenta .d 1923 to 2326 410 to 7       404/410
(98 %)
0 diff
(100 %id)
R02189 liver and spleen .d 1931 to 2320 408 to 9       400/428
(93 %)
0 diff
(100 %id)
BF197734 skin, normal, 4 pooled samples .d 1937 to 2314 379 to 2       378/379
(99 %)
0 diff
(100 %id)
AA745795 Kidney .d 1939 to 2314 390 to 14   AAA   377/377
(100 %)
3 diff
(99.3 %id)
AW244105 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .d 1944 to 2314 376 to 6       371/376
(98 %)
0 diff
(100 %id)
CN310647 embryonic stem cells, cell lines H1, H7, andH9 .d 1948 to 2285 339 to 1     Submitted on the opposite strand 339/339
(100 %)
1 diff
(99.8 %id)
AI351142 pooled germ cell tumors .d 1949 to 2308 377 to 18       360/377
(95 %)
0 diff
(100 %id)
AA640090 lung, lung tumor .d 1950 to 2323 374 to 1       374/374
(100 %)
0 diff
(100 %id)
AW243021 Kidney .d 1951 to 2314 372 to 9       364/374
(97 %)
0 diff
(100 %id)
BM698459 eye, fetal eyes .d 1951 to 2440 1 to 490   fully sequenced, Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base) 490/490
(100 %)
0 diff
(100 %id)
AA001358 liver and spleen .d 1957 to 2325 371 to 2       370/383
(96 %)
0 diff
(100 %id)
AI954200 malignant melanoma, metastatic to lymphnode, skin .d 1985 to 2324 399 to 60   AAA   340/340
(100 %)
12 diff
(96.5 %id)
AI240140 pooled .d 1988 to 2247 279 to 20   AAA   260/260
(100 %)
3 diff
(98.9 %id)
AA769784   .d 1990 to 2314 331 to 7       325/331
(98 %)
0 diff
(100 %id)
AA907773 lung, small cell carcinoma .d 1990 to 2314 345 to 21   AAA   325/325
(100 %)
0 diff
(100 %id)
AA922949 adenocarcinoma, colon .d 1990 to 2314 325 to 1       325/325
(100 %)
1 diff
(99.7 %id)
AI340111 adenocarcinoma, colon .d 1994 to 2323 330 to 1       330/330
(100 %)
1 diff
(99.7 %id)
AI340112 adenocarcinoma, colon .d 1994 to 2323 330 to 1       330/330
(100 %)
1 diff
(99.7 %id)
AW298546   .d 2004 to 2314 328 to 18   AAA   311/311
(100 %)
1 diff
(99.7 %id)
AI434803 Kidney .d 2005 to 2325 324 to 4       321/324
(99 %)
0 diff
(100 %id)
AW772306 Kidney .d 2005 to 2325 324 to 4       321/324
(99 %)
0 diff
(100 %id)
AA939119 pooled .d 2022 to 2298 277 to 1       277/277
(100 %)
0 diff
(100 %id)
F09055 brain, total brain .d 2028 to 2313 286 to 1       286/286
(100 %)
1 diff
(99.7 %id)
AI559801 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 2039 to 2295 257 to 1       257/257
(100 %)
0 diff
(100 %id)
AA906460 pooled .d 2040 to 2314 277 to 3       275/277
(99 %)
0 diff
(100 %id)
T31528 colon, embryo .d 2040 to 2324 285 to 1     Submitted on the opposite strand 285/285
(100 %)
0 diff
(100 %id)
AI491830 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 2050 to 2323 276 to 3       274/278
(98 %)
0 diff
(100 %id)
AA485326 lung .d 2054 to 2312 259 to 1   fully sequenced,   259/259
(100 %)
0 diff
(100 %id)
AI243986 Kidney .d 2056 to 2242 187 to 1       187/187
(100 %)
0 diff
(100 %id)
AA553680 colon .d 2063 to 2314 259 to 8       252/259
(97 %)
0 diff
(100 %id)
AA815145 germinal center B cell .d 2086 to 2316 248 to 18   AAA   231/231
(100 %)
1 diff
(99.6 %id)
Z21904   .d 2104 to 2314 217 to 8       210/217
(96 %)
0 diff
(100 %id)
AW131391 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 2122 to 2314 203 to 11   AAA   193/193
(100 %)
1 diff
(99.5 %id)
AA862136 squamous cell carcinoma from base of tongue, tongue .d 2146 to 2314 175 to 7       169/175
(96 %)
0 diff
(100 %id)
AI383736   .d 2148 to 2323 181 to 6       176/181
(97 %)
0 diff
(100 %id)
FN077145 breast carcinoma .d 2150 to 2201 52 to 1     Submitted on the opposite strand 52/52
(100 %)
0 diff
(100 %id)
AI468988 lymph node, lymphoma, follicular mixed small and largecell .d 2176 to 2324 162 to 14   AAA   149/149
(100 %)
2 diff
(98.7 %id)
AI590893 ovary, tumor, 5 pooled (see description) .d 2188 to 2314 127 to 1       127/127
(100 %)
0 diff
(100 %id)
C01003   .d 2190 to 2314 1 to 125       125/125
(100 %)
0 diff
(100 %id)
CQ958224   .d 2391 to 2850 1 to 460   AAA Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base) 460/460
(100 %)
2 diff
(99.6 %id)
CQ958227   .d 2391 to 2871 500 to 20     Submitted on the opposite strand 481/500
(96 %)
0 diff
(100 %id)
BM667379 eye, fetal eyes .d 2410 to 2871 480 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base) 462/462
(100 %)
1 diff
(99.8 %id)
BF062605 colon, colon tumor, RER+ .d 2486 to 3019 534 to 1       534/534
(100 %)
0 diff
(100 %id)
AI056015 parathyroid gland, parathyroid tumor .d 2504 to 2871 377 to 11   AAA Possibly primed on the genome, locally A rich (16/20 A in genome downstream of last aligned base) 367/378
(97 %)
0 diff
(100 %id)
AW237308 Kidney .d 2570 to 3019 450 to 1       450/450
(100 %)
0 diff
(100 %id)
AU137038 placenta .e -9 to 677 2 to 689   tiling clone, capped   688/688
(100 %)
12 diff
(98.3 %id)
BU177268 melanotic melanoma, skin .e 29 to 866 1 to 843   tiling clone,   841/843
(99 %)
4 diff
(99.6 %id)
BX382349 Placenta Cot 25-normalized .e 40 to 732 1 to 687       687/840
(81 %)
9 diff
(99.0 %id)
BX382348 Placenta Cot 25-normalized .e 1290 to 2225 936 to 1   tiling clone,   936/936
(100 %)
8 diff
(99.2 %id)
CR593192 HeLa cells Cot 25-normalized .f 1 to 2333 4 to 2336 exact tiling clone,   2336/2336
(100 %)
0 diff
(100 %id)
DT220843 brain .f 1239 to 1936 1 to 698       698/698
(100 %)
6 diff
(99.2 %id)
BX098218 liver and spleen .f 1261 to 1968 1 to 706       706/706
(100 %)
8 diff
(98.9 %id)
U66690   .f 1261 to 2891 1 to 1469       1386/1469
(94 %)
40 diff
(97.3 %id)
H50978 liver and spleen .f 1262 to 1709 1 to 463       463/465
(99 %)
26 diff
(94.5 %id)
AL556423 placenta .f 1372 to 2333 962 to 1       962/962
(100 %)
11 diff
(98.9 %id)
TI_149314482   .f 1528 to 2382 939 to 92   AAA   848/982
(86 %)
17 diff
(98.3 %id)
BG292074 bladder, transitional cell papilloma, cell line .f 1604 to 2333 1 to 724       724/873
(82 %)
34 diff
(96.2 %id)
TI_154132386   .f 1669 to 2354 749 to 57       693/976
(71 %)
0 diff
(100 %id)
W28686 eye, retina .f 1669 to 1939 26 to 295       270/495
(54 %)
3 diff
(99.4 %id)
BQ006658 Chondrosarcoma, Left Pelvis .f 1672 to 2365 712 to 19   AAA   694/694
(100 %)
4 diff
(99.5 %id)
CB306117 lung, Primary Lung Cystic Fibrosis EpithelialCells .f 1673 to 2382 728 to 19   tiling clone, AAA   710/710
(100 %)
2 diff
(99.8 %id)
TI_149283104   .f 1674 to 2376 819 to 124   tiling clone,   696/889
(78 %)
0 diff
(100 %id)
BE834285 ovary .f 1682 to 2202 525 to 7       519/525
(98 %)
0 diff
(100 %id)
H51632 liver and spleen .f 2539 to 2891 366 to 1   tiling clone,   366/376
(97 %)
19 diff
(95.0 %id)
DA528582 brain .g 1 to 592 2 to 593   tiling clone, capped   592/592
(100 %)
1 diff
(99.9 %id)
AA418154 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 499 to 995 1 to 494   tiling clone,   494/494
(100 %)
6 diff
(98.8 %id)
AA417984 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .g 1645 to 2158 515 to 2   tiling clone,   514/515
(99 %)
0 diff
(100 %id)
BX247984 fetal brain .h 1 to 966 1 to 966   tiling clone,   966/966
(100 %)
0 diff
(100 %id)
BX420591 brain, fetal brain .h 1 to 986 1 to 980       980/1025
(95 %)
14 diff
(98.7 %id)
CV810581 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .h 242 to 995 1 to 754   tiling clone,   754/754
(100 %)
4 diff
(99.5 %id)
BM721155 eye, fetal eye .h 247 to 871 4 to 629       629/629
(100 %)
1 diff
(99.9 %id)
BM542388 melanotic melanoma, skin .h 937 to 1749 21 to 840   tiling clone,   820/1010
(81 %)
16 diff
(98.5 %id)
BM679578 eye, fetal eye .h 1295 to 1972 696 to 19   tiling clone, AAA   678/678
(100 %)
1 diff
(99.9 %id)
BX248053 placenta .i 1 to 940 1 to 940   tiling clone,   940/940
(100 %)
0 diff
(100 %id)
AL550936 placenta, Placenta Cot 25-normalized .i 1 to 951 1 to 947       947/963
(98 %)
9 diff
(99.1 %id)
BE880097 large cell carcinoma, undifferentiated, lung .i 596 to 1278 1 to 688   tiling clone,   688/835
(82 %)
11 diff
(98.7 %id)
BX420592 brain, fetal brain .i 1023 to 1967 1 to 940   tiling clone,   940/943
(99 %)
13 diff
(98.7 %id)
BX420590 brain, fetal brain .i 1316 to 2370 1046 to 1   tiling clone,   1046/1050
(99 %)
15 diff
(98.6 %id)
BI758359 brain .j 1 to 783 27 to 809   tiling clone,   783/811
(96 %)
5 diff
(99.4 %id)
TI_57214860   .j 1 to 783 27 to 809       783/811
(96 %)
5 diff
(99.4 %id)
BG745523 Spleen .j 503 to 1036 1 to 537       537/565
(95 %)
12 diff
(97.9 %id)
CR983666 T-Lymphocytes .j 700 to 1469 1 to 772   tiling clone,   772/772
(100 %)
2 diff
(99.8 %id)
CA843188 Pancreas, Purified pancreatic islet .j 1032 to 1519 1 to 488   fully sequenced,   488/488
(100 %)
5 diff
(99.0 %id)
CA867590 Pancreas, Purified pancreatic islet .j 1033 to 1422 1 to 390   fully sequenced,   390/390
(100 %)
2 diff
(99.5 %id)
BG745779 Spleen .j 1045 to 1936 920 to 13       908/1150
(78 %)
0 diff
(100 %id)
FN117300 breast carcinoma .j 1219 to 1317 1 to 96       96/96
(100 %)
3 diff
(96.9 %id)
CB177395 Pancreas, Purified pancreatic islet .j 1329 to 1959 4 to 633   fully sequenced, AAA   630/633
(99 %)
8 diff
(98.8 %id)
CA867306 Pancreas, Purified pancreatic islet .j 1392 to 1958 567 to 1   tiling clone, fully sequenced,   567/567
(100 %)
0 diff
(100 %id)
CB068478 Pancreas, Purified pancreatic islet .j 1489 to 1961 473 to 1   fully sequenced,   473/473
(100 %)
0 diff
(100 %id)
CA843942 Pancreas, Purified pancreatic islet .j 1489 to 1959 471 to 1   fully sequenced,   471/471
(100 %)
1 diff
(99.8 %id)
DB141007 thymus .j 1605 to 2048 2 to 446   tiling clone, capped   445/445
(100 %)
1 diff
(99.8 %id)
AW130446 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .j 1637 to 1971 336 to 1       336/336
(100 %)
5 diff
(98.6 %id)
CD654668 Embryonic Stem cells .j 1935 to 2763 4 to 826       823/828
(99 %)
16 diff
(98.1 %id)
DA112710 cerebellum .j 1971 to 2574 2 to 605   tiling clone, capped   604/604
(100 %)
0 diff
(100 %id)
DB164209 thymus .j 1990 to 2563 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DB145119 thymus .j 2078 to 2607 2 to 533   capped   532/532
(100 %)
4 diff
(99.3 %id)
DB134073 thymus .j 2081 to 2632 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
BM927023 brain .j 2157 to 3025 1 to 875   tiling clone,   875/1021
(85 %)
13 diff
(98.8 %id)
AA381302   .j 2192 to 2462 1 to 272       272/272
(100 %)
1 diff
(99.7 %id)
AA381620   .j 2192 to 2432 1 to 241       241/241
(100 %)
0 diff
(100 %id)
CV424601 prostate_normal .j 2349 to 2767 1 to 419       419/419
(100 %)
9 diff
(97.9 %id)
DA073485 cerebellum .j 2366 to 2928 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA770008 brain .j 2420 to 2934 2 to 516   tiling clone, capped   515/515
(100 %)
0 diff
(100 %id)
CX759685 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .j 2873 to 3639 1 to 759   tiling clone, Submitted on the opposite strand 759/764
(99 %)
13 diff
(98.3 %id)
BM544023 ovary (pool of 3) .j 3040 to 3873 20 to 851 E206D P213H L215F L217Y tiling clone,   832/1085
(76 %)
12 diff
(98.9 %id)
AL038876 Kidney .j 3868 to 4268 1 to 402   tiling clone,   402/407
(98 %)
5 diff
(98.8 %id)
AA300791 testis .j 3958 to 4279 1 to 321   tiling clone,   321/321
(100 %)
1 diff
(99.7 %id)
TI_151770434   .j 4177 to 4675 108 to 606   tiling clone,   499/1277
(39 %)
15 diff
(98.9 %id)
BF744786 breast .j 4354 to 4887 1 to 533   tiling clone,   533/533
(100 %)
8 diff
(98.5 %id)
BF744742 breast .j 4355 to 4844 1 to 491       491/491
(100 %)
17 diff
(96.6 %id)
AW838348 leiomios .j 4364 to 4681 13 to 330   tiling clone,   318/330
(96 %)
0 diff
(100 %id)
BE082281 breast .j 4364 to 4688 13 to 337       325/337
(96 %)
0 diff
(100 %id)
BE081695 breast .j 4369 to 5016 1 to 643       643/646
(99 %)
12 diff
(98.2 %id)
AA323823 brain, cerebellum .j 4643 to 4933 1 to 291       291/291
(100 %)
0 diff
(100 %id)
BE081702 breast .j 4715 to 5065 1 to 350   tiling clone,   350/354
(98 %)
2 diff
(99.5 %id)
AV721424 hypothalamus .j 5020 to 5477 1 to 449   tiling clone,   449/449
(100 %)
6 diff
(98.7 %id)
BY798565 eye .k 1 to 637 1 to 637 exact tiling clone,   637/637
(100 %)
1 diff
(99.9 %id)
TI_57238600   .l 1 to 762 35 to 796 exact     767/796
(96 %)
2 diff
(99.8 %id)
BI912889 brain .l 1 to 762 2 to 763 exact tiling clone,   763/763
(100 %)
4 diff
(99.5 %id)
DA377374 thalamus .m 1 to 577 2 to 578 exact tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
TI_57153088   .n 1 to 835 58 to 911 V2G R11A A12P R13G S14A ... tiling clone,   852/1087
(78 %)
27 diff
(97.6 %id)
BI765190 pooled colon, kidney, stomach .n 8 to 835 1 to 848   tiling clone,   846/1024
(82 %)
28 diff
(97.3 %id)
DA182326 amygdala .o 1 to 538 9 to 546   tiling clone, capped   545/545
(100 %)
1 diff
(99.9 %id)
DB257068 uterus .o 61 to 641 2 to 582   tiling clone, capped   581/581
(100 %)
0 diff
(100 %id)
BJ992329 hepatoblastoma .o 69 to 501 1 to 433       433/433
(100 %)
0 diff
(100 %id)
DB488349 hypothalamus .o 82 to 537 1 to 456       456/456
(100 %)
2 diff
(99.6 %id)
DB497824 hypothalamus .o 82 to 575 1 to 494       494/494
(100 %)
2 diff
(99.6 %id)
DA453562 tongue, tumor tissue .o 100 to 565 2 to 468   capped   467/467
(100 %)
2 diff
(99.6 %id)
DA453574 tongue, tumor tissue .o 100 to 672 2 to 575 H161I C162V D163M E164K A165L ... tiling clone, capped   574/576
(99 %)
6 diff
(99.0 %id)
AL596885   .o 114 to 533 1 to 420       420/420
(100 %)
0 diff
(100 %id)
BF797698 lymph, lymphoma, cell line .o 141 to 755 1 to 620 L31C P33L S34L W35G S36H ... tiling clone,   620/629
(98 %)
10 diff
(98.5 %id)
BE898343 adenocarcinoma cell line, ovary .p 1 to 644 1 to 643 L23C P25L S26L W27V S28I ... tiling clone,   644/643
(100 %)
14 diff
(97.9 %id)
CB215970 normal endometrium, late proliferativephase, cycle day 13, uterus .q 1 to 599 1 to 599 exact tiling clone,   599/599
(100 %)
0 diff
(100 %id)
DA073240 cerebellum .r 1 to 553 10 to 562 exact tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
DA454183 tongue, tumor tissue .s 1 to 593 2 to 594 exact tiling clone, capped   593/593
(100 %)
1 diff
(99.9 %id)
BM791604 stomach .s 359 to 1006 7 to 654   tiling clone,   648/654
(99 %)
0 diff
(100 %id)
BM817791 stomach .s 359 to 1008 7 to 655   tiling clone,   649/655
(99 %)
1 diff
(99.9 %id)
BM829933 stomach .s 359 to 949 7 to 597       591/597
(98 %)
0 diff
(100 %id)
DA574927   .t 1 to 551 2 to 552   tiling clone, capped   551/551
(100 %)
3 diff
(99.5 %id)
DA566182 heart .t 22 to 592 2 to 572   tiling clone, capped   571/571
(100 %)
0 diff
(100 %id)
DA083743 cerebellum .t 404 to 975 2 to 574   tiling clone, capped   573/573
(100 %)
2 diff
(99.7 %id)
DA170213 amygdala .u 1 to 526 2 to 527   tiling clone, capped   526/526
(100 %)
1 diff
(99.9 %id)
DA708075   .u 64 to 616 2 to 555 K10R tiling clone, capped   554/556
(99 %)
3 diff
(99.5 %id)
BF057519 fibrotheoma, ovary .u 194 to 644 578 to 128   tiling clone,   451/578
(78 %)
2 diff
(99.7 %id)
DA313520 hippocampus .va -9 to 512 2 to 524 A2L tiling clone, capped   523/523
(100 %)
2 diff
(99.7 %id)
BQ338964 nervous_normal .va 363 to 750 8 to 394   tiling clone,   387/400
(96 %)
1 diff
(99.8 %id)
BF229342 colon_ins .va 546 to 879 334 to 1   tiling clone,   334/345
(96 %)
0 diff
(100 %id)
CN414607 embryonic stem cells, DMSO-treated H9 cellline .va 661 to 854 1 to 194       194/194
(100 %)
0 diff
(100 %id)
DA798405 brain .vb 1 to 457 2 to 460 A2Q K29E V30G L31F F32V ... tiling clone, capped   459/459
(100 %)
2 diff
(99.6 %id)
DA333240 hippocampus .vb 5 to 574 2 to 572 L28X K29E V30G L31F F32V ... tiling clone, capped   571/571
(100 %)
3 diff
(99.5 %id)
DA163946 amygdala .vb 11 to 588 2 to 579 exact tiling clone, capped   578/578
(100 %)
2 diff
(99.7 %id)
DA028948   .vb 154 to 718 2 to 566   tiling clone, capped   565/565
(100 %)
3 diff
(99.5 %id)
BF367112 placenta_normal .vb 372 to 725 353 to 1   tiling clone,   353/513
(68 %)
4 diff
(99.3 %id)
DA019251   .vc 1 to 541 2 to 542 exact tiling clone, capped   541/546
(99 %)
1 diff
(99.9 %id)
DA055315 cerebellum .vd 1 to 538 5 to 542 exact tiling clone, capped   541/541
(100 %)
0 diff
(100 %id)
BF034074 adenocarcinoma, ovary .ve 1 to 696 1 to 689 E14D L15W A16R P17Q V18C ... tiling clone,   689/892
(77 %)
21 diff
(97.7 %id)
DB126402 thymus .vf 1 to 378 2 to 379 exact tiling clone, capped   378/378
(100 %)
2 diff
(99.5 %id)
DB208791 trachea .vg 1 to 589 5 to 595 exact tiling clone, capped   594/594
(100 %)
3 diff
(99.5 %id)
BU950624 Pancreas, Purified pancreatic islet .vh-u 1 to 659 11 to 669   tiling clone,   659/669
(98 %)
0 diff
(100 %id)
BI715158 Pancreas, Purified pancreatic islet .vh-u 8 to 511 1 to 504       504/504
(100 %)
0 diff
(100 %id)
BU431164 lymph .vh-u 228 to 678 1 to 451   to resequence,   451/451
(100 %)
8 diff
(98.3 %id)
TI_154152999   .vh-u 235 to 798 80 to 643 S46N R72P     564/582
(96 %)
10 diff
(98.3 %id)
R07617 liver and spleen .vh-u 340 to 669 16 to 345     Submitted on the opposite strand 330/345
(95 %)
0 diff
(100 %id)
T89319 lung .vh-u 357 to 794 1 to 439 L10*   Submitted on the opposite strand 439/446
(98 %)
13 diff
(97.1 %id)
BX118229 liver and spleen .vh-u 481 to 1239 769 to 11 A64V AAA Submitted on the opposite strand 759/759
(100 %)
4 diff
(99.5 %id)
CN411972 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vh-u 563 to 1170 1 to 610       610/610
(100 %)
4 diff
(99.4 %id)
DA934267 Spleen .vh-u 613 to 1170 2 to 559   tiling clone, capped   558/558
(100 %)
3 diff
(99.5 %id)
BI792364 Pancreas, Purified pancreatic islet .vh-u 645 to 1239 596 to 1       596/599
(99 %)
2 diff
(99.7 %id)
BQ013416 placenta .vh-u 738 to 1239 520 to 19   tiling clone, AAA   502/502
(100 %)
0 diff
(100 %id)
AW183303 pooled .vh-u 838 to 1090 253 to 1       253/255
(99 %)
0 diff
(100 %id)
DA216465 brain .vh-u 847 to 1426 2 to 583   capped   582/582
(100 %)
10 diff
(98.3 %id)
R07661 liver and spleen .vh-u 877 to 1240 373 to 1     Submitted on the opposite strand 373/377
(98 %)
11 diff
(97.1 %id)
T89069 liver and spleen .vh-u 900 to 1240 346 to 1     Submitted on the opposite strand 346/346
(100 %)
7 diff
(98.0 %id)
BQ346433 nervous_tumor .vh-u 993 to 1180 191 to 3       189/193
(97 %)
0 diff
(100 %id)
DA535651 heart .vh-u 1125 to 1723 2 to 600   tiling clone, capped   599/599
(100 %)
0 diff
(100 %id)
DB359331.
matches multiple genes
whole embryo, mainly body .vh-u 1250 to 1748 40 to 531   tiling clone, Submitted on the opposite strand, also hits gene sloymee 492/533
(92 %)
15 diff
(97.2 %id)
AW574988 lymph .vh-u 2669 to 3082 429 to 16   tiling clone, to resequence,   414/429
(96 %)
0 diff
(100 %id)
CB154592 brain .vi-u 1 to 650 1 to 650 exact tiling clone,   650/650
(100 %)
0 diff
(100 %id)
BI833029 pooled pancreas and spleen .vi-u 422 to 1310 1 to 885   tiling clone,   885/887
(99 %)
23 diff
(97.5 %id)
TI_57168594   .vi-u 422 to 1310 44 to 928       885/930
(95 %)
23 diff
(97.6 %id)
BM353869 Pancreas, Purified pancreatic islet .vi-u 454 to 1065 1 to 612   tiling clone,   612/612
(100 %)
0 diff
(100 %id)
CK821503 Pancreas, Purified pancreatic islet .vi-u 475 to 1053 1 to 579     Submitted on the opposite strand 579/579
(100 %)
0 diff
(100 %id)
DA252147 caudate nucleus .vi-u 1271 to 1696 2 to 427   tiling clone, capped   426/426
(100 %)
0 diff
(100 %id)
AL712989 human skeletal muscle .vi-u 1424 to 1781 385 to 28   tiling clone, Submitted on the opposite strand 358/385
(92 %)
0 diff
(100 %id)
DA949069 Spleen .vj-u 1 to 555 2 to 557 D4* tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
CR991307 T-Lymphocytes .vj-u 174 to 840 1 to 669   tiling clone,   669/670
(99 %)
2 diff
(99.8 %id)
BF527670 anaplastic oligodendroglioma with 1p/19qloss, brain .vk 1 to 750 1 to 739 I49M V50* tiling clone,   739/829
(89 %)
22 diff
(97.4 %id)
DA809458 brain .vk 176 to 773 2 to 599 exact tiling clone, capped   598/598
(100 %)
0 diff
(100 %id)
DA101011 cerebellum .vl-u 1 to 590 2 to 591 exact tiling clone, capped   590/590
(100 %)
0 diff
(100 %id)
CV362255 nervous_tumor .vl-u 271 to 545 27 to 296       270/296
(91 %)
0 diff
(100 %id)
DA947776 Spleen .vm 1 to 568 2 to 570 exact tiling clone, capped   569/569
(100 %)
1 diff
(99.9 %id)
DA362846 subthalamic nucleus .vn 1 to 549 2 to 550 exact tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
DB035600 testis .vn 1 to 513 2 to 513   capped   512/512
(100 %)
2 diff
(99.7 %id)
BQ637204 eye, retina .vo-u 1 to 492 1 to 492 exact tiling clone,   492/492
(100 %)
0 diff
(100 %id)
AW579406 denis_drash .vp-u 1 to 428 1 to 429 V2A A3S G5A S6E S7Q ... tiling clone,   429/429
(100 %)
15 diff
(96.6 %id)
AI251696 ovary, papillary serous carcinoma .vq-u 1 to 365 398 to 34 exact tiling clone,   365/398
(91 %)
0 diff
(100 %id)
AI254508 ovary, papillary serous carcinoma .vq-u 5 to 365 394 to 34 exact     361/394
(91 %)
0 diff
(100 %id)
AA322282 brain, cerebellum .vr 1 to 303 1 to 303 exact tiling clone,   303/303
(100 %)
1 diff
(99.7 %id)
AA095896   Gene ABCD4, variant not shown         Suspected internal deletion, this clone was ignored    
AK125109 tongue, tumor tissue Gene ABCD4, variant not shown       available from FLJ, AAA Submitted on the opposite strand, submitted on the opposite strand    
BM353593 Pancreas, Purified pancreatic islet Gene ABCD4, variant not shown              
DB302014 amygdala Gene ABCD4, variant not shown         This clone was ignored    
DA158224 amygdala Gene ABCD4, variant not shown       capped This clone was ignored    
F02255 brain, total brain Gene ABCD4, variant not shown         This clone was ignored    
F06011 brain, total brain Gene ABCD4, variant not shown         This clone was ignored    
F06287 brain, total brain Gene ABCD4, variant not shown         This clone was ignored    
Z39185 brain, total brain Gene ABCD4, variant not shown         This clone was ignored    
CD709044 normal nasopharynx Gene ABCD4, variant not shown         Suspected internal deletion, this clone was ignored    
BX400618   Gene ABCD4, variant not shown         This clone was ignored    
DB314429 tongue, tumor tissue Gene ABCD4, variant not shown         Submitted on the opposite strand    
DW410310 Liver Gene ABCD4, variant not shown              
DB316817 brain Gene ABCD4, variant not shown              
DA515827 brain Gene ABCD4, variant not shown       capped      
H95882 pineal gland Gene ABCD4, variant not shown              
H95883 pineal gland Gene ABCD4, variant not shown              
AA535541 colon Gene ABCD4, variant not shown         This clone was ignored    
AA523219 lung, lung tumor Gene ABCD4, variant not shown              
AI056372 brain, glioblastoma (pooled) Gene ABCD4, variant not shown         Suspected internal deletion, this clone was ignored    
AI718689 aorta Gene ABCD4, variant not shown              
AW118926 pooled Gene ABCD4, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BG539571 lung Gene ABCD4, variant not shown         This clone was ignored    
CK821504 Pancreas, Purified pancreatic islet Gene ABCD4, variant not shown         Submitted on the opposite strand    
BU167957 eye, retinoblastoma Gene ABCD4, variant not shown         This clone was ignored    
CD243419 testis Gene ABCD4, variant not shown         This clone was ignored    
DB115348 thymus Gene ABCD4, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB166230 thyroid gland Gene ABCD4, variant not shown       capped This clone was ignored    
DB382206 thyroid gland Gene ABCD4, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf, .vg, .vh-u, .vi-u, .vj-u, .vk, .vl-u, .vm, .vn, .vo-u, .vp-u, .vq-u, .vr Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI